Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20835 LG5 27443148 27445064 PREDICTED: protein REVEILLE 8-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of circadian rhythm, regulation of transcription, DNA-templated, photoperiodism, flowering, histone H3 acetylation, photoperiodism, flowering, regulation of transcription, DNA-templated, positive regulation of transcription by RNA polymerase II, circadian regulation of gene expression, histone H3 acetylation, photoperiodism, flowering, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of circadian rhythm, circadian regulation of gene expression, regulation of transcription, DNA-templated, positive regulation of gene expression, regulation of transcription, DNA-templated, positive regulation of transcription by RNA polymerase II, histone H3 acetylation, photoperiodism, flowering, photoperiodism, flowering
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/T 27443243 missense_variant p.Glu32Asp
T/C 27443267 synonymous_variant p.Ala40Ala
T/C 27443353 upstream_gene_variant
A/G 27443646 upstream_gene_variant
T/C 27443752 missense_variant p.Val92Ala
A/T 27443759 synonymous_variant p.Pro94Pro
T/C 27443801 upstream_gene_variant
G/A 27443805 upstream_gene_variant
A/T 27443831 upstream_gene_variant
A/T 27443834 upstream_gene_variant
T/C 27444035 upstream_gene_variant
T/C 27444065 upstream_gene_variant
G/A 27444098 upstream_gene_variant
T/A 27444099 upstream_gene_variant
C/T 27444107 upstream_gene_variant
G/A 27444143 missense_variant p.Asp154Asn
C/T 27444257 upstream_gene_variant
T/A 27444317 upstream_gene_variant
C/T 27444482 upstream_gene_variant
A/C 27444503 upstream_gene_variant
A/T 27444505 upstream_gene_variant
T/C 27444611 upstream_gene_variant
G/A 27444670 splice_region_variant&intron_variant
G/T 27444874 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20835.1
MAMAPSTPSSGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAVHPYPQKESKNVLVPFPASLAYVSPTWDESFLLMSSGSNRSLPYQDELTNLHGDEADIGSKGVTIIGNSCVSDVGNSTRKLSATEIPKQGKQTQVLHGLPDFAEVYSFIGSIFDPDTEGHVQKLKEMDPINFETVLLLMKNLTLNLSSPDFVPVRKAMSSYDANTELRQELMSRNRQRIYNVKQLNKH*


CDS Sequence:
>Vu_20835.1
ATGGCAATGGCGCCCTCAACTCCCTCTAGCGGCTCTGGCAAGAAGGTTAGAAAGCCTTATACCATCACCAAGTCTAGGGAGAGCTGGTCTGAGGAGGAGCATGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAGGATTTTGTTGGTTCAAAGACAGTTATTCAGATTAGAAGTCACGCCCAGAAGTACTTTCTGAAAGTTCAGAAGAACGGGACCGTAGCACATGTTCCTCCTCCTCGTCCTAAGCGTAAAGCTGTTCATCCATACCCACAAAAGGAATCCAAAAATGTTTTGGTGCCATTTCCAGCTTCCCTGGCATATGTTTCTCCCACGTGGGATGAAAGTTTCTTGCTCATGAGTTCTGGATCCAACAGATCACTGCCCTATCAGGATGAACTCACCAATCTTCATGGAGATGAAGCTGACATTGGCTCAAAGGGGGTGACAATAATTGGCAATAGCTGCGTTAGTGATGTTGGGAACTCTACTAGAAAGTTGTCTGCTACTGAGATACCAAAACAAGGGAAACAGACTCAGGTGCTTCATGGTTTACCAGATTTTGCTGAAGTTTATAGCTTCATTGGAAGTATTTTTGATCCAGACACAGAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTGATGAAAAATCTCACTCTCAACTTGTCTAGTCCTGACTTTGTGCCCGTTAGGAAAGCCATGTCATCATACGATGCCAACACGGAATTACGGCAGGAATTGATGTCAAGAAATAGACAAAGGATCTATAATGTCAAACAGCTCAACAAACATTAA


Promoter Sequence:
>Vu_20835::LG5:27441148-27443148(+)
GTCGAGTTATGGCAGGTCGTGCACTTGTGGTGACCTCTACTATTAACCTTCGTACTGTTTATATTTATATATTTGTATCAAAATTATATTTAGTATAAGTATAAGTTAATAAATTTAATCATACATATTTTATATTAAAACACTATATTTTTTAAATATAATTTTTATATTTTCATGTGAAAATTTGTAATGGAGTCAAAATATAATCTTTTTTAGATATATTATTAACGTATGAGAATTAATTTGATTTATCTTATAATATTTTTTTTTATATTTTAAAACTTTTAATTTTGTTCATATTTTTTATTTAAATTTTAATCAATGTATGAATTTTAAATAAAATAAGAAAAGTAATTGTCTTAGTTGAATAATGAATATAATTTTACTAAAATTATGGGGATGTGAGTTTATTATAAAAACTTTAAGGAATGAGAATACCGATTTATTTAACACTTATGTGACCAATTATTTTAAAATTAGATGAGTGTAAATTAGTGGAATGTGAATATTATTTATAATGATCTTATAAGAGGTAATATGTAATATGTAGGAAAATATGTTTATGAGTTTTATATAAGAGTATTTAAATGTTAAATAAATAATATGGAAAATAATTAAGATTACAAAGAGATTAAAGGGGATAAGAACACGTGGAGGTGGATAGTACAATAGATAAAACCTTAAACTAAAGCATTTGTCTTTTTTTTTTTCTCATTGTCACTCTTATTTAAGCCAATAAGATTATTCTTGTATAAATATTCCGTATTTGTTATCTAAATTCACTATATCTATTAAAAAAATATTATTTTAATATTTTAAAAGTAGTTTAAATATCGAGAACATCATCATTCGCTCCCTAAATATATATTAAAAGTGTTAAGATACAAACAAAATCCGGATAAAAAAAATTGAACATAAATTTATATATACATAAATACTTTCATTAATAAAAGATTTTTTAAAATAATATTAAAAATAAATTTGTGAGAGTTTGCCCAGCACAATATCTCATGTTTACGTTGAACCTCCCCCAACATCGTTAACAAAGTTACTAATCAAACCCTCCCAATTATCAAGAACATGTTTTTATACGAAGAGCAATGTTTGGGGACATTAAAAGAAAATATCCTCTTGTAGTTCTGGGGTGGAGCAAATGAAATGAATAATAGGTCTTGGCGCGCCTTGTACCGAACTAAAAAGAGAAGCAGCAGTGGCACATGATTTGTATTAGGTGTGACCCACTGCTCCTTTTCTTTCACTGTCATTTCCTCTTGTTCACAAAAACATTGCCCCCTCTCTCATGTCCCTTCAACTTCTTTCTTTATACCAATCTTCTCTTTAATCTTCATTCTTTATCTATCTAATGTGCTATCCACAATCTACTTACGCCGCCAAACTATTCGACACCATATAACCCTCTTTCATGTCGTCATTTTTTGCTTTCACAACATTTTAACTTTTACTAGAAAGCTGTTTATGTTCTTGTTTTCTGATCAGCTCTTAAAATGTATTGTAATTTGTTAATTCCATTTGCACAAGTGGAACAATTAAAGTGGCAATTTTGCCTTTCGGGTATGCCAATAACATGAGAGGATGAAATGGACATGAAGCAAGTTTGGTTTTGTGGTACTGACCTAACATTTACCACATATGCACCTCACTTAACCACACAATCCAATCCAATCCACCCTCGCCATCCCTTCTTTTTTCTCTCTTTCTCTTCTTAGAAATTAGACTTCAATCTAAAGCAGCATTCAATATTAGTTCATAAAGTTGGATACTTTTATACTCTATTATAGCTATATACCACATTATCTAACACTGAAAAGGATTGGATATTTCAAGCATAAAGTTTAAAAGAACATGCATTCATTGGTAGTCTGGTAACAATGACTAGTTAGGCAAAACAACATTTAGTGAAATGAAGTATGATAACATCTCTCTTTTGTTATATTTAATTTGTCACACTAACTATAGTAACAGTTGAAGTTGTCAACCGA


Gene Sequence:
>Vu_20835(+)
ATGGCAATGGCGCCCTCAACTCCCTCTAGCGGCTCTGGCAAGAAGGTTAGAAAGCCTTATACCATCACCAAGTCTAGGGAGAGCTGGTCTGAGGAGGAGCATGACAAGTTTCTTGAAGCTCTTCAACTGTCAGTTCTTATTCTTAACCATAATGCTGCTTCACTTCACAAATTATTTCCTTATCAGTATTCTAGATTGAGTTATTTTTATTATATTCAACTTCTGGGTAGAAAAGGTGCATAACTCAACAAATTCTTCGGTCGTTCTGATGGTTCAGTTCTTTTTTGGTTTTTGAGAGAAGTGTCAAACACAATCTGCTATTGAATTGCTGACCTTTTCCTTTACATTTTTGGCTGTTCAGATTTGACAGAGATTGGAAGAAAATTGAGGATTTTGTTGGTTCAAAGACAGTTATTCAGGTTAGGAAGCAGTTCTTCAGCTATGTTTTCATGATTTGTGTATTCTGCTATGCTGTTATATGTATCTCTCTGTCTCACCATGAGTTTTCTTCAGATTAGAAGTCACGCCCAGAAGTACTTTCTGAAAGTTCAGAAGAACGGGACCGTAGCACATGTTCCTCCTCCTCGTCCTAAGCGTAAAGCTGTTCATCCATACCCACAAAAGGAATCCAAAAATGGTTTGCTTCTATTTCATACTGTGATGTTCTGTTCTTTAAAAGCACAACAAGCACATTCCTGACATGCTGCTTTCTGGGTTTTGCAGTTTTGGTGCCATTTCCAGCTTCCCTGGCATATGTTTCTCCCACGTGGGATGAAAGTTTCTTGCTCATGAGTTCTGGATCCAACAGATCACTGCCCTATCAGGATGAACTCACCAATCTTCATGGAGATGAAGGCATGCGTGTTTCTTTTTATTCTTTCATATTTTTGGTTCAATTGTTCTGTTTGAGATGAAGATGTACTAAATGGAACTTTCCACCACTTGTTTATGTTATATGACGTCACTGATTCAGCTGACATTGGCTCAAAGGGGGTGACAATAATTGGCAATAGCTGCGTTAGTGATGTTGGGAACTCTACTAGAAAGTTGTCTGCTACTGAGATACCAAAACAAGGGAAACAGACTCAGGTGCTTCATGGTAATGATCTCACATGTATTTGTTCATCATAATATGCTTGCATAGTGAAATTAATAGCTGGTGGTGATTCTCATTTTGGCCAAATTTCGCAGGTTTACCAGATTTTGCTGAAGTTTATAGCTTCATTGGAAGTATTTTTGATCCAGACACAGAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTGAGTAGAATGAAACTTTTTGTAAGGCTTTGTCGTCACATATAAGGCTTGTTTACAGCATAATCGGTAATCTTCGTTAACATTATAAGGCATGTAAAAAGTTTTGTTAAAATAATGAGTTACCTGTCCTTGAGCTTTTTATTATCTCTTTTAGTTGCGATGTAGCAGAGCATTGTTCTTTTTCTGTGTGACTAAGAATTGGTTTACATATTTGGTGCTCTGCAGGTTTTGTTGCTGATGAAAAATCTCACTCTCAACTTGTCTAGTCCTGACTTTGTGCCCGTTGTAAGTTTCAAATTCAAATAAGTCTCAGTCATGTATATCTATCTGCGCTATTTGTGCCCATTTAATGAATCATGTTTGTTTAATAGCCTGTGTCAAAGTATATTTTTCATAAATTTGGAAAGAAATATATTTAATCCAAAGTAATATAAGGAGATCAAATTTCTTTATTGTTTTGACGATTATAGAATGCTAGAGTATTCAAGTTCATTTTCATTGTTTTGTACAGAGGAAAGCCATGTCATCATACGATGCCAACACGGAATTACGGCAGGAATTGATGTCAAGAAATAGACAAAGGATCTATAATGTCAAACAGCTCAACAAACATTAA