Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20636 LG5 25279572 25283369 PREDICTED: transcription factor UNE12
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to osmotic stress, regulation of transcription, DNA-templated, response to osmotic stress, regulation of salicylic acid mediated signaling pathway, response to salt, regulation of gene expression, double fertilization forming a zygote and endosperm, regulation of transcription, DNA-templated, response to abscisic acid, regulation of salicylic acid mediated signaling pathway, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of salicylic acid mediated signaling pathway, regulation of transcription by RNA polymerase II, response to abscisic acid, regulation of transcription by RNA polymerase II, regulation of salicylic acid mediated signaling pathway, regulation of defense response
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, protein binding, protein dimerization activity, protein binding, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
A/T 25279661 5_prime_UTR_variant
G/T 25279768 missense_variant p.Ala2Ser
C/T 25279769 missense_variant p.Ala2Val
C/G 25279944 synonymous_variant p.Thr60Thr
G/A,* 25280032 missense_variant p.Ala90Thr
A/G 25280042 missense_variant p.Lys93Arg
G/A 25280103 intron_variant
T/A 25280128 intron_variant
C/A 25280199 intron_variant
C/A 25280214 intron_variant
T/A 25280216 intron_variant
A/T 25280219 intron_variant
T/A 25280221 intron_variant
A/G 25280223 intron_variant
T/G 25280226 intron_variant
T/A 25280227 intron_variant
T/A 25280230 intron_variant
A/T 25281621 intron_variant
T/G 25281652 intron_variant
C/T 25281654 intron_variant
G/T 25281823 intron_variant
T/A 25281913 splice_region_variant&intron_variant
T/A 25282070 3_prime_UTR_variant
C/A 25282434 3_prime_UTR_variant
G/A 25282611 intron_variant
G/A 25282827 missense_variant p.Val283Ile
G/A 25283102 3_prime_UTR_variant
T/C 25283106 3_prime_UTR_variant
T/G 25283115 3_prime_UTR_variant
A/T 25283338 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20636.2
MANNPSDAPADDFLEQILGLPTFASGDSGLSAADVGLSGTTSPAPMMLQLNSADANAHLTGAAFHAPVYQLGLSLDQGKGGFMKPEEASASGKRYRDDVVDGRAKNVFHGQPMPSTMPSAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVKMPLFSSAILLLFSRFGLYL*

>Vu_20636.1
MANNPSDAPADDFLEQILGLPTFASGDSGLSAADVGLSGTTSPAPMMLQLNSADANAHLTGAAFHAPVYQLGLSLDQGKGGFMKPEEASASGKRYRDDVVDGRAKNVFHGQPMPSTMPSAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKLSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSVVKPETNPPS*


CDS Sequence:
>Vu_20636.2
ATGGCGAATAACCCTTCCGACGCTCCCGCAGACGATTTCCTTGAACAAATTCTCGGCCTCCCGACCTTCGCTTCCGGAGACTCAGGCCTCTCTGCTGCCGATGTTGGACTCTCCGGTACCACTTCTCCGGCTCCGATGATGCTGCAGCTCAACTCTGCCGACGCCAACGCTCACCTCACCGGCGCCGCCTTCCACGCGCCGGTGTATCAGTTAGGTCTTAGCTTGGACCAAGGCAAAGGAGGGTTCATGAAGCCCGAGGAAGCCTCCGCTAGTGGAAAGCGCTATCGCGACGACGTGGTTGATGGTAGAGCTAAGAATGTTTTTCATGGGCAACCCATGCCTTCTACTATGCCCTCTGCTCCACATCCTCCAGCAATACGCCCTAGGGTGCGAGCAAGAAGAGGACAGGCTACAGATCCACATAGCATAGCTGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGTTGCAAGAACTTGTTCCTAGTGTCAATAAGACGGATAGAGCTGCCATGTTAGATGAAATTGTTGATTATGTCAAGTTCCTAAGGCTTCAAGTGAAGGTAAAAATGCCATTGTTCTCCTCAGCGATCCTGCTTTTATTTTCTAGGTTTGGTCTCTATTTGTAA

>Vu_20636.1
ATGGCGAATAACCCTTCCGACGCTCCCGCAGACGATTTCCTTGAACAAATTCTCGGCCTCCCGACCTTCGCTTCCGGAGACTCAGGCCTCTCTGCTGCCGATGTTGGACTCTCCGGTACCACTTCTCCGGCTCCGATGATGCTGCAGCTCAACTCTGCCGACGCCAACGCTCACCTCACCGGCGCCGCCTTCCACGCGCCGGTGTATCAGTTAGGTCTTAGCTTGGACCAAGGCAAAGGAGGGTTCATGAAGCCCGAGGAAGCCTCCGCTAGTGGAAAGCGCTATCGCGACGACGTGGTTGATGGTAGAGCTAAGAATGTTTTTCATGGGCAACCCATGCCTTCTACTATGCCCTCTGCTCCACATCCTCCAGCAATACGCCCTAGGGTGCGAGCAAGAAGAGGACAGGCTACAGATCCACATAGCATAGCTGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGTTGCAAGAACTTGTTCCTAGTGTCAATAAGACGGATAGAGCTGCCATGTTAGATGAAATTGTTGATTATGTCAAGTTCCTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCGGGTGCAGTGGCACCACTGGTAACTGACATACCGTTATCATCAGTTGAGGAAGAAGGTGGTGAAGGTGCTAGAAACCGACCAGCATGGGACAAGTTGTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAACGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCTCTCTGCATCATGCCCATCTCACTAGCATCGGCAATTTACCAGTCACAACCACCGGACTCTTCTAGTGTAGTGAAGCCTGAAACTAATCCTCCTTCATAG


Promoter Sequence:
>Vu_20636::LG5:25277572-25279572(+)
TGCCGTCTGCAAAAAGGACTAAATTAAACATAAATTACGTTATTTAGGACAACATTGAAAAGCAAAAAAAAATTGGGACCATTTCAAACAAAATTAGAACCAAAATAAGTATTATACCAAAGAAAAAAAAAGAAGGGAGTAAAAAACAAAAGAAAGAAAAAGTATAATATAAAGTAACGATTTATTTAGAATTTGTTAAAAAAAAAATCTATTATAATAAAGTTGATTAAAATTTGCATAAAAAAATTGCGATACAGGGATATCTACATTTTATAGGTGGGGTCTTTGGCATGATCCCATGAGTATTCAATCATTAAATCTCAAATATAGTAAATAGGTCTCATAATTATCAAATTGATTATATGATTAGTTGAATCAACTTAATTCTAATTATTAGAAAAAATTACAACTTGATGATATATGCATATCTTATGTTACACATCTCTACGGTTCTAATTATATGCCATGATTAACACAAAATGATAGCGATTAAATCATCAATTTTACCGATTAAAATCATATTTAGCTATCTGATTGAAACTCAAATCTATCAATTTCAGAACTCATAAAACATGATTCAAAGTGAACTTGACCCTTCAAATCATAAAAAATATGAAATCCTAATCATGTTTATCATGCATGCAGGAATTATTATAACCCACTAATATAATACAAAAAATCAATAAATCTTGCGTAAAATTTGCAACTAATGAATTAAGTGACCAATCTATTCCGTCAATCATTCTCCCTTTTCCTTAAATGAGAATAAAAAATAGGAGATGCAGTTGCTTCAAAATTGTGTAGAAAAATGAATAAAAATATGAGGGAGAGGAGAGTGCTGCAGATGTTTCTCGTTAGCAACACAAAGAAAATTAAGAAAGTGTGTGTTTAGAGTAAAATTTTGTTACTTAAGTAATCAAATTATTAAATGTTAAATTAATTCATTTTAATTTAAAATGGTTATTATTATTATTATCTGTATATTTGCCAACTTTCACTTCTAGGCCAATAAAATGGATTTTTGGGCTGAAGACACGTCCAGGACCATATATTCACGAAGAAAAAATATTTAATATTCGTCAGTTATAATTATTTATGAAATAATATAAATTTTATCTCAAATATTACACAAGCCACTTTATTTATCTTAATAATAATTTTCAAATTTACTTTTATATTTTAAATTATCATGTAAAATAAAAAACAAAACAATAAAATTGTACAGATTAACCTATACATATATAAAAAAGAATTAATGAGTTTTTCTTCCTATTTTTTTTAGAAATACTTGTGGAGAAATTGATCTCAACGTATACCAAATTGGGGTTGCTTAAGCTAGGTATCTTGTTGGCAAACAAATATTTCAAGACCTGAAATTCTTGAATTAGGACTTTAGATTGGTGTAGAGTGTAGGGTTGAGTTTGCACAAGTGATGCCTTTTCTCAGCAAAAAATTAACAATAATAGAATAGTAAGAATTTGGTAAGGAAAAACGTCAAATAGTTTTAATTGATTGTGATACAAAATGTAATAGAAGGGGAAATGAAAAATATAAATTGAGAAACATAATAATTGTTGGGTCTTGGATGATTGCATTAGGACAATAGGATGCAACGAACACAACATGAGTAGTGTTGTAAAGTATATGTAATATTCATTAAAATTTTATTATTTTAGAACTTATATGATATTTAAAAATGTTTAAATTACTATCTACTTAGGAAAAATGTCTGATATTAATCAGAGGTTGTTTCCAACACGCGATTGGTATTAGATGGTTATGAATTTGTTAATAAGAAAGAAATTGAGGGAAGAAGGAGAAAAGAAGAAGTGTGTAGTAGAAGAACTTCCAAAGTCATTAATGGGAACAGAAATAGTTGGGAAAGGTGGAGAAAGAAAAGAGGAGTGGACTTGGGTGTAAATACCAAAAATAGAGCCCCTTTAGAAGAAAAAAAGAAAGAAAGAAAGGAGAAGCTTTTTTGTAAGCAGGATAAAGACACA


Gene Sequence:
>Vu_20636(+)
ACGCACTCATTGTGCAAAGTGGGAAGCTAACTACCCAGTAGAGAAAAAAAAAACACAGTTAAGTTAGTGCAAAACGAAGAAACAAAACCAAACCAAACCATTTTCACTTTCCGCTTCATGTAGATTCTCCCTTCCTAACTCGTTTACCCGATTCAACCTTGATTCGTCCCGGTTCAAGCTCAAACTCCTACTCATGGCGAATAACCCTTCCGACGCTCCCGCAGACGATTTCCTTGAACAAATTCTCGGCCTCCCGACCTTCGCTTCCGGAGACTCAGGCCTCTCTGCTGCCGATGTTGGACTCTCCGGTACCACTTCTCCGGCTCCGATGATGCTGCAGCTCAACTCTGCCGACGCCAACGCTCACCTCACCGGCGCCGCCTTCCACGCGCCGGTGTATCAGTTAGGTCTTAGCTTGGACCAAGGCAAAGGAGGGTTCATGAAGCCCGAGGAAGCCTCCGCTAGTGGAAAGCGCTATCGCGACGACGTGGTTGATGGTAGAGCTAAGAATGTAAACCTCTACCTTATTTCGACTCTCTTCTTTTTTTATATGATCTTCTCTTGAGACTGAGTTCTGTGATTTGCATCAACTAATTGTTTCGGTCTAATACGAGGGTTTGTTTCAGGCAGTGGTTTTATATGCTTAGAATTACTTTAGTTGAATTGCCAGGTTCAACTTACCACCATTGCATTTGCGTAGAGCAAAGCGAAACGGTTTAAATTAAAGGTTAATGAAAATAGTACCAAGCAGTGGAATGGTGATTTCCTTCCAAATTAAAGTGTATAAAAAAATGAGATTATTCGAGTTTCATGTTGACGGATTTGTTAGGTCTGTGGTTGTGGTTGATGCTAGTCAACTTGGTATAAACACGTCAATAACATGTCTGGCTGTAATTGCCCACGCTGTTGGGTATTTTTGTCAGATTTGTTAGGTTTGAGTATGATTTATTGAGTTAGGTTATTTACACCTTTTGTAGGCACTTATAGTTACCTTCTTTAATCTTCAAACCTCTTAAATCATGTAGTATATTTATGCTCGACTTCGAGTAATCCTTGAATGATTGTTTTCTTGTGAGATTAGGTTATTTACACCTGTTCTCATTCTTACTGGATCAAGTAGCATTTGTTGTACGGTTGATAATTCATAACCCTCTTGTAGGTTTTTCATGGGCAACCCATGCCTTCTACTATGCCCTCTGCTCCACATCCTCCAGCAATACGCCCTAGGGTGCGAGCAAGAAGAGGACAGGCTACAGATCCACATAGCATAGCTGAACGGGTAAGTTTTTAGATGCTTGAATACAAACTGTTTGATTAAACTGCGGGTTAAGGTCGTATCTCACTCTGTCTTCCATGTTACCTTTTTTATTACAGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGTTGCAAGAACTTGTTCCTAGTGTCAATAAGGTATGTGATTTCCTCGTATTGCTAATTGTGGTCTTGCATTTATCATTAGCAAGTGGAATAGACTTTGGTAAAGTAAAGGATTAATCATGAATTGTTAGAAATGATAAAGAGTATCAAGTTAATCTTTACATATATACGTATTTATTACTATTCCCTTTAATTTCTAGCTTGTTGACTTTATAATAACACACAGTTTATGATCAATTTCAATTTGTGTTTAAGCAGATTCATTTCTCGTGAATAAAAATGCATTAGTAAAAACATTATTGCAAGAATAAAAAAAGCAGTGCTAAAAGTGACCCCTTTCAAGGCTTGCTTGTGACGTATCTGTCTTCTTTCTTGGGGGATATTGTTCATTACATACTTGTTTTGTACTTCACCCATCTCCACTCATACTATTGATTTTCATACATTCTGTCTTCCTTTTACAATACACCTTAGAAAAAGCATATGTCATTACTTTTATAACTTTATTGTGAACATTTAACTTTTACAAATTAGGTTGCTTTTTCATGTAAAAATTGCTTCAATTCAAGAATATTAGGACACTTCTGGCTTTTCAAGAGCTTTTCTTTACACAAGGCCTGGTTAAAGCATTGAGTTTATTAAAGCTGAACATTATTGTATAATGCGCGGAGCTTGCCTGAATGCAATGTTTAATCCAGGATAAATAGTTTCTGGTAGTGGAATAACATCTGCATATATCCTGATCTGGCGTGCATGCAAATGGAATTTTTAAGAATACTTAGTGTCAAATAATTGTACTGGATTTCTGCTATGGTTTTGTATGATATGTGTGATAGCTCTGTTTGTGCTGCCTGGCTGCTGAGTGTTTGTAGAAAAAAGATAAGAGTACTGAATTATTTTATTTGTTCTAATATTGTGGTGCATTTCCACTTTTTCAGACGGATAGAGCTGCCATGTTAGATGAAATTGTTGATTATGTCAAGTTCCTAAGGCTTCAAGTGAAGGTAAAAATGCCATTGTTCTCCTCAGCGATCCTGCTTTTATTTTCTAGGTTTGGTCTCTATTTGTAACGGTGACAATTTATAACGACTTATCTTAATTTATTGGACATTGCCTGTTAAATTTGGTAACCTTCACATTTTTATCCCCATGGCTCTGAGAGGTCAATTAGTTAGCGTTCAACTCGTTATCATGAATCCCACAATACGGTGGTGGCCACTTGCCACTTTGGATGAGAACTTGTTGGCTGATTAAGACTGATGAATATCTAAACACAGTCAAATGGTAGCATTTTCATGGTGCTTAGTGCGCTATATGTTTTTTAAACCGTCCAATAACTTTGAAGGGTTTTATGTTGGAATACAGATTACTGTTTGAACCATGGTATCAATATAAAAGCAGAAGGTTTTTCTCTCTAGCCAAAGTTAGCTTTGTAGCAGTGTGAGATTGAGACCGCAAAGGACTTCCAATGACTTGATTCATGTACCTTTCAGGTTTTGAGCATGAGTAGATTGGGTGGAGCGGGTGCAGTGGCACCACTGGTAACTGACATACCGTTATCATCAGTTGAGGTGATTATTGTGAGGAAATAGTTGAAAGAATTTTATTTTTAATATCCTCAAGAGATTTAACGAATTTGGTGATGATCAGGAAGAAGGTGGTGAAGGTGCTAGAAACCGACCAGCATGGGACAAGTTGTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAACGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCTCTCTGCATCATGCCCATCTCACTAGCATCGGCAATTTACCAGTCACAACCACCGGACTCTTCTAGTGTAGTGAAGCCTGAAACTAATCCTCCTTCATAGACCTTAGGCACACATGTTGAGCAATCTACTATTGGTCCCGTGACGGGCTCACCTAATACTGCTGGGACCCACGCCTAACGCATCAAGTTGCAATCAAAGTCAGATGCCATAATTCTTCCTTTTTTCCCTTTGTTTCAGCTTTTGTCAATACAGGGTTCGATGTCAATGCCTTGGAAAATACGAGCAAACCCCTATCTTGTCTTACCGAATTTCAAGTAGAGAGGAAGAAATTGTCAAAAGTTGAATTGATATGCGTCTCTTTTTTTTGTGTCAAATGGTGGGGGTAGTGGACCATGATGTTAAGCGCTTTTGTAGTGGGATGTGGGACCTTCTAAAAGGTTAGAGTGGTGTGTATACTTTTAATAGTGAAGCTGAAATGAACAATAGTTGCTTTAACAATGCTAGGCTATGGCCAGTCTTGCAAAAACTATGATGGTGCTTTGTTTTTTGTTTGGGGCGTGTGTGAGTTGTTTACTAAAAAGTAATTGGACGACTTTTCTCTGTTCTTCT