Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20537 LG5 24162549 24164234 PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to other organism, regulation of defense response, cellular response to organic substance, defense response to other organism, ethylene-activated signaling pathway, defense response to fungus, ethylene-activated signaling pathway, cellular response to oxygen-containing compound, defense response to fungus, response to wounding, defense response to fungus, cellular response to organic substance, negative regulation of cellular process, cellular response to oxygen-containing compound, secondary metabolic process, ethylene-activated signaling pathway, intracellular signal transduction, response to jasmonic acid, protein phosphorylation, response to jasmonic acid, protein phosphorylation, protein phosphorylation, ethylene-activated signaling pathway, response to chitin, defense response to other organism
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane
Molecular Function   enables   kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity
SNP Position Effect Amino acid change
T/A 24162651 missense_variant p.Ser35Thr
C/T 24162955 missense_variant p.Ala136Val
A/C 24163034 synonymous_variant p.Ile162Ile
G/A 24163140 missense_variant p.Val198Ile
A/C 24163212 missense_variant p.Lys222Gln
G/T 24163522 intron_variant
G/C 24163584 intron_variant
C/T 24163754 intron_variant
G/T 24164199 missense_variant p.Ala416Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20537.1
MPLFWILVTVFLTLPALSLSDSCPLNFDLVLSRPSSDSKTRCLYMRQSLRILQSDYLHRTGLFPPSNASFSCWTALQNHTHQYDIRSSCNLPSSSFSLSCNNITNRSQFEHLLPLSALEPIRNTCNHSLNSFAACALCTKALSNLDSHLTDNTTDCKIIPSIYAASFSNLQDPSTADCLFNFGFPSSVSTGKRRNILVAAFCVLAFFLLVFGVFWAYFRLKKKKKKKDICKTEMGLGSGLDSMNQTTTLIRFTFDEIKKATRNFAGDNIIGKGAYGNVYRGTLVDGTQVALKRFKNCSVAGDPSFTHEVELTERSDVFSFGVVLLELLSGKRALEIDTDGQPSAVTDFAWSLVRNGRALDVIEDGMPELGPIEILEKHVLVAILCCHPQLYARPTMDQVVKMLETEELVSSFSCIAGRIDTEKSVE*


CDS Sequence:
>Vu_20537.1
ATGCCACTGTTCTGGATCCTTGTCACCGTCTTCCTCACTCTCCCTGCGCTTTCCCTCTCCGATTCCTGTCCTCTCAACTTCGACCTCGTCCTTTCGAGACCCTCATCGGACTCCAAGACACGGTGTCTTTACATGCGCCAATCCCTTCGTATTCTTCAATCCGATTACCTCCACCGCACCGGTCTCTTCCCTCCTTCCAACGCCTCCTTCTCCTGCTGGACCGCTCTCCAAAATCACACCCACCAATACGACATTCGTTCCTCCTGCAACCTCCCTTCCTCTTCTTTTTCCCTCTCCTGCAACAACATCACCAACCGATCCCAATTCGAGCACCTTTTGCCTCTCTCAGCTCTTGAACCCATACGGAATACTTGTAACCATTCTCTCAACAGTTTCGCAGCTTGTGCTCTCTGCACCAAAGCTTTGTCCAACTTGGACTCCCATCTCACGGACAATACCACTGATTGCAAGATTATTCCTTCTATATATGCTGCTTCCTTCTCCAACCTGCAAGACCCCAGCACTGCTGATTGTCTGTTCAACTTTGGTTTTCCTTCTTCAGTTTCAACTGGTAAGCGTCGAAACATTCTTGTTGCGGCTTTTTGTGTTCTGGCCTTCTTCTTGTTGGTCTTTGGTGTTTTTTGGGCTTACTTTAGATTGAAGAAAAAGAAGAAGAAGAAGGATATTTGTAAAACTGAGATGGGTTTGGGTTCTGGGTTGGATTCTATGAACCAGACTACTACTTTGATTAGGTTCACTTTTGATGAGATTAAAAAGGCTACTAGGAATTTCGCCGGTGATAACATAATTGGGAAGGGGGCTTATGGGAATGTTTACAGAGGGACGCTGGTTGATGGGACTCAGGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATCCTAGCTTCACTCATGAAGTTGAGTTGACTGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAGGGCTCTTGAAATTGACACTGATGGGCAACCCTCTGCAGTCACTGACTTTGCTTGGTCATTGGTTAGGAATGGTAGAGCTTTGGATGTTATTGAAGATGGTATGCCAGAACTTGGTCCAATAGAAATTCTTGAGAAGCATGTATTGGTTGCTATACTATGTTGTCATCCTCAACTATATGCTAGGCCAACAATGGACCAGGTTGTTAAAATGCTAGAGACGGAGGAATTAGTGTCCTCATTCTCTTGTATTGCTGGGAGGATTGATACTGAGAAATCTGTGGAATAA


Promoter Sequence:
>Vu_20537::LG5:24160549-24162549(+)
ATTCAATTAGGATTTCAAATTTAATTAATAAAGTTAATTCCTAAAAGAAACCTTATCCCAGATCAATTTCCTTTCCCAAATAATTGAGATTTGCCTCAAGGGATGAAAAGTGACGACATAGATACTGATATGCTTCCTGGAATTGTCCAACACAAGAAAAACCCTCTCATCCTAGTTGCAAAAAAGCGAGAATGTCCATGTAGGCTCCACGTTCAACCCTGTTCATTTTATTCATATAAATTCTATAAATAATAATTTACTGTTCTAGCTTTCAACTTGAAACTGCAACTGAATGACTGAATTAATTCAAATACCCATTTAATTAACTGATTTTATTATCACATTTAACACCATATTAAAAGATCAGTTACTCAGATGTAAAATGCTGGCCAGTAACAGTAATTAAAAGATAGCGTATCCATGGCTACCTTAACGATAATCCTACGTTGAAATCCCCATTTTGGGGTTGTCCCTTAATTGGGAGATGGGGCTTTCTCGGATGCTCGCCTTATTCATTTTGGAGGAGGAGCTTGTTTTTGATAAGGCGTAGATACCAGCCATTGCTTTCCACCGATGCAAACAGGTTTTTCACTCACAAGATGCAGTCTCTGGTCTTCCAGAAAGGGGAAAAATCTCTGACGCTCAAGAAAGGAGATACAAAATCTAAGCCCTAGTAAATTATTTCTCACGCCGCCACGAGCCACCGTAAATGCCATTTGGTTGCGCCATCGCGAGCACTTTCCTTGCCCCAGATAAAAGATCAAAACGAAGAAGAAGAGAACGACCAAAGGTTGCCATGTCATAATCTCTCAAATTAAATAAAAATTCCACGTAATAAAATATTTTGACATCAGCGTATTAATTATGTAACACGTCAGCACTAACTAACGCCGTTTGTTACAATTTAACGGTTAGGGTAAAATGTGTTCATTTTTACAAAAAAAATATGACCCAATTGAGACAGATGAAAAAATGATGACCAAACTGAGATTTTCATACAAAAATGAGGACCAAGGGAGGGTTTAAACCTTAATTGTAAAAATGTTTATAAAGAGTAAAAAGTTAACATTAATTATTAAAATTAATTTTAATATTGTACAAAAATTTTATTTTAGTAAAATGAATTTATTTTTAATTTTCATATTTTTAATAATTTAGTAAATTGAAATAATAATAATAATAATTATTATTATTAATAATAATATTATTATTATTTTCTTTTTATTATTATTATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGTTGTATATAAGGGATAAAAAAGGAAAATGATGTTTTTCTCCCGCAAATCTTCTCTCGTTAGAGGGAGATGATTCTAAGCTCATCCCTCAAATCATTCCTTTCGTTTCTTCTTAAATCTGTGCAAGTGAACAACCAAAATATTTGCAAATACATCTCTTCAAATCTCTTTAAATAGTAAATCTGTGCAAGTGAACACAGGAGATAATTCTCTATTTACACGTTAACAAATGAGAATCATTTGAGTTTGTATCTATTAAATATTAATTTATTTTTCTACGAAATTTTCATTTATTTCTGTTAATTTTTTACTCTGACGTCTTTAATTTAAATAACGTGACTTCTTTCTTTTCAGTGGAATTCAAAACAAAAAAAGAAATGGTTTGATATTATTACGCGTTTAAAAGAGAAGCGTATGTTTAAGTAAACAAGGGAAGCTGCGAAGAGAGAGCGAGAGAGACAGAGGTAGTTTTAATATGGTCCCACCTCGAAAAGCATTCATTGTAGACTGAGATAGTAGCTGGAGTTCTTAGAAATTGTTGCGAATCTCACGGGTTCTTCAATGTTTCTTTGTTCTATTGGAGAAAATCACCATTTTTGAACTACCTCTTCACGGGTTCTTCACGTGTACATCATTGTACAACAGAAGCAACAAACAACTGTGTATCATGCTCTAAAACTCAAAGGTTGTTACGCAGCCACAAACTCCCAA


Gene Sequence:
>Vu_20537(+)
ATGCCACTGTTCTGGATCCTTGTCACCGTCTTCCTCACTCTCCCTGCGCTTTCCCTCTCCGATTCCTGTCCTCTCAACTTCGACCTCGTCCTTTCGAGACCCTCATCGGACTCCAAGACACGGTGTCTTTACATGCGCCAATCCCTTCGTATTCTTCAATCCGATTACCTCCACCGCACCGGTCTCTTCCCTCCTTCCAACGCCTCCTTCTCCTGCTGGACCGCTCTCCAAAATCACACCCACCAATACGACATTCGTTCCTCCTGCAACCTCCCTTCCTCTTCTTTTTCCCTCTCCTGCAACAACATCACCAACCGATCCCAATTCGAGCACCTTTTGCCTCTCTCAGCTCTTGAACCCATACGGAATACTTGTAACCATTCTCTCAACAGTTTCGCAGCTTGTGCTCTCTGCACCAAAGCTTTGTCCAACTTGGACTCCCATCTCACGGACAATACCACTGATTGCAAGATTATTCCTTCTATATATGCTGCTTCCTTCTCCAACCTGCAAGACCCCAGCACTGCTGATTGTCTGTTCAACTTTGGTTTTCCTTCTTCAGTTTCAACTGGTAAGCGTCGAAACATTCTTGTTGCGGCTTTTTGTGTTCTGGCCTTCTTCTTGTTGGTCTTTGGTGTTTTTTGGGCTTACTTTAGATTGAAGAAAAAGAAGAAGAAGAAGGATATTTGTAAAACTGAGATGGGTTTGGGTTCTGGGTTGGATTCTATGAACCAGACTACTACTTTGATTAGGTTCACTTTTGATGAGATTAAAAAGGCTACTAGGAATTTCGCCGGTGATAACATAATTGGGAAGGGGGCTTATGGGAATGTTTACAGAGGGACGCTGGTTGATGGGACTCAGGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATCCTAGCTTCACTCATGAAGTTGAGGTTATTGCGAGCGTTAGGCATGTGAACCTTGTTGGCTTAAGAGGGTATTGTACTGCTACAACTAATTTAGAGGGTCACCAGAGGATTATTGTCACTGATTTGATGGAGAATGGGAGCGTTTATGATCATTTATTTGGTTCTGCTAAGCAGAAACTCAGTTGGCCAATTCGTCAAAAGATTGCTCTAGGCACTGCTAGGGGGTTGGCTTATTTGCACTATGGGGCCCAACCTTCCATCATCCATAGGGATATTAAAGCTAGTAACATACTTCTGGACCTCAAATTTGAAGCCAAGGTAGCAGATTTTGGGTTAGCGAAGTTCAAACCTGAGGGAATGACCCATATGAGCACTAGAGTGGCTGGAACCATGGGGTATGTCGCACCTGAGTATGCTTTGTATGGACAGTTGACTGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAGGGCTCTTGAAATTGACACTGATGGGCAACCCTCTGCAGTCACTGACTTTGCTTGGTCATTGGTTAGGAATGGTAGAGCTTTGGATGTTATTGAAGATGGTATGCCAGAACTTGGTCCAATAGAAATTCTTGAGAAGCATGTATTGGTTGCTATACTATGTTGTCATCCTCAACTATATGCTAGGCCAACAATGGACCAGGTTGTTAAAATGCTAGAGACGGAGGAATTAGTGTCCTCATTCTCTTGTATTGCTGGGAGGATTGATACTGAGAAATCTGTGGAATAA