Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21015 LG5 29360165 29364105 PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, seed development, positive regulation of transcription, DNA-templated, response to salt stress, regulation of transcription, DNA-templated, response to gibberellin, response to abscisic acid, regulation of transcription, DNA-templated, seed germination, response to abscisic acid, response to water deprivation, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to abscisic acid, seed development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, sugar mediated signaling pathway, response to salt stress, response to water deprivation, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to gibberellin, response to abscisic acid, regulation of transcription, DNA-templated, response to abscisic acid, positive regulation of transcription, DNA-templated, response to abscisic acid, sugar mediated signaling pathway, seed development, positive regulation of transcription, DNA-templated, response to abscisic acid, negative regulation of seed germination, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, negative regulation of seed germination, seed development, positive regulation of transcription, DNA-templated, response to water deprivation, sugar mediated signaling pathway, positive regulation of transcription, DNA-templated, response to abscisic acid
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, DNA binding, transcription cis-regulatory region binding, protein binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
T/A 29360194 5_prime_UTR_variant
T/C 29360394 5_prime_UTR_variant
C/T 29360520 5_prime_UTR_variant
T/A 29360898 5_prime_UTR_variant
A/G 29360899 5_prime_UTR_variant
T/G 29360903 5_prime_UTR_variant
C/A 29360904 5_prime_UTR_variant
A/G 29360905 5_prime_UTR_variant
G/A 29360993 5_prime_UTR_variant
A/T 29360998 5_prime_UTR_variant
C/T 29361074 5_prime_UTR_variant
T/C 29361293 5_prime_UTR_premature_start_codon_gain_variant
G/T 29361449 5_prime_UTR_variant
T/G 29361552 5_prime_UTR_premature_start_codon_gain_variant
T/G 29361620 5_prime_UTR_premature_start_codon_gain_variant
T/A 29361678 5_prime_UTR_premature_start_codon_gain_variant
A/G 29361740 missense_variant p.Glu4Gly
T/C 29361849 synonymous_variant p.Ser40Ser
T/A 29362053 synonymous_variant p.Pro108Pro
C/T 29362140 synonymous_variant p.Asp137Asp
A/C 29362400 missense_variant p.Glu224Ala
G/A 29362450 missense_variant p.Gly241Arg
G/A 29362597 missense_variant p.Asp290Asn
A/G 29362598 missense_variant p.Asp290Gly
G/A 29362919 downstream_gene_variant
C/G 29363116 splice_region_variant&intron_variant
A/T 29363176 missense_variant p.Gln357Leu
G/A 29363345 downstream_gene_variant
G/A 29363361 downstream_gene_variant
G/C 29363365 downstream_gene_variant
G/C 29363663 missense_variant p.Gln388His
T/A 29363717 synonymous_variant p.Pro406Pro
C/T 29363756 3_prime_UTR_variant
T/A 29363807 3_prime_UTR_variant
T/C 29363931 3_prime_UTR_variant
T/C 29363932 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21015.1
MVVEEGEMNSQGEAESRFQQDANKNHHSQFPPSSIGRETSIYSLTLDEFQHSLCETGKNFGSMNMDEFISSVWNAEENQAIITSSNLPLSQPFTDKDPTTLRKQPSLPRQPSLSLPAPLCRKTVDEVWSQIQKEQHDSTNNNEVLDNTESAPRQPTFGEMTLEDFLVKAGVVREQPCAPPQLSHHSHHLQHQQQPQPQQQHYTSNNGAMPGMGSPFVGRNVIGEVSNVVAPGYQVGEASGGYAVNGKRDGGAVFHQQGVSFGGSGYGMGPTMGMGGPVSPANSSDGIGNDCGQFGLEMGGLRGRKRIGDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENSQLRQALAELERRRKQQQIFEELSNISVQTNAQKVKEKDKLRALRRYMSYP*

>Vu_21015.2
MVVEEGEMNSQGEAESRFQQDANKNHHSQFPPSSIGRETSIYSLTLDEFQHSLCETGKNFGSMNMDEFISSVWNAEENQAIITSSNLPLSQPFTDKDPTTLRKQPSLPRQPSLSLPAPLCRKTVDEVWSQIQKEQHDSTNNNEVLDNTESAPRQPTFGEMTLEDFLVKAGVVREQPCAPPQLSHHSHHLQHQQQPQPQQQHYTSNNGAMPGMGSPFVGRNVIGEVSNVVAPGYQVGEASGGYAVNGKRDGGAVFHQQGVSFGGSGYGMGPTMGMGGPVSPANSSDGIGNDCGQFGLEMGGLRGRKRIGDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENSQLRQALAELERRRKQQQIFEELSNISVQTNAQKVKEKDKLRALRRYMSYP*


CDS Sequence:
>Vu_21015.1
ATGGTGGTTGAAGAGGGTGAGATGAATTCCCAAGGTGAGGCGGAATCAAGATTCCAACAAGATGCCAACAAGAACCACCATTCTCAGTTCCCACCATCATCCATTGGAAGAGAAACATCTATATATTCTCTTACACTGGACGAGTTCCAGCACAGTCTATGCGAGACCGGCAAAAACTTCGGTTCCATGAACATGGACGAGTTTATCAGCAGCGTCTGGAACGCAGAAGAGAATCAAGCCATAATAACCTCTTCCAATCTCCCTCTCTCCCAACCCTTCACTGACAAAGATCCAACAACTCTAAGGAAACAACCAAGCCTACCTCGCCAACCCTCGCTCTCTCTCCCTGCACCTCTATGCAGGAAAACCGTGGATGAAGTTTGGTCCCAGATTCAGAAAGAACAACACGACAGCACTAACAACAACGAAGTTTTGGATAATACCGAGTCTGCCCCTCGCCAGCCCACTTTCGGTGAGATGACTTTGGAGGACTTTTTGGTCAAGGCTGGGGTGGTTCGAGAACAACCATGTGCACCACCACAGTTGTCTCATCACTCTCACCACCTCCAACACCAGCAGCAGCCGCAGCCGCAGCAGCAGCATTACACGAGTAACAACGGTGCAATGCCGGGAATGGGTTCTCCTTTTGTTGGAAGGAATGTTATTGGTGAAGTGAGTAACGTGGTTGCACCGGGTTACCAAGTGGGGGAGGCTTCTGGTGGGTATGCTGTAAACGGTAAGAGGGACGGTGGTGCGGTGTTTCATCAGCAAGGTGTTTCCTTTGGAGGAAGTGGGTATGGGATGGGTCCCACGATGGGAATGGGTGGGCCTGTGAGTCCTGCTAATTCTTCTGATGGAATAGGGAATGATTGTGGGCAGTTTGGGCTTGAGATGGGTGGTTTGAGAGGTAGAAAGAGGATAGGGGATGGTCCTGTGGAAAAGGTGGTGGAGAGGAGGCAAAGGAGAATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGCATACACGGTTGAATTAGAAGCGGAACTAAACCAACTAAAAGAAGAGAACTCCCAACTGAGACAGGCGCTGGCTGAGCTCGAGAGAAGAAGAAAGCAACAGCAGATTTTTGAAGAATTAAGCAATATTAGCGTTCAAACCAACGCTCAGAAAGTAAAAGAGAAAGATAAACTGAGAGCTTTGAGAAGGTACATGAGTTATCCTTAG

>Vu_21015.2
ATGGTGGTTGAAGAGGGTGAGATGAATTCCCAAGGTGAGGCGGAATCAAGATTCCAACAAGATGCCAACAAGAACCACCATTCTCAGTTCCCACCATCATCCATTGGAAGAGAAACATCTATATATTCTCTTACACTGGACGAGTTCCAGCACAGTCTATGCGAGACCGGCAAAAACTTCGGTTCCATGAACATGGACGAGTTTATCAGCAGCGTCTGGAACGCAGAAGAGAATCAAGCCATAATAACCTCTTCCAATCTCCCTCTCTCCCAACCCTTCACTGACAAAGATCCAACAACTCTAAGGAAACAACCAAGCCTACCTCGCCAACCCTCGCTCTCTCTCCCTGCACCTCTATGCAGGAAAACCGTGGATGAAGTTTGGTCCCAGATTCAGAAAGAACAACACGACAGCACTAACAACAACGAAGTTTTGGATAATACCGAGTCTGCCCCTCGCCAGCCCACTTTCGGTGAGATGACTTTGGAGGACTTTTTGGTCAAGGCTGGGGTGGTTCGAGAACAACCATGTGCACCACCACAGTTGTCTCATCACTCTCACCACCTCCAACACCAGCAGCAGCCGCAGCCGCAGCAGCAGCATTACACGAGTAACAACGGTGCAATGCCGGGAATGGGTTCTCCTTTTGTTGGAAGGAATGTTATTGGTGAAGTGAGTAACGTGGTTGCACCGGGTTACCAAGTGGGGGAGGCTTCTGGTGGGTATGCTGTAAACGGTAAGAGGGACGGTGGTGCGGTGTTTCATCAGCAAGGTGTTTCCTTTGGAGGAAGTGGGTATGGGATGGGTCCCACGATGGGAATGGGTGGGCCTGTGAGTCCTGCTAATTCTTCTGATGGAATAGGGAATGATTGTGGGCAGTTTGGGCTTGAGATGGGTGGTTTGAGAGGTAGAAAGAGGATAGGGGATGGTCCTGTGGAAAAGGTGGTGGAGAGGAGGCAAAGGAGAATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGCATACACGGTTGAATTAGAAGCGGAACTAAACCAACTAAAAGAAGAGAACTCCCAACTGAGACAGGCGCTGGCTGAGCTCGAGAGAAGAAGAAAGCAACAGCAGATTTTTGAAGAATTAAGCAATATTAGCGTTCAAACCAACGCTCAGAAAGTAAAAGAGAAAGATAAACTGAGAGCTTTGAGAAGGTACATGAGTTATCCTTAG


Promoter Sequence:
>Vu_21015::LG5:29358165-29360165(+)
AAACAAATAAATTTTTAATATTGATAATTTTTGTAACACTTTTTCATTTATAATATTAGAGTCTTGAATAATTTTTCTCTCTTAAAACATCAGTTCAAACTCATGGTGAGCCGGATTGACTCGCAGATTACAATCCATTTTTACAGCACTATCTAAAATCACACTTGTTAATTCTTGTCTAAGTTCAGAAAGCATAAAGAAAGAACATAAGAATCAAATGTATATTGCATAATAAAAAATTACATAAAATTAAAGTACATTTCATCTAACCTACCTTAATGAATGATGAAGTTAGTTACTTTTACACATTTGGAGCCCAAATATAATACATGAAAGATGAAAATGAAGGAAAGACTTTCTTGAGCTCTGGATGAACATATTCTATGGTCTCTTGTTGCATTTTCACACCAAAAATTCTTCCATTTTTGTCAAAAACTTGACTTTTCAACAACTCAGTTTCTTACTAAATAACTATGGATGAGAAGGTGCTTTTTGTGTCATAGTTAATTGTTTTTATTCTTTGGATGAATGGTCTACTCGTTGAGTGAATATCTGATCTTGTCAAATGGATAAGAATATAAGAATATAAATTTATGAAAAAAAAAAACATAATTATCACACAACAGTAATCCAAAAAAAAAGTTTTCCTTCAATTTTCTTCGATCTTCATTTTTTCCACAAAAGTAATCCAGAAAAAAAGTAATTACATCTTTATTAAAAATAAATGTTTAGATCTTAATATTTTTCATAAAAAAATACAAAAATACATTATATAGAGATAAATAAAAAAACCTAAAAAGTATAAAAAAAATAATTATCACACTATCATGGACTGACATAGAAATCATGATATATTAAAATATAATATTAAAAAAAAATAAATAGTTTTAATTTTCTCTTATAGTAATTATTGTTCGATTTATTTGTTTGTATTTATGTTTACTCTAAATTTAACAAGGAGATACATACTGGTTGCAAGAACATAAAGTTGCTAGAGTTTAAGTCAAGAAGGTTTCTTTTTAAAAGGTATATTAAAATAGGTTAACTCTCTAACTATACTAAAAATATGGTTATTTTGTTATTTATATTATTACAAAACTGGAAATGTGACACCCGGACACTGACGAGCGCGGGGAATGATCGCCGGTGCAAGAAGCACGAAGTGCAAGGGACACTGACAAGGAGCGGCTCCTGGCAGGCTTCCAGTGGAAGAGACACATGAATGAATCGAACATACATCGGAATGAGAGAGATCTAGAGACTACATAGGTATGAGATTATACAGTTGAAGGATAGCTTAAAGGGATTGATTTGGCTACTCATATCACAAAATGTATTTGCTTTTCGGTAGCCTAACTCATAAGAACTCCATGATTAAACGTGCTTAGTATTAGTATTCCCTGTAAGTTGCCGGGACATTACAGGAAAAGTCCTGTTTGACTACAATATTATTTAATACAATTTTAAAATAAAAATCATCCAACCTACTAAACTATACACACATTATTTTTCTTTGTTCTTTAAAAAAACATTTTTTATTTTAAATATAAATTAAGTAATAAATGACTAAGATTTATTAAACAAATCTTTGATTTCAACAGGCAACAAAAAAGATTCAAAAGTCCTCAAACTATATGTATGTTTTAGTTAAGAAAAAAAATTGTCTCTTATAGCTATACATATATTGTTGCATATAATTTTTAATCCTAAAACAAAATGAATGTATTTTAAAGTTTTTCTCCTTCATGAATTAGTAAGCCGGGGATAAAATATGAAACACAATTATGAGAAAGAATAATTAATGTGAAAATAGTATAATAATATAATTAAAAGGTGAATAAATAATATTGCAAAATAAAAAAATTTGAAAGGAATACGTGTTGAGCTGAAAAGATATGATGTACAACACAAGTCCACACGTGCGACACCTGTCCTATACGTGTCGAGTAATGTAACCTATTGGGAAAAATATTTGTATCTATTGCAGCATTTGACATTTA


Gene Sequence:
>Vu_21015(+)
ATCTTCTTCATTAATTTTGAATACCTCTTTTTGTGGGGTACCCTGAGCTGGAGTTAACCATATAGACGAAGATCTATCCCTTAAGTTGCAGGGTAGTGTGCCTTTTATGAATCTATTTGCTAGTTTCAGTGTTTCTTCTAAATAAATTTGAACACAATCTCTCCATCTATTTCAATCTCAAAGTTTTAGCACTGCTACAAAAGGAACTTCTTCAATACTTATATCAGTCTCAAATTGAAATTTCAATTTCCAGGTATCTATGTCCCTATGCAATTTTGCAAGATTATTTGTTTCTTTTCCATCACATCAAACTTTTTTTTTCTTGATTCACCATGGATTGTTATGGTTTATGTTTCTTCATCATTTTTTCAGTAACCATTCTGTGTGTATTGATTTTCTTACCACCATTTTCACCAAAGGAGGAAAAATATTCCAAACATTGAAAGTATTCTACTCAATAACATTAAAGGTGTTTTGATCCAAAATTTTATATTTCTTATCAAGGAAATAAAGAATATAATATTTTTTTCCCTCAAGTCATTCTAAAATGGAGCTTAGAAACCCAAACAACAAATTAATTGGAGAGAAAAAAAATGCTTCTTTGAACCAAACCTAAAACAATATTGTTTTGAAGTTATATGAACTCTTGAGTATATTGATGGTGCAATTTTCAACTCTTTTTTGGTGTTGATGGTGCAGATAAAATACTGTATATTTTTTAAGTGAATTTATGTAGAATCAGAATTGGTATTTATCTCTTGATCATCTAGTTTTGGATAATATTAAATAATGGAAGTATGTGAAAAGCATCTGGTTCCACCAAAAAGTGATAAAAATTACCATGGTCCCCACTTGAAATAATTTACTTGTATTAATTGAACATATTAGTTCTAATTACAAATATTAAAGCTAGTTATGTTCTTCTCTTGTGAATATTAATCAATTGAATTTTAGAAAATTCTAATTAAATGTCTAAATTTATATGAATGAATGGTGGTATGAATTTCTTTGATATATACATATAAATTCAAATTATTTAAGATTATGGAGCATTTCAATTGTCAGATCATATTAGAGAAACTGAATTAACTATTATATAAAATACGCATTAAAAACATATTCTAAACTTTGTAACCTTTTAAAATCTTTGTATTTTTTAGTAATAAAAAAAATACTAATCAAGTGGTGGTTAAATAAAGTGACTCTTTCTTAAGAGGGTTAACATATCATGCATTTGTTGTTGTGTGAATTGTAATATATATTCATAAAAGTTTTTGAAGACATGATTTGATTGGTTTGGTGTTTCATCATCAAACAAAATATATTCATTTAACAACTTATAATTAACAACTTAAAATATCTACAAAATAAAAAATCATTTACTGATTTAAAATAATAATACTTTAATCAAATTTATTTGATTTAAAATAGGTAGTAAAATGGCGTAATTTTTTTTAATGAGTACATCATTGTTTATTGTATTATATTTTCTGAATCTTACTTTACATTTGTCTTGTATGTTACTTTGTTCTCATCTGGTCTCTTGAAAGAAGAAGGAAAAGGAGATGGTGGTTGAAGAGGGTGAGATGAATTCCCAAGGTGAGGCGGAATCAAGATTCCAACAAGATGCCAACAAGAACCACCATTCTCAGTTCCCACCATCATCCATTGGAAGAGAAACATCTATATATTCTCTTACACTGGACGAGTTCCAGCACAGTCTATGCGAGACCGGCAAAAACTTCGGTTCCATGAACATGGACGAGTTTATCAGCAGCGTCTGGAACGCAGAAGAGAATCAAGCCATAATAACCTCTTCCAATCTCCCTCTCTCCCAACCCTTCACTGACAAAGATCCAACAACTCTAAGGAAACAACCAAGCCTACCTCGCCAACCCTCGCTCTCTCTCCCTGCACCTCTATGCAGGAAAACCGTGGATGAAGTTTGGTCCCAGATTCAGAAAGAACAACACGACAGCACTAACAACAACGAAGTTTTGGATAATACCGAGTCTGCCCCTCGCCAGCCCACTTTCGGTGAGATGACTTTGGAGGACTTTTTGGTCAAGGCTGGGGTGGTTCGAGAACAACCATGTGCACCACCACAGTTGTCTCATCACTCTCACCACCTCCAACACCAGCAGCAGCCGCAGCCGCAGCAGCAGCATTACACGAGTAACAACGGTGCAATGCCGGGAATGGGTTCTCCTTTTGTTGGAAGGAATGTTATTGGTGAAGTGAGTAACGTGGTTGCACCGGGTTACCAAGTGGGGGAGGCTTCTGGTGGGTATGCTGTAAACGGTAAGAGGGACGGTGGTGCGGTGTTTCATCAGCAAGGTGTTTCCTTTGGAGGAAGTGGGTATGGGATGGGTCCCACGATGGGAATGGGTGGGCCTGTGAGTCCTGCTAATTCTTCTGATGGAATAGGGAATGATTGTGGGCAGTTTGGGCTTGAGATGGGTGGTTTGAGAGGTAGAAAGAGGATAGGGGATGGTCCTGTGGAAAAGGTGGTGGAGAGGAGGCAAAGGAGAATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGTGCATGTCTCCTTTTATCATTTCAATGCAGTGTATGCATCTCAGGTTGATTTGTTATAATTTTGATAATGAATTAATGGCCGAAAGAAATGTGATGGAAAAGTATGTTATGCTATTGTAGTAACCTGAATTTGTCTTACTGCATAATGTCTGGTAGAAACGTGGAAAGGAAGTAGATCGAGCATACACTAGTTTATTTTTAGTAGAGACTCACTTTCAATGACATTAGAATATCATGTTCTTTGAGAACTTGCTCGGAATTCAGACTAAAAATGGCACTGAAAGTAGGAGTTTTTCTGGAAATTTTTGGTGGATATTTGAGGAAGGATTGTATTAAGCTTCATTTGCAGAACCTTATAGGGTTTTTTCCTTCGCAGGCATACACGGTTGAATTAGAAGCGGAACTAAACCAACTAAAAGAAGAGAACTCCCAACTGAGACAGGCGCTGGTACTGCCAAATTACGTTATAGCTTATGCAGAATGTTGAAAATTTTCATCCGTAATTGAGGTATTGGTAATTCAATTATACTGATAAGGATCTCACTTGCATATTTCAGGCTGAGCTCGAGAGAAGAAGAAAGCAACAGGTAATCACTTACTGATGGTCATCTGATTAGCTTGTAGTTAGAATTTAATTACATCATGGGTACAAAAGCTTTGGTTTAGCATGGTCCTTTCCTATTCCATGACCATTATGAGACAGTAAATCAATTGCTAATACTGTCCAATTTAATATGATTTTTTATTTCCCATGACAAAGCTTGTAGAAATCTGTGATATATAGGATCTGGGCTAATGGAGACACCACCCTTTATGTGAAGCAAATAGCTTATAACCTCATCTAAATGTGCCTTTTTGTGATCATTTGCAGCAGATTTTTGAAGAATTAAGCAATATTAGCGTTCAAACCAACGCTCAGAAAGTAAAAGAGAAAGATAAACTGAGAGCTTTGAGAAGGTACATGAGTTATCCTTAGTGAAGAAACGGCATGGTAACCAGTGAAATTTTGTACGCACCAGAGTTTCTTGTGACTAGTATGGCTAAATGAAAAAGAAAGTCAACTGAAGTTATAGCTGGTTGAAGAAACAGAGAAACTAAAGGGCGGGGAAGCTGCAAGAGTTCTCAAATTAAGATCAACGAAGAATGGGATCATCCAATTTGGATGACTCTCCTTATCAAATCATAGTTAATTTCTCAGACGTACAATATATATAGTTTTTGTAATATTCATGTCATTTCATCGTTGACTTGTGTGTGTACGTTCTCGTTTACGCCTATCACACCCTCGCTTTCTAGTTTACTTTATATGTATTTTCAGTATAAAAATATATCGACAATCAATCAAAATTTATTGTTCATTA