Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_21041	LG5	29588445	29589545	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, defense response to fungus, defense response to bacterium, defense response to bacterium, regulation of transcription, DNA-templated, leaf development, regulation of immune system process, response to salicylic acid, response to molecule of bacterial origin, response to chitin, defense response to fungus, response to molecule of bacterial origin, defense response to fungus, regulation of defense response, defense response to bacterium, response to molecule of bacterial origin, leaf development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/T	29589006	intron_variant
A/G	29589045	intron_variant
C/T	29589151	intron_variant
G/A	29589479	missense_variant	p.Gly158Arg

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_21041.1

MDVMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPLNQSFHCVVHVNQLQLRKEFSLCRVYKKSKCLRAFDRRPPPRRNTTRHSIAENGEEQEKGSISTCYDYHQHQMLERSATCSPESSSSGDLDHDHDQPTLHGEGGTQMDVDNDPFLDWEKVDLFLGSES*

CDS Sequence:
>Vu_21041.1

Promoter Sequence:
>Vu_21041::LG5:29586445-29588445(+)

TTATAAACCATTACATTTACATTCCTACTGACGATAAAAATAAAATAAAAATCAGGGATGTTGCAAGGGAAATTTCAGGAATATAGTTTAGTCAATTGGATTTTTCTGACATGTATTTCTTTTAATAGATATTTATGTGAATTCAAAAGTTTTTATCTAATATGTTGTGACATTAGTCTTTAAAAATTTTCAGTCTTATACTATTTTTACGAAGAAATTAATAAATACTAAACGGAAGATTCGTAATGCATATAGTTTATATTTACGAAAAATGAGAATGTAAAATTGAAACATGATAAAAAGAATTTGTAACAAAGATTTGAAATCATATAATAAATTACATATTCTATAAAAAATTTTAATATTTTGTTCTTGAGTTTGTTTATTCTATAAAAATATTATAGCATAAATTATATATATATATATATATATATATATATATATAATTCATTTATTGTACTGTCTAAAGTTTTAATTGTGAAATAAAATAGTATGCATTATTTTCTAACGTCAATTTATAAAAGTATACAAAAATTGAATGATAATTTACTATTGTAATGTTTTTTTAGAAGAAAAGCAAACAAAAAATGTAACTTAATGACAAATATCAATTTTTAAAAAGTACATCGTTTTATATGTTCTTAGTTGTTAGTAGGTCTTTGAGTTTGAAATCCCACAACGTCATCAATGACATGTTCTTTTAAAACCTTAATTTTGTTATTATAAAAAAACAGTTTAATTTTGACTTTTTTTTCAATTAAACAATATTTAATTTTATTGTTTTTTATAAACATATCATAAAATTACTGTAGATAACATAAATACTCAAATATTTGTAAATAAATTTAGTACGGTGGATACTTTCTACTTGTAAATATTTATTATATATAATAATAAATATTTTAATATTAATTTATAAATAAATTAGATGCGGATATAAGAAGAGTATTGATTATCTATAAAAAAATTAAAATTAAAATTTAATTTATATTTTATTAAGTTAAATTTAATTAAAATTAAAATTAATTTATATTTTATTAAATTTAATTTAATTAGAACTACATTTTAATTTATATTATATATATATATATATATATATATATTAAATTTATTTAAATTTTAATAAATTTTTAAAATATATACAAATATCTATAAGTATTTTTTAAATAAATATACAACTAGAAAAAATAATTACAAATAAGTTTCTCAATGGAATAATAAGTACACATCATCAAAAATATTAATATATTAACTTGAACGCTGATAGGTTAACAATTTTTTACCAATAAGCCACATGTCATTATTTTATTAGTATGTTTGAATTTATTTTTAAAAAAATATTTAAAAAGAATGAATCACAAAATAAGTGATAAAAAAATTATAAAAAGAATTATTAAAAAGAACATTTTCCTCTTAACTTAGCCATAAAAGAAAAAGGAAAGAAGGAAGAATTTTGAAAAGAAATGTACGGAAGCATAATTATGCCAGAGACGGTGTAAGCGCGTGGATTGGAAATTTCCTGGCAAATTAACTTAACTAGCCAATTCCTTTTGTTCTCCTTTTCACTCCGATGCAATTTTGTCTTTTACAATCACTTTGCCTAACTTTCTCAGTCATTGATTCCGAGGCCGCGTGCTTTAATTTTAATATATAAAATACGTAAAAACAAGAAAAATATCAAAACTAATTTCTTTTTTATTTTTCAAATGATAAATAAATACAATAATTTAAATTTTAATACAATAAAAATGATAACAAAATTAATATTCTTTTAGACTTCTCACATTTTGTGGTCCTGCGCCATTGTTTTACTTACAGTACCTACTGTTGATTCTCTGAAACCGCTAGTTGTATCTGTTCATCTATATATATATAACATCACGAGGTGTAGTGCTTGAGAACTGGTCTACACCAATAACGAAGAAAACAAGATTATCTGGTCGTTGGTGAGGAAAATATCAGTGAGAGAGACTAAAAGTGTACGATAAAGTGCTCAAAGA

Gene Sequence:

>Vu_21041(+)

ATGGACGTTATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCATAATAAACTCGAAGGAGAAAGAGAGGACATGAATCGTGTTATTCCAGTGGTGGATATTTACGACTACAACCCCTCCCAACTCCCACGTAAACTTCTTATATTTCTCTACTTTTCATTTTTTCATCAATGCAAGTCAAGGATGGTGTTGTGTTTTTGGGTTTCCTGTCAAACATCTATATGTAATTGGTCATAAAATATTAATATTTTTTTATGGGTTTGCAGAAATCTCTGGAGAGGCGAGTCTGAGAGACACGGAACAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAAGCGTCTCACGACCACAGGGTACTGGAAAGCAACAGGGTCTCCGAATCATGTTTATTCTTCGGATAATCGAATCATAGGAATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCAAATGGAGCCAAAACCGATTGGAAGATGAACGAGTATACCGCCATCAAAGGTGAACCATCACAGGTGAGCCATCATCCTCTAAACAGCCCGTTAGGGTTCTTAGATCAACCATTAGACGTTTGAATTGTATAGTATATACATTGCATGAAATTTCATGGATATACAACGCAATTTTATCGTACATGATATTTAGTGCTGTTTTTATAACGGTGGCAGTTAACCAATCTTTTCATTGCGTTGTACATGTTAATCAGTTGCAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCCAAGTGTTTGCGTGCATTTGATAGAAGACCACCACCAAGGAGGAACACAACGAGGCATTCGATTGCTGAAAATGGTGAAGAACAAGAAAAGGGTTCGATCTCAACGTGTTATGATTATCATCAGCATCAAATGTTGGAGAGAAGTGCAACATGTTCACCGGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCATGACCAACCCACCCTGCACGGTGAGGGAGGAACCCAAATGGATGTCGACAACGACCCTTTTTTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCGGAATCATGA