Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_20478	LG5	23477371	23477953	PREDICTED: squamosa promoter-binding-like protein 9	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of cell size, regulation of transcription, DNA-templated, vegetative to reproductive phase transition of meristem, regulation of transcription, DNA-templated, anther development, regulation of transcription, DNA-templated, vegetative to reproductive phase transition of meristem, regulation of cell population proliferation, anther development, anther development, anther development, vegetative to reproductive phase transition of meristem, vegetative to reproductive phase transition of meristem, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
A/T	23477382	synonymous_variant	p.Arg123Arg
T/A	23477457	upstream_gene_variant
G/T	23477796	missense_variant	p.Ser53Tyr
A/T	23477865	missense_variant	p.Val30Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_20478.1

MGSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPATSLTSAAVAAGVTSSSSSSSSRKGRGGSVQPAQPPRCQVEGCMVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFVGEICYPVLSLQL*

CDS Sequence:
>Vu_20478.1

Promoter Sequence:
>Vu_20478::LG5:23477953-23479953(-)

GGATAAAGTTATTATGACAAGCATTTAATAAAATGACATATTTATATTTAAGTTAACTTGGAATAGTTTTACGTTAATTGATAAGAGTTGAATATATATATTTTTATAATAACCCACCCATTTTTAAATCAACAAAACTAAATCCTTATATTGATTTAAGTTGAGTGATAAAAAAACAGGTATTCATATTATATATCATGTATTTAGTTTTACAATTTTAAAATATGCATTAAAAATAATATATTTTTAAAGTTTAATAAAAAAAGTATTCATTATATTTATATTTTATGTTTTGAACTGTACGGATTCATTATTTAATAATTGATTATATTTGAAATTATGTTCTTAATCTCACTTAGAAGCTGTTAGGATTCATTTTTCTGCCGTACTCTCCTCGTCTCATTTGTTATATTCCCTTTCTTTCTCCCAATCCTTAACAATTTCCCTAACCTAAAAAAAGAGAAACGAAATTTTTTCATGAAAATTTAATGAGAAAAAAAGAAAAGAAAAGAAAGAAGGTACAACATTTTTATTTAATTTACTTTATACTTTTTTTATTGAATTTAGTTTTAAAGGAATGAAGAGAAAATAAAAAGATATAGAATATCTTTATGTACTTATTTATTTGAAAAAATTTATGTTTAATTTTCCTTTTTATTCTTTTTCATATTGATTAGGACTCGTTGACGTGATGGTTGTGAGGGTACGTGTGAGAAAGAGAATGATGACACAGATTATAATTGCTAACTTACTATTAACAAAATCACTGGTTAAGAGACAGATAATTCACTTTTGAAAGACACAAACCGAACAATACTTTAAGAACTAAACTAAATAGTAGGATATTCATAAGAATTGAAACCCAAATCTAACAAATAAAAAGTTTCTAAGTACACAAATCAAGTTTAAAATATACATTTTGTGGGATATGGAACTGTTTGATATTATTTATAGTGAGGCGCTTTGGCGTTACTTAAACAACCCATCAACGCTGACTTGCATTGTACAGTACTTCCAAAAACAATGTAAGAGAACGTTGAATAACATTTAAGCATACTAAACGTTACACTACAATTTTGATATTTTCCTTTACTTTCTTGTGCAACAGAAAATAGGTGCGAAAGGGAAATACTCTCCAGGGCGAGGAAAATGGAGGAGATCCTCTATGAAAACGCTAGTGTAGCTGGGAAGAGGGTAAGAATTGCGAGGTTAGGGTTAATTATTATTATTATTATTGTTGTTGTTGGTGGTGGTAGTTTTGATTCTGAAAGTATGGGTATGTATGTATATGCTGATTCTGAAATTAATATGTGAATGTGAAGGTATGTGTGTTTGAATTTTAGGAAGGGATGGGTAGAAAGATGTGTTTGTTTTATTGTAAAATTTGGGTGGATGGATACATCCCTTTCGTATGTAGAACCAGCTAGCATAGCGAGTATGTGACAGGGACAGAAAAAGTTGCACAAAACGACAGTTACACTTGTTAGGGCCGGGAATGGTTAAAACTTGAAACGTTGGATTTGGATGTGGAGGCAGTGAGGGAAATTGAATTGTTGAGTTGAGAAGGGAAGGGAAGAAAAAGGAGAAAAACAAAAGAGGGTACAATCTGTCTCTCGTAGCTGGCGCTTTACCTCCATTATTTTTGGTTTTGGACAGACAAGGGTGTGTTTGGTTCTCTGACTACACTCACTCCTTCTCTCTTCTCAGTGTACCACACGCTGCCACTGCCCACTGCCACTATGGCCCAGCGTCAACTCTCTCCTTTTCCCCCCTACCCTTCCACCTCCTCTTTTGTCTTCCACTTTACTCTCCCACTACCACTCCTTTGAATCAAACACAATACTTTCACATTCACAACTTCACAACCAACCCCTATCTCTCTTTCTCTCTCCCTCCTTCTCTCTCTCTCTTCTCTCTTATTCTTGTCAAACAGACCACAATGAATAATAACATCAATAACAATACACTTTAGCCTGCCACCACACCTCTCATCACCAACA

Gene Sequence:

>Vu_20478(-)

ATGGGTTCAGACGCTGCTGCCACAAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACACCAGCCACTTCTCTTACTTCTGCTGCTGTTGCTGCTGGTGTTACTTCCTCTTCCTCTTCCTCTTCCTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCAAGGTGTCAAGTTGAAGGGTGTATGGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGGTCAACCCATCTTTCATTGTTGTTATTACCTGAAACAAAAAAAATTCTTTCCTTTTCTTCTTCTTGTGCTCTTTTAATATTTTACTATAATAGGTGAGGTAAGATAAAGTAGGGTAGGGTGTTGTTTATTTTATTAAAAAAATTGTCCGTTATTCTAAGGTTTCGGGTGCCTGTGGTGTAGGTTTGTAGGTGAGATATGTTATCCTGTTTTGTCGTTGCAATTATAG