Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20477 LG5 23474551 23475544 PREDICTED: squamosa promoter-binding-like protein 9
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, anther development, anther development, regulation of transcription, DNA-templated, leaf development, anther development, vegetative to reproductive phase transition of meristem, response to cold, vegetative to reproductive phase transition of meristem, vegetative to reproductive phase transition of meristem, response to cold, leaf development, regulation of transcription, DNA-templated, leaf development, leaf development, regulation of leaf formation, regulation of transcription, DNA-templated, anther development, vegetative to reproductive phase transition of meristem, regulation of leaf formation
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/A 23474802 missense_variant p.Thr169Ile
A/C 23474872 missense_variant p.Ser146Ala
A/T 23474879 synonymous_variant p.Ser143Ser
C/A 23475128 missense_variant p.Arg60Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20477.1
MLGNNSLVIFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGANFLMELASYPKLSLRNSLPTPRSSELAPGSQTSTLSWHGNAETPSDIFLQGSVGGTSFAGPGHPPGESYTGVTDSSCALSLLSSQTWGSRNTAPSLGLNNMINFNGTPMTQLSASSHGASLHELPNTSWCFKGIDSGNCSPEVVPDLGLGHISQPLNGQLHGELDLSQQGRRHFMDLEQSREYESAHWSL*


CDS Sequence:
>Vu_20477.1
ATGCTAGGAAACAATAGTCTTGTCATATTTCACCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTGGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCTCTCTTAACCTCTCGCTATGCCAGGCTTTCTTCATCTGCTTTTGATAATAGTGGCAGAGGGGCCAACTTTCTGATGGAATTGGCTTCATATCCTAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAGCTAGCTCCTGGAAGTCAAACCTCCACACTTAGCTGGCACGGCAACGCAGAGACACCATCTGACATTTTCTTGCAGGGTTCGGTTGGTGGGACAAGCTTTGCCGGTCCCGGTCATCCTCCAGGGGAAAGTTACACAGGTGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAATAATATGATAAATTTCAACGGGACACCCATGACACAACTTTCTGCTTCATCTCATGGTGCATCACTCCATGAACTTCCAAATACCTCGTGGTGTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCTGAGGTTGTCCCTGATCTAGGTCTGGGTCATATTTCACAGCCTCTGAATGGCCAGCTCCATGGTGAGTTAGATCTGTCTCAACAGGGAAGGAGGCATTTCATGGATCTAGAACAGTCCAGGGAATATGAATCTGCTCATTGGTCACTTTAA


Promoter Sequence:
>Vu_20477::LG5:23475544-23477544(-)
TTTCTTCTTCTTGTGCTCTTTTAATATTTTACTATAATAGGTGAGGTAAGATAAAGTAGGGTAGGGTGTTGTTTATTTTATTAAAAAAATTGTCCGTTATTCTAAGGTTTCGGGTGCCTGTGGTGTAGGTTTGTAGGTGAGATATGTTATCCTGTTTTGTCGTTGCAATTATAGGCTTGTTATTTATTTGGTGTTGTTGGTTTAGTTCCTTAATCGTGGTTTTTCTTTTGATCAAGTTTTGGTGTGATTCTTCGTGTCCGTTCTGGAGATGTTTTGTTCAGTTATGATTTGGTTGATTATGCACGGTGTACTTTGCTTTTTCCTCTAGCCTAGCTTTAAAGTGCTTATCTGAACGGCTGTCTGATAACGCGTGTGAAATATTGTTTTCCTTTTCAGCGAATTGATTCTTGCACCCAGGTGTGTTTGGTATTAAAAATAATAACTCGGTTTGTACGGAAAAGGTTTGAAGTGGGTGTGCAACTTGTAGTCTGAAAATCACAATACACTACACTACTCTGCTGTTCTACCTCTAGCCTTGTGGGGTTGGGGTATGGGCCCTCTATTCTGTATTCATGTGCTGTTATAATTTGTGATTACTGTTTAGTGATTGGATTTCATGTTTTGGGGAAATAATGATTGTTTTTTCTATTTATAGATTACTGAGAGAGCCTTTGAAAAAACCTATTGTTTCTCAAATATAATATATTACCAAACATGAGCAAACTTTATAGGTCCGTATCCGTGAAAAGATTAATCCAGGTATTTCAGTAGTGTTATGAATCAAGTGTTTTATAATTTGTTATTTGTGCTACAAGAGCAATCCCTTTTTATCTTAGTGAAGCTTGGGTTGTTGGTTAAGGCTTGCATTATTATCATAATGATAGTTTTCCGCTAATTGGACTATGAAAGTGGCCACAACCTTCCATTGTCTGGCCATCCATAAAGTGGGTCCTGGTAGTAGATAATGAGATTTTATATGACATAAGCTTGATACATTGTCTAATTGTTCATGTATTGCCTCCGAGACTCATGTATAGCTTGATAGGTTGTCTAATTCTCTGTAGTTATTGACTTATTATCTCTTTATTGAGAATGAGTGTGAAATCCGAACCACACGCCTTGCTTATGTGCCTGCGTATTTTCTTTCTATCATGTTTTATGATTCTAGCTATGCAGACTGTTTTTGTTACATCTGCCATTCATTGGCTGCATCACATTAGTCAATGAACGTGGTTTTCCTTTGCAGTATATTTTTTGGAGCAGGGATAGCCTTTGGGTATATGCTCCAAGTGTAATTTTTGTCTTTTTTGGTCTCACGGTTCTTCAGTGTTTCAAGAGGCTTTTCTAGGTCATAAGTTATACTTTTGATCTGTAGAATTTCTAGTGGAGAAGCAAGCTATTTTTCATAGTGAGAATAATCAGAAAATACGAAAACAATACTCTATGCTTAGATAAAGTACGTGTTAATATCAGTGATAATGCAAACATATTTTTGAATATGGATTTTTCTAGCATCCAACCTGACTTAAGGCATTTCAAATGGGGCTATAGGAAGATCTATATTGTGGTTTATTCCCTATATTTAAGATTTTTAACTTCTCTTACTGCTTCCCCTTTTGCTAATAAAGAAGAGAAAGAGCGTTATTGGTATTGTCCATAGTTTTATTTTACGAATATGTTAAAGCTGAATTCTCTGTATCATGGAACCACATGATGTTATCTGAGCAATGTTTAAGGATTGTCTTTGTAAAGCAGGTGTCAAGTAACATCTTATACTCTGCTAATATGCTATCTCATTCAGTGCTAGACATGCTCACATGATGTGCGTCATTTCAAAATGTGAACGAGATTGCTACATCTAATGGAAAAACACCGTTCTTCTATTGTTTATACATATTATATTGCTTGTGCTCTTTACTATTTTCAATTATGACTGTATAGTCTGTTAGAAATTTCGTCTTGTGGCAACAATACGTGTGGCGACAACACGATAGCATGTC


Gene Sequence:
>Vu_20477(-)
ATGCTAGGAAACAATAGTCTTGTCATGTTAGCATGGCTGCACTTATTCATCTATCTTTGACTTAAATTGGAATAATTTATAAGTTATAGCTATAAAAACTAATATCATGTTTCATAGCCTTGCTCAGATTTCACCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTGGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCTCTCTTAACCTCTCGCTATGCCAGGCTTTCTTCATCTGCTTTTGGTTAGAAACTATCAGTAAAACATCAGTTTCATGCCTCTCAAATTTTCTATAGGGAAGGACGTGTAGTTTCAGCTTGTGCCATTCTTGGCATTACATATAAAACACATTCTAATGTTTGGCACCTTTTTTGACAGATAATAGTGGCAGAGGGGCCAACTTTCTGATGGAATTGGCTTCATATCCTAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAGCTAGCTCCTGGAAGTCAAACCTCCACACTTAGCTGGCACGGCAACGCAGAGACACCATCTGACATTTTCTTGCAGGGTTCGGTTGGTGGGACAAGCTTTGCCGGTCCCGGTCATCCTCCAGGGGAAAGTTACACAGGTGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAATAATATGATAAATTTCAACGGGACACCCATGACACAACTTTCTGCTTCATCTCATGGTGCATCACTCCATGAACTTCCAAATACCTCGTGGTGTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCTGAGGTTGTCCCTGATCTAGGTCTGGGTCATATTTCACAGCCTCTGAATGGCCAGCTCCATGGTGAGTTAGATCTGTCTCAACAGGGAAGGAGGCATTTCATGGATCTAGAACAGTCCAGGGAATATGAATCTGCTCATTGGTCACTTTAA