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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20658 LG5 25544155 25544793 PREDICTED: transcriptional regulator SUPERMAN-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 25544156 start_lost p.Met1?
T/C 25544268 synonymous_variant p.Ser38Ser
G/C 25544382 missense_variant p.Glu76Asp
C/A 25544410 missense_variant p.Pro86Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20658.1
MNSMEGNYLTRNTDKGDRFGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSSWVSECPKPNPSIMPNPTHLSPSSPSSCLSNTNLFNCAHCSPLYSPSLTVSFSLTPPVSLNGDKKPTLASSQFLTLSVPQESEEIKVCKNKEIGLGVEEVQGCAIGEECKVCSSEHSIKLELGIGFLKQPEKLDLELRLGH*


CDS Sequence:
>Vu_20658.1
ATGAATTCCATGGAAGGAAACTATCTGACCAGAAACACGGATAAAGGGGATAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGTTTTTGCAAGAGAGAGTTCAAATCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGGTTGAGATCTTCCTTACCCTCATCATCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTATGCCAAACCCCACTCATCTTTCACCCTCCTCTCCATCTTCCTGTCTATCTAACACTAACCTTTTCAATTGTGCTCATTGTTCTCCACTTTATAGCCCTTCTTTGACTGTGTCGTTTTCACTGACCCCTCCGGTTTCTCTCAATGGAGACAAGAAACCAACACTCGCATCTTCCCAGTTTCTTACTCTTTCGGTTCCTCAGGAAAGTGAGGAAATTAAGGTTTGTAAGAACAAAGAGATTGGTTTGGGAGTTGAAGAAGTACAGGGTTGTGCAATAGGAGAGGAATGCAAGGTTTGTAGTAGTGAACATAGCATCAAGCTGGAGTTGGGAATAGGGTTTCTTAAACAACCAGAGAAGTTAGATTTGGAACTACGATTGGGGCACTGA


Promoter Sequence:
>Vu_20658::LG5:25542155-25544155(+)
TTTCGTATATACTCTTGAAAGTTATAACCTATAATTAAAGGATTACTATTGTTTTTCGCATTTTATTATTCAATACACTTTTCCATTACTGATTCGGGATAGCTGGGATTTTACAAGAAAGGTTATCAATATTGAGAGATAAGAGTTCTAAAACATCAAGGTTATTTAATATGTATATTAATTATATATATTGACTTAATCCTCAGTTAATACAATGTATGATACTGTTATTTAAAAGTTATATAAATAAAAGAATTGATTCAATATTAGACTGTATTATATATGTCAAGGTGATTAGAAATGATTGATGATACTTAGAATGTCAATATAATTTAAATGTCAAATTTTTTAATGTTTTTCATAACTTTATTTAAAAATTATATTATCTTAAACTTTTATTGACTTTTGTAGTGGAACAAACTTGTTCTTTTAACTCTAATACTATTTTTTTAATATTTAAACATGTTATTTATAACTGTTTAATCTTCGTAAACGAAGAAATTAAAAAAAAAAATGTATAAGAATTAAAATAATATATATGAATTAAAATAGGCCATTTTCAATCCTAATATTTTATTTTATAGTGAGTAATCGAGGGAAGGGTCTTTGTCCCATTGTTTGAAGTATGTATTGTTAAATCAAGTTTCATGAGGTTAGTGTGTGATTAGAAATATAGTGATTTGACACTTTAATTAAGTAATCAAATAAATGTAAGTTGAGAAAGTAAGGGTGTCCATATTAAATTAATTTGATTACTATGTATGCTATTTTATACATTATTAATTTTAGATTAAATATCGGTCAACTATAAACAAAACTATATACATATTAGTCTTTATCTTTATATGTGATGATTACTATTTTTTTACTAATCAACAATTTTACATAGTTTTGTAGTTAAGGTTAAGGTGTAATATATTTTTTTTTCTTCAATATTTTGAAAGATATTTCAAAAATAAATTGTAAAGAAATTTCAAAGGTCTTAACACTATAGACCAAATCTCTCTTCAGAGCTTCTATGCGGTGACTTACAAATAAAATAAAAAAGACTAAATAAATATTTAACCTAGAAATTAAAGTTTGTGAAGCATGAAACCCACCTTCTTAATTATCCATTATCATGGGTTTGTTAACACCAATTTTAATTGATGATCTATTTGTGATACATATCTTTGACAAAATGTGGCTTTAGTATATCATAGAATAACTCCATTAATACCCTATGAAGAAAGGATATTTCAGTTTGTATTTCTAATATGTGTTTGACACATACTTTATTGATACTTTCCATCTAACTATCTAATCTATAAAAATGTAATATATTTTTTATGACATTAATTTATAGTTTTTAAAAGTTTAATACATTTGATTTTGAATTTGTATTCATATAATAGTAATTATATATTTATTATGTTTTTAAAAATTGTAATTTTTTAATATATTATTTTTAAAATAATCATATGGGCATAGCCATTGGTAGTAACCAGAAAAAGATTCTTGAATAGTCATTTTCCCCTTTTATTAGGAATTTAAAATTTTGTTAACAGATGAAGGGGAAAGAATAAAGTAGTAAAGTAGGTAGATGGTATAGGATCATTGAGTAGTATATGTTTTTCTTAAGTCAAATTCTGGTGAAAGGCACTAGATAGAGTGTAATATAGTATAAGCATTATTTGCGAGAGCTTTCCAGGTTAAGGCAAAAGGGAATACCAGTTTCACACAGCTTCTCCATTATACTTAGCAGAGAAATATCCAAATACAGTACCTGCAGACGGTGCCAGATGAAGTACGCCTGCTGAGAGAGATCGTCACTTTCTGCCTCAGAGTATATATGAACCTCAGCTTCAACATCAACATATTTATGGATCTCTCTACTCACCACCTTTGAACTCCTAACAAGTAAGAACTAGCTAGATCCATATAACAAAGTCTATTTTTTTAATACCATGTTTCATTTTTCTTTCTTTTTACAGGTGACATTTTTGACAGAACAATTACAA


Gene Sequence:
>Vu_20658(+)
ATGAATTCCATGGAAGGAAACTATCTGACCAGAAACACGGATAAAGGGGATAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCTTGTAGTTTTTGCAAGAGAGAGTTCAAATCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGGTTGAGATCTTCCTTACCCTCATCATCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTATGCCAAACCCCACTCATCTTTCACCCTCCTCTCCATCTTCCTGTCTATCTAACACTAACCTTTTCAATTGTGCTCATTGTTCTCCACTTTATAGCCCTTCTTTGACTGTGTCGTTTTCACTGACCCCTCCGGTTTCTCTCAATGGAGACAAGAAACCAACACTCGCATCTTCCCAGTTTCTTACTCTTTCGGTTCCTCAGGAAAGTGAGGAAATTAAGGTTTGTAAGAACAAAGAGATTGGTTTGGGAGTTGAAGAAGTACAGGGTTGTGCAATAGGAGAGGAATGCAAGGTTTGTAGTAGTGAACATAGCATCAAGCTGGAGTTGGGAATAGGGTTTCTTAAACAACCAGAGAAGTTAGATTTGGAACTACGATTGGGGCACTGA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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