Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20513 LG5 23817439 23819177 probable protein kinase At2g41970
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root hair cell tip growth, pollen tube growth, root hair cell tip growth, root hair cell tip growth, root hair cell tip growth, pollen tube growth, pollen tube growth, pollen tube growth, pollen tube growth, pollen tube growth, root hair cell tip growth, pollen tube growth, root hair cell tip growth
Cellular Component   located in   cytoplasm, plasma membrane, nucleus
Molecular Function   enables   protein tyrosine kinase activity, protein tyrosine kinase activity, protein tyrosine kinase activity
SNP Position Effect Amino acid change
G/A 23817541 splice_region_variant&intron_variant
G/A 23817744 stop_gained p.Trp70*
A/T 23818120 downstream_gene_variant
T/A 23818133 downstream_gene_variant
T/C 23818139 downstream_gene_variant
C/T 23818292 stop_gained p.Arg200*
A/G 23818299 stop_lost p.Ter202Trpext*?
A/T 23818719 missense_variant p.Asn275Ile
T/G 23818773 splice_region_variant&intron_variant
C/T 23818862 synonymous_variant p.Leu295Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20513.1
MLCCGGAEEESSAPPASQYTAPPRGSTYGGGGGSGRGEPRGVARSAPQKVLPIEIPSIPLEELNRLTGNFGTKAFIGEGSYGRVYYAKLSDGTDAAIKKLDNSSSPEPDSDFGTQLSVVSRLKHDNFVELIGYCLEAENRILVYQHASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYETKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPETQA*


CDS Sequence:
>Vu_20513.1
ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGCCCCCCCTGCAAGCCAATACACTGCACCACCTAGGGGTAGCACATACGGCGGAGGAGGAGGAAGTGGTAGAGGAGAGCCTAGGGGTGTTGCAAGGAGTGCCCCACAGAAAGTGTTGCCGATTGAGATACCCTCTATTCCATTGGAAGAGTTAAATAGGTTAACAGGAAACTTTGGTACAAAGGCTTTCATCGGCGAAGGTTCCTACGGACGGGTTTACTATGCAAAATTGAGTGATGGTACTGATGCTGCTATTAAGAAGCTGGATAACAGTTCTTCCCCAGAACCTGACTCCGATTTCGGCACTCAGTTATCGGTTGTCTCAAGACTGAAGCATGACAACTTTGTTGAGTTGATTGGATATTGTCTAGAGGCAGAAAACAGAATTTTGGTATACCAACATGCAAGCCTTGGTTCTTTGCATGACGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAGCCTGGTCCAGTTCTAAGTTGGAACCAAAGAGCCAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGACCAAGATAGCAGATTTTAGCTTGACAAATCAGTCTTCTGACACAGCCGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCGGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGTGTTGTGCTATTAGAACTCTTGACTGGAAGAAAACCAGTAGATCACACAATGCCGAAAGGACAACAGAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGCGAGGACAAAGTGAAACAATGTGTTGATCCTAAGCTAAACAACGAGTATCCGCCAAAGGCTATTGCCAAGTTGGCAGCAGTGGCAGCGCTTTGTGTTCAGTATGAAGCTGATTTCAGACCAAACATGACGATTGTGGTGAAAGCTCTTCAGCCACTTCTCAATGCAAAACCGCCTGGTCCTGAAACTCAAGCTTGA


Promoter Sequence:
>Vu_20513::LG5:23815439-23817439(+)
CTAAGACCAATGTTATGATTCATTTCATTTTAGAAACACATTGTGATAGTATAAAGGATTTGTAAAGTTTTGCAAAAATACTTCTTTTATCTGCAAAAATACTTCTTTAATCTAGCTCCACATTCAAACCCAAAAAATTTCATCATACCTACATCTTTATCATGAGGTTTTGCTTCTTTGCTCACGCTGGATCACTCTACCAATTTCATTTGATCTTTCTTTATTATTTAATCTGACTTCTAATGTGTGTTCTTTACTCGACATTTTCTCTTTTAGCACAAGGGTGTATATAGAATACAACAACTAATACATTAACTCATTTCCATACATTAATCAAATGTTGTATAAAGAAAACATAGTATACCTTAATGTCACAAAGACAACATCTCAATGTTTTCACTTGAAAAAAGGACACTTAAATACGAATAAGCCATAGTCTTCGTAGAATTTTTTTATCAGTTCCTTCAGAGAAAAATAACAAAAAGAAGAGTAAAAGTTAGTTGATTAGAAAATTCATTATCTGTATAGAGACATGGGAAGTCAAGAACCTTGATAATGGAGATAGAAAAGTTTAAAAAGGTACAAGAATCTTCATCCCTCATATTCCACCACTAATTTATTTCTTCATCCCTTATTCCTATTACTTTTAGGTTTTCCTCTTAGTTTTTCTCCTTGATTTCTTTTTTATTTTAATCTTTAATTAAAAAGATAAACATATATCAGCTCGATAAATTACAATTCAGTTATTAATTTTAAAAGTAAACTTATATGTAAAATTTAAATATTTACACCCATTCCTTTTTACTTATTCATTTTGGAAGGTTATATATGATGGCAGTTTTGCTATGAATCATATCCAAGTGTTATCATGATAAAAATCTCATTCAATTGGACTCATTGATGAGCATCAGTACATTAATTTAAAGGATCAAAAAACTTATTCGTCATAATGAAGACTGATATTTGTATAAATGTTGTTTGTAGTGAGATCTTTATAAATGGTAGGCGAACACATGTTTAGGAGAAATTATAAAAGATAGATTGACAGATAGGCAGTGGTAAATCCAATCATTGAGACGAAAAGAAAACATAAAAAAGGTCAGCATATGATTTGCACGTCATGTTTGGGTGTCAGATGATAAGAAAGACTTAGAAATAACAATAATAACCATATAATAAAGAAAGCTCTAAAATAGAAGGTAATGAACGAAGGACATGCTTCCATCGTGGGGGCACGTACGTGCAACACAACCCTACCAACGTTGGCGCACACAACAATTGTTTATCTTCCAACCGACATTCCCGGCAAAAACAATAACATCTACCTTTCTTCCCAAACCACTTTCATTACACCAAACTTACCCAACTACGCCAAAACTTTCCTCCTTCTGCATTTCCCAATCCTTCACTCTCTTTTTATTTTTCTCTTCCTAATATTCCTCTTTCTCGTCCACTCATTGTATGTGCCATCGTTAACGTGATTTATCACAACTTTCCTGAGGTAACCAGATAACCTCGTCTTACGGTTCTTTATCCGTCTTCTTCCACTTGTACATTTTTATGCATCAGGAGGGTTTAAATCTTTTATGTGTATGTGGGGTTGATTTTGCGCCGTTAGCAATGCCAAACGCATTCACGATGCTGCGTTCCATCAACTTTGCTGCTTCTTTTCTTGAACGTTAAAGAGAGGATGCTTTGTTATTTATATTGTTCGTGTGTCGATTCTACTGGAACAAAAAGTTGACTTTTTTTTTATTGATCATGTTCATCACCTCTGTCCAAAACCATAGACAAATGGACACACGTTCTTGAGATTTTGGTACTCGACGAATGAAAAAATGGCAGAGGCCACCCCATGTTTTTTTTATTGGATTTTATCTTGTTTCCGCATTGTCTGTTGAGAATTTGAGCGTTGAAAATGGTTTCAGGTGATTCATTGAATACCGATCGTTTCTGTGAATATGGCTTATTGAGAGGTGCAGATAGGACCAGCTGAAGTA


Gene Sequence:
>Vu_20513(+)
ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGCCCCCCCTGCAAGCCAATACACTGCACCACCTAGGGGTAGCACATACGGCGGAGGAGGAGGTAACGTCTTCATATTTGTAATTCTCTTTTTTATGCAATACATTTCCTCTGCAAGGTTATGGATAATGATTTGCAGTAACCCTGGGTGAATGCAGGAAGTGGTAGAGGAGAGCCTAGGGGTGTTGCAAGGAGTGCCCCACAGAAAGTGTTGCCGATTGAGATACCCTCTATTCCATTGGAAGAGTTAAATAGGTTAACAGGAAACTTTGGTACAAAGGCTTTCATCGGCGAAGGTTCCTACGGACGGGTTTACTATGCAAAATTGAGTGATGGTACTGATGCTGCTATTAAGAAGCTGGATAACAGTTCTTCCCCAGAACCTGACTCCGATTTCGGCACTCAGGTATGCTTTTGATCTCATAATGTAATTCCATTTCCTCGTTCATGATGATGTTGTCACACATTTCACTATTGATCTTGCAGTTATCGGTTGTCTCAAGACTGAAGCATGACAACTTTGTTGAGTTGATTGGATATTGTCTAGAGGCAGAAAACAGAATTTTGGTATACCAACATGCAAGCCTTGGTTCTTTGCATGACGTGTTACATGGTAAGTCCAACACTGTCGCTATTCAATTAAGAAAACAGGTCTGGTTCTTTGTCTGAACTCTAGGCTTTTGCTACAGGAAGGAAGGGTGTACAAGGGGCTGAGCCTGGTCCAGTTCTAAGTTGGAACCAAAGAGCCAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGACCAAGATAGCAGATTTTAGCTTGACAAATCAGTCTTCTGACACAGCCGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCGGAGTATGTCCTCAATGAAACCTTCTGATACATTAGCCATAACGTTAAATGCATACTGAAAAATATTTGTTTCTAGACAAGTGTGTCTTCGATTATTGGCAATAATTTCATGTTCCATCCCATCCAAACACTATCCTTTGTTGTTAGAAACAATACCATGTTAATGTAAGTTTTAATTTTGTTTTTAAAATGATTACTTCAGGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGTGTTGTGCTATTAGAACTCTTGACTGGAAGAAAACCAGTAGATCACACAATGCCGAAAGGACAACAGAGTCTTGTAACTTGGGTATGTGTTTGTTTGATGACCTTAATTGGTTTTCTTCTCCATTATATTACAATTATGATAATTTGTTCTTTTATTGTTCCAGGCAACTCCAAGGCTGAGCGAGGACAAAGTGAAACAATGTGTTGATCCTAAGCTAAACAACGAGTATCCGCCAAAGGCTATTGCCAAGGTTTGCTCCTTTATGCTTCCACTATAGTTGAACCATGCAACTAAATTTACAAAATTACTTCATAGTAGTGTATAGTTGAGAGTGGTGACTGAATATTAGGCGTTGATAAATGCAGTTGGCAGCAGTGGCAGCGCTTTGTGTTCAGTATGAAGCTGATTTCAGACCAAACATGACGATTGTGGTGAAAGCTCTTCAGCCACTTCTCAATGCAAAACCGCCTGGTCCTGAAACTCAAGCTTGA