Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20829 LG5 27398036 27401259 PREDICTED: serine/threonine-protein kinase CDL1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, protein phosphorylation, positive regulation of brassinosteroid mediated signaling pathway, positive regulation of brassinosteroid mediated signaling pathway, positive regulation of brassinosteroid mediated signaling pathway, protein phosphorylation, positive regulation of brassinosteroid mediated signaling pathway, stomatal closure, positive regulation of brassinosteroid mediated signaling pathway
Cellular Component   located in   plasma membrane, plasma membrane, cytoplasm
Molecular Function   enables   protein kinase activity, protein binding, protein binding, protein serine/threonine kinase activity, protein binding, protein kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein serine/threonine kinase activity
SNP Position Effect Amino acid change
C/A 27398142 3_prime_UTR_variant
G/T 27398150 3_prime_UTR_variant
C/T 27398156 3_prime_UTR_variant
A/G 27398157 3_prime_UTR_variant
A/C,* 27398163 3_prime_UTR_variant
G/A 27398378 stop_gained p.Gln363*
T/C 27398624 downstream_gene_variant
T/G 27398626 downstream_gene_variant
G/T 27398627 downstream_gene_variant
G/T 27398785 downstream_gene_variant
T/A 27398791 downstream_gene_variant
T/A 27398988 synonymous_variant p.Ile270Ile
G/A 27399579 synonymous_variant p.Leu104Leu
A/T 27399718 downstream_gene_variant
A/G 27399723 downstream_gene_variant
G/A 27399831 synonymous_variant p.Tyr88Tyr
C/A 27399852 missense_variant p.Glu81Asp
A/G 27399906 synonymous_variant p.Phe63Phe
A/G 27400053 downstream_gene_variant
G/A 27400286 downstream_gene_variant
C/A 27400349 downstream_gene_variant
T/C 27400350 downstream_gene_variant
A/G 27400535 downstream_gene_variant
T/C 27400569 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20829.1
MGWIPCSGYSGTKNKIDKMEVQDSLVGQIKATPGKLKRNTSTNSKDTSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDIPLGKKRLEWNTRMRIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFRDRRKFSQMADPTLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDPNTHTVQNSRLAPGTPPRTRRGL*


CDS Sequence:
>Vu_20829.1
ATGGGTTGGATTCCCTGTTCTGGATATTCAGGCACTAAGAACAAGATTGATAAGATGGAAGTTCAGGACAGTCTCGTTGGTCAGATCAAAGCCACACCAGGAAAGTTGAAGAGAAATACATCCACAAATTCAAAAGATACATCAAAAAATGGGAACCCTGATCACATTGCAGCACAGACATTCTCATTTCGCGAGTTGGCAACTGCAACTAGAAATTTTAGAGCTGAGTGTCTTCTGGGAGAGGGAGGCTTTGGTAGAGTGTACAAAGGGCGTCTGGAAAGTATTAATCAGGTTGTTGCCATTAAGCAACTCGACCGAAATGGGCTCCAAGGAAATAGGGAATTCCTTGTTGAAGTGCTGATGTTAAGTCTACTTCATCATCCAAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATTTATGCCGTTAGGATCCCTGGAAGACCACTTGCATGACATTCCTCTTGGCAAGAAACGACTAGAGTGGAATACACGAATGAGAATAGCTGCCGGTGCAGCCAAGGGATTGGAATATCTACACGACAAAGCTAATCCTCCTGTCATCTACCGTGATTTAAAGTGCTCTAACATTTTGCTTGGTGAAGGGTATCACCCAAAGTTATCTGATTTTGGTTTGGCTAAGCTTGGCCCAGTTGGGGAGAACACACATGTATCAACAAGAGTTATGGGGACTTATGGATATTGTGCTCCAGAGTATGCCATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACCGGAAGGAAAGCAATTGACAATTCAAAATCTGCTGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAGGGATAGAAGAAAGTTTTCTCAAATGGCTGATCCAACACTCCAAGGTCAATATCCTCCGAGAGGACTATACCAAGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCTAACATGCGTCCAGTTATAGCTGATGTTGTAACGGCTTTGTCTTACCTTGCTTCACAAAAATATGATCCCAATACACACACAGTCCAAAACTCACGCCTTGCTCCGGGTACTCCTCCTAGAACCAGGAGGGGGCTATGA


Promoter Sequence:
>Vu_20829::LG5:27401259-27403259(-)
CATTTCTTAATAGAAGATACAGTGATTATTAATTATCATATTAACAAAAGGACTACTATAAAATGTCAAAAGTATTCATAATAATAGTGACATGTTAAGTTAAGAAAAACTTTTTGTTTATGCAGAAAATTAAGAAGAGACTTTTGCTTATAAAGCACATGAATGATTATACTGGTTGCAAAAATTATATGTAGGAAACAAATATATGTTTCTCATTAACTATATAGAAAGAAATATTAGTGACATATTTATGTTAAGTGAGAATTTTTGCTTATTAGTAAAAACGAATGATCTTTTTATTTATAAATCATATGGATGATAGTACTAATTAATTACAAAGTTGATAAATAGAAAACAAGTATACTTTCAAAACTTTATAACATATCTTAGTTTAGTTTTATTTGTATAAAACTAGATTCACCCAATTAATTGACATTGTTGGATAAAAATAATTCATCTTGACCCGAAATGTTCAACAACATTTTGACATATGATATTATATATCTGATATCTTGAATGATAAGCTTTTGATGCATTTTCATAAAAAAAAAAAAAAAGTGTTTCTCATAGTTATTATGTGTATAAGCATGTTTGTTTTGAAGCCCATATTAATGTTCTTACTCGTAAGAAACTAACTATTTCCATCTTAGAAAACCCATTGTCCCCATCTCAATTAATATAGCTATAATTTAGAACTAAAATGGCAATTGCCACAACCATGATCCACCAAAGAAAATAAAAATTGAAGTGCAAAACAGTAACTTATACTTATATGTGTTTTTAATATATATATATATATATATATATATATATATATATATATATATATTAAGAATACAAAATTAAAAATATATATATTATTAATCAAAAGAAATTTGTCAAAACATATATTCCTAGAGCTATTTATATAAGTCGTCCAAGAAATACAAGATATATAATTAACTAGAAACGTTTAGAAATAAATAATGGTGATTTTTTTTGTTATTTTTTTTTAGTATAATTCATTTCTGTTTTAGTTATATATCTATATATATATATATATATATATATATATATATATATATATATATATATATGATTGCATTGCAAAAACAGATGGCACTTTAGTAGAGAGGGTTTACTACCAGCTGTCTCCGAGTAATAGATTTTTTAGAAGCAAAGTCTCTATCCATACTGAAATATTTTCATTATTTTCTTAAGGGAATTAAATGTGGCAGTAACTATCTTACACTCCTTTTTCCGTGAATGGAATGAATGTAAAACAAGAAGAATAAAGGTAGAAAAATAAAATGATTGGCATAGAAATAATGAGAATTATGAAGCAAAGTAATGTGAGAGGACAAAAAGAAGAATCCAAGCTTGGCCTAGTCTCTTAATTTTCCTCTTGAATATGGTTTTGAAAAGGAAAAAAAGGGCATTTGGTAAAACAAAATCTTGTTTCCCTCCAATGAATTACTTCCATTATTGACCAAAAGGGATAGAATGAAAGAAAACATGACCCCATTTTGTAATAATTATAGGAATGTCTTTAATTAAGGTCTACAGCTGTTAGCCCTTGTTCATTTGTGTGCCTAAAGTTGAACTGTGAGGGCGGCCAAATTTTTATCATTCAGATTTTTTTTATCCTTAAATGTCTGATGATAGTTTTTTTAGTAAAGGAGTTGAATCTATATTTTTTTTTTCTTTTAAATGATTTATCTTTTAAATATTAATAGAAGAATTGAATTCATAACTTTTCCATTTTCATTTTAATTTTTACCAAGTTAATCTTATATTTTCTTTATCATTCAGTTAGACTTAAATTGCATCACATGTTGAAATTAAATGAACCTTATTGCTTTTTCATTAAAATGGCAAGTAGGAAATTGTTCCAACAAAAGCACAAAGCATCTAATTTTATAGATTCTTGTTGTAGATCTTAAGCGGTGTGTAGAGGGCAAATAGAAGTGCCAAGCATGACAGAAATTAACTTAATATCAAAGCAATTATTTTATGTTTAG


Gene Sequence:
>Vu_20829(-)
ACAAAAAGGGGAAACATATATAATTTTTTTATGAGATTGGTTTTGGAGTTGATTTTGGAGGTGATCCAGTGAGGCGCATTTGAACCAATCATGGTGTTTTTCCGACCAAAAGAGAAGGCAATGAATAAATTAATGAACTCAACCTAAAACACTAGGGAAATATAAAAACAGAAAATATAGAACACAAGACACAGACACATGATAAAAGTAAACATAGAGAGAGAAAGAACAAAGGCTGTTTTCTAAGTTGTTTTTGTTGCAGTTGGCTGCCCAAGAACCGTGTCGTCGGGTCGGGTCGGGTCCAGAGAGAGTTATTTGCCGTTTCATTTTCTTTCTGATCACGGTGCTGCGTTCATTGAAGGAGAAACAAACATGGGTTGGATTCCCTGTTCTGGATATTCAGGCACTAAGAACAAGATTGATAAGATGGAAGTTCAGGACAGTCTCGTTGGTCAGATCAAAGCCACACCAGGTACTTTTCTTTCTATATTGGAAAAGAGGGAGAAAATTGAAGTATGATAGTGAGACCCTGTTGGAGACAATTGTTCTTTCACTTAATTAAGGTAGTTTCTGGGGCTAGACACTTGTTTCTTGCACAAATTTGTCTCTTGTTTTACTTGGGGTTATCAAGAAATAAAATTTGAGGGCGTTTTATGTGTTTGGTACACCCGATTGCTGTTCTTGGTGTTTAGAGTTTATGAGTATAGGTAGCTGGGATTTGACGTGGTCAATGATTGCAATCTTTTTATTTAATAGCAAAACGAATGATTTTGAGAGTAGGAGGGGTGGAAGCTGCAAACGTACGATCTAGTAATATGTTGTTTTCAGTTATATATATCCTAACCAAAGCCTTTAGTGCTAGTGTGATTTGGATTTGTAGAATGAGTTATCATTTTGATCTCTGTGTTGAGTCGTTTAAGAATGTTTTTTTCTTACTGTCTTGGATACATTTTCTTGATGGTGTGTGCTACTGCACCAAGTTTCAGTCTATAATATTCCATGTACCTGAAATTATCTTGTTAGTTTTCTGAACAATACTAGACTTGTTTTCTTTGAGTCTGGTGATTTCATCAGTTACAAAGTATATATAGCAAGTTTGAATTTGTAATGTTGATGGTAAATTCAAAATGATGCGTAATGCATGCAGAATCAGTTTGTGATTCCATGAGATTGCTTTAACATGTGATGGTATTTTGAAGTCAAATATAACCCTGCTGTAGCTTGTGCTTCTGCCCTTAAATATTTTTCTTGTTGCTTGAATGCAGGAAAGTTGAAGAGAAATACATCCACAAATTCAAAAGATACATCAAAAAATGGGAACCCTGATCACATTGCAGCACAGACATTCTCATTTCGCGAGTTGGCAACTGCAACTAGAAATTTTAGAGCTGAGTGTCTTCTGGGAGAGGGAGGCTTTGGTAGAGTGTACAAAGGGCGTCTGGAAAGTATTAATCAGGTGAATCTCTTTTCTATTTGTTTATGAAAAATAGGAGAGTTGCTGAGAATTCGAGTGATTCTTCCCTATGTCAATGTTCTTCATCTGCACAGATATATCTTCTGACAGCCAGAACAATAGATTAAGTTTTGCTGACATGAAACTCTGCATACATTTTGTGTAGCAGTTTCTAACAAGCTTCATCCTTTATTGTGTTCAATATAGGTTGTTGCCATTAAGCAACTCGACCGAAATGGGCTCCAAGGAAATAGGGAATTCCTTGTTGAAGTGCTGATGTTAAGTCTACTTCATCATCCAAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATTTATGCCGTTAGGATCCCTGGAAGACCACTTGCATGGTATTTGTATTCCAACTACGCAAGTTTTTCCCCATTTCGGTAAATTGAATATCATCTTCATGTTGTTAGTGATCATATATGTTTGATTTGCAGACATTCCTCTTGGCAAGAAACGACTAGAGTGGAATACACGAATGAGAATAGCTGCCGGTGCAGCCAAGGGATTGGAATATCTACACGACAAAGCTAATCCTCCTGTCATCTACCGTGATTTAAAGTGCTCTAACATTTTGCTTGGTGAAGGGTATCACCCAAAGTTATCTGATTTTGGTTTGGCTAAGCTTGGCCCAGTTGGGGAGAACACACATGTATCAACAAGAGTTATGGGGACTTATGGATATTGTGCTCCAGAGTATGCCATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACCGGAAGGAAAGCAATTGACAATTCAAAATCTGCTGGAGAGCAGAATCTTGTTGCATGGGTAAGACACTCCTACAGTTATCTCATCTCCTAAGGTTGGCTGAGTGAAAAGGCTTTTGGTTGAGTGTCATAAACATCTTTAAGTATATTTTCATTTAAACTTAAAAGTAGCCAGGGTCAATGGCATAAAAAAAAATGTCCTCTTGAAGGAAAAGTCTCTTCAAGATGATATTTTTTTTAAAGTTGTGAAACTTTTTAGTTGCATATCTCAGATTGAACTGGCTTTTGCACATCTCATAGTGGTGAAATTAGAATATTTCATAACATGGGTTGGTCCTTGCTCCTTAATTATTTGAGTCATAACTTTGGATGGACCATTCTGATTTAACTGCAGGCTAGACCCTTGTTTAGGGATAGAAGAAAGTTTTCTCAAATGGCTGATCCAACACTCCAAGGTCAATATCCTCCGAGAGGACTATACCAAGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCTAACATGCGTCCAGTTATAGCTGATGTTGTAACGGCTTTGTCTTACCTTGCTTCACAAAAATATGATCCCAATACACACACAGTCCAAAACTCACGCCTTGCTCCGGGTACTCCTCCTAGAACCAGGAGGGGGCTATGATATGCAGCTCATGCTTGGTGGATACAACAAAATCTGGAGAAATATTCAAGTATATTATTTAATGGGCTTCTCAACTATAAGGTATAGGTTTATAGATGTTAATATCAGTTCTCCTTTGGTGGTGTTCTTTCAGTTCATAGTACAGTTCCAAAAATAGAACATAATTCTGGAATTCTGTTCTAGTCCTGTACTCAAAACCGCTTCCATTTATTATGTCTGGAGCTAAGATAGTTGCTCCACCTTTTTCCTTTTGTCCAAAATTTTATTTAAGACAAATTGCTGGACTCAT