Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20670 LG5 25685196 25685780 PREDICTED: ethylene-responsive transcription factor 1B-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   jasmonic acid mediated signaling pathway, ethylene-activated signaling pathway, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, defense response, ethylene-activated signaling pathway, ethylene-activated signaling pathway, jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, jasmonic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, ethylene-activated signaling pathway
Cellular Component   located in   nucleus, nucleus, nucleus, intracellular anatomical structure
Molecular Function   enables   DNA binding, DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
G/C 25685320 missense_variant p.Gly42Ala
G/C 25685350 missense_variant p.Arg52Thr
G/A 25685527 missense_variant p.Arg111Lys
C/T 25685597 synonymous_variant p.Leu134Leu
G/T 25685602 missense_variant p.Arg136Met
G/A 25685654 synonymous_variant p.Lys153Lys
G/A 25685741 synonymous_variant p.Glu182Glu
G/T 25685767 missense_variant p.Gly191Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20670.1
MDFNSSLFSFNNNATNESSLSLQEHTSDITHDGSNPQPLSIGPTKKERKPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAQRVVESLEDMGFKALRNGVSPLLELKRMHVMRTKSRVSRSGAKKVKRVCSKLKPDPIAETVLVLEDLGPEYLEQLLTFTSPGSWS*


CDS Sequence:
>Vu_20670.1
ATGGATTTTAATTCATCGTTGTTTTCGTTCAACAACAATGCAACAAATGAATCGTCCTTATCGTTACAAGAGCACACCTCTGATATCACACACGATGGTTCAAATCCACAGCCTCTGTCTATAGGCCCAACGAAGAAAGAGAGGAAACCCTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTATGGATTGGAACATTTGACACTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCAGCACAAAGGGTAGTGGAGTCCCTCGAAGACATGGGTTTCAAGGCACTCAGAAATGGTGTCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACAAAATCTAGGGTTAGCAGGAGTGGTGCTAAAAAGGTTAAAAGGGTTTGCAGCAAATTGAAACCGGATCCTATTGCTGAAACTGTGTTGGTCTTGGAGGATTTGGGTCCTGAATACCTAGAGCAACTTTTGACCTTCACTTCCCCTGGTTCTTGGTCCTGA


Promoter Sequence:
>Vu_20670::LG5:25683196-25685196(+)
TAAAAAATAACAAAGATCAAAAATCGTTTTTTAGTACTTACCACATTTAATCATCATAAACCTCCTATAACCAGTCCTCTCAGTTCACCCTAAAAAAACCACCTTTACATCTTTTTCTTAACAGCCAATTGTAACAACTCCATTTAGCATATTTGAACAAAACTAACCGCTTTGTTTATCTATTCTCCCAATTCATTATTATTTCTTTCCAGTTTTAATACATATTTTTGGATAAAAGCACTAGTCAAAAAATTAACATTTAGAATGTTACTTATTTTTATCTTATACTTTCACTTATGTCAAATTAAATATATTTTTTTCATAACCTTTTCATTCCTAAATATAAATTTATGTTTTTATCGTATACACACAAGTATTGCCCACGTACTCTTTAAAGTTGGAATTAGGCATTGATAAGGAAAAAAATATGTGGAAAATATATGGGTCTTTTCAAGAGAGAATAACCAAAAATATAACATTAACCTACATATAAGAGATCAATACCATCTCCAACCAAAAAACTCTAAAACAATAAGTTTATTGATTTTATTTCTTATATGGTGTTCAATTTTTTCATTTTTACTGACTTAAACTCATATTTGGATTTTTCAATAATCTTTCAAGTGAGTCTCTTCACAATTGACACCTTTTCTTTGAGTTAACCACAAATACTTCTTATTTGTATAGCCAATCATTACAATGAGACACACTTGACCCTCCCTCAAGAAGACTATGGATACAAAAATATGTTTGAACCTATCACCAAAACTAATTATCCATCTCTGATATCACTGATGAGTCTTTCCAAAAAAGATTAATATAAAAATACAATACAAATAAGACATGTTCAATCCACATATAAGAAATTGACACTACTTCCATCCTAAAATCTCTAGATAATTTATAGATTTTTTTTCTTATATTGTGTTTAACTTTTTTTCCTTTAATTATTTAACGTGCTATTTAAATTCACACTTAAATTTTTTTAAACTATTATATTCTTATTATTGTAATGCACTATGCTATATAGATCCTCTTATAAGAGATATAAGATGTATATTTGCTACATGGTTAACCGCTAAAGCTCTGACTTCTGCTAGGTTCTATACTATAATTCAATGGAGTAACATTTAGTGCTGCAATTGAGGAATAAGACATGATTGTCCAAAGAAAACTGAACATGTATATAAAGTATTCTGAAATGACAATGTTGTCTCTTCTGATTTTATGAATTATAGTACGTTATGGTTTTCCTATGAGTAATGACATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATTGGTTTGAAAGTTTTTGAAATATTCATGTAAAATACAGCAAATTAAAATTATTCTGAGTGTATAGAAGGTATAATATTTTTCAATTAATAGCATATAATTTATTTTAAACACAACTTTAATATTTGTGTGGCATTATATAGTAAACAAACGACCCAATTAAGTAATTAATTATGCAAACAAGTGAACAAAAATCTTAAAATAGTCAATTCATGCAACAAATTTTCATCGCAGTCATTTCATACTAGAAAGAAAATTCTACGTGTGATGAGGCGGCGCGGTTCAAATTCGTCCAACCTTTCCCTGCAATTGAACCTTTGGTTCAATCCTATGAAATTGCATTATTTGACTCACGTGCGCAAAGTGCAAAGTAGTAGTACTCGAAGCCTAGGAAAATTTAATGAGGACTAGGTCCTATCATTTCTTTATTTCAATTGAACTATATTCTCATAATTTAAAATGCAGTGCCATCCTCCTTGTCCACTATTCTTAACTCAATCTTTCTTAATTAATTCACTCCCAATTTGAACGTCCTTTTTTTATAACCCATTTGTTAATTCAGCTCACAAATCCCTTCACTTTTCACCGGATATATAAACTTCAAGCCTCTTGATTTTTCTATGTAGAAAAAATAAATACAAACAGAGAAGGTAAATTCATATTTTCATCTTCAGAAA


Gene Sequence:
>Vu_20670(+)
ATGGATTTTAATTCATCGTTGTTTTCGTTCAACAACAATGCAACAAATGAATCGTCCTTATCGTTACAAGAGCACACCTCTGATATCACACACGATGGTTCAAATCCACAGCCTCTGTCTATAGGCCCAACGAAGAAAGAGAGGAAACCCTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATACGAGACCCTACAAGAAATGGTGTTCGAGTATGGATTGGAACATTTGACACTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCAGCACAAAGGGTAGTGGAGTCCCTCGAAGACATGGGTTTCAAGGCACTCAGAAATGGTGTCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACAAAATCTAGGGTTAGCAGGAGTGGTGCTAAAAAGGTTAAAAGGGTTTGCAGCAAATTGAAACCGGATCCTATTGCTGAAACTGTGTTGGTCTTGGAGGATTTGGGTCCTGAATACCTAGAGCAACTTTTGACCTTCACTTCCCCTGGTTCTTGGTCCTGA