Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21096 LG5 30140580 30145228 PREDICTED: nuclear transcription factor Y subunit A-10-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
T/C 30140769 3_prime_UTR_variant
C/T 30140818 3_prime_UTR_variant
T/C 30141181 missense_variant p.Asn293Ser
A/C 30141346 missense_variant p.Val238Gly
A/T 30141387 synonymous_variant p.Gly224Gly
G/A 30141510 upstream_gene_variant
A/T 30141516 upstream_gene_variant
T/G 30141626 upstream_gene_variant
A/T 30141692 upstream_gene_variant
A/T 30141729 upstream_gene_variant
A/T 30141771 upstream_gene_variant
A/T 30141773 upstream_gene_variant
A/T 30141775 upstream_gene_variant
T/C 30141807 upstream_gene_variant
G/T 30142142 missense_variant p.His188Asn
T/C 30142308 upstream_gene_variant
A/C 30142311 upstream_gene_variant
T/C 30142671 splice_acceptor_variant&intron_variant
G/C 30142683 intron_variant
T/C 30142789 intron_variant
A/T 30142793 intron_variant
C/T 30142982 intron_variant
G/C 30143068 intron_variant
A/T 30143098 intron_variant
G/T 30143103 intron_variant
G/C 30143354 intron_variant
A/T 30143391 intron_variant
G/C 30143531 intron_variant
A/G 30143596 intron_variant
C/A 30143645 intron_variant
C/T 30143699 intron_variant
A/T 30143703 intron_variant
A/C 30143712 intron_variant
A/T 30143906 intron_variant
G/A 30144087 synonymous_variant p.Gly77Gly
A/T 30144133 missense_variant p.Leu62His
T/C 30144162 synonymous_variant p.Ser52Ser
G/T 30144255 synonymous_variant p.Ala21Ala
G/T 30144440 intron_variant
A/G 30144487 intron_variant
A/G 30144497 intron_variant
C/T 30144610 intron_variant
T/C 30144715 intron_variant
C/A 30144804 intron_variant
C/G 30144848 splice_region_variant
C/A 30144911 5_prime_UTR_variant
G/T 30144939 5_prime_UTR_variant
A/T 30144992 5_prime_UTR_variant
A/C 30145122 5_prime_UTR_variant
A/T 30145132 5_prime_UTR_variant
T/C 30145168 5_prime_UTR_variant
A/G 30145179 5_prime_UTR_variant
T/G 30145184 5_prime_UTR_variant
T/A 30145186 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21096.2
MAMQTVYLKEHEGNAPNSVGALSSAASAPWWSAFGSQPVHGVESCGQMKPFSLELPNCINHLAANKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSGNGNGKTGNGVHETVGERFHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGSSVHTLADMIDGGRGMIIPPKWAAAAGNCCNLKV*

>Vu_21096.1
MAMQTVYLKEHEGNAPNSVGALSSAASAPWWSAFGSQPVHGVESCGQMKPFSLELPNCINHLAANKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSGNGNGKTGNGVHETVGERFHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGSSVHTLADMIDGGRGMIIPPKWAAAAGNCCNLKV*


CDS Sequence:
>Vu_21096.2
ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACCCAATTCTGTGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGTGGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTCCTAACTGCATAAACCATCTTGCTGCCAATAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACACACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAGACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAAATCTGGTAATGGAAATGGCAAAACTGGCAATGGAGTGCATGAAACTGTTGGTGAACGATTTCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTGGCAGACATGATAGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTCTGA

>Vu_21096.1
ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACCCAATTCTGTGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGTGGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTCCTAACTGCATAAACCATCTTGCTGCCAATAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACACACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAGACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAAATCTGGTAATGGAAATGGCAAAACTGGCAATGGAGTGCATGAAACTGTTGGTGAACGATTTCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTGGCAGACATGATAGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTCTGA


Promoter Sequence:
>Vu_21096::LG5:30145228-30147228(-)
CCACTTAATCGTGAAATCCTGATAAGAACACCAAGAAAATCAAATACGAACATTTGGTGGTTTTTCACCGGTGCCAGCTAAGCAAATTACAATAGTTTCTATCTAAAAATCTATTGAAAATGTAACAATGCTGGTACGAAGTTGTTTTGGTGAAAGAATCCAAAAGATGAGAAAAGTGGAAGAATATTCAGTATAAATATTATTATGCCTTGTTCATGTTGTAGGTGGATTTCTAGATGTGTAAATGTTTTTTTTTTTTTAATGTAACACTCTTTGTACCATGCTATTTCTGAACCATCTGGTTTCATCGCTGAAATCGAAGTTTATGCACTGATCTCTATGTTATTTCTAAACACAGATCACGATTTTGTCAAATCAGTAAAAGAAAAGCTTAGTTTCGACCAATATTTAAAACTCAATTCAAACTTTTCTAAGATAAAAACTATATATTTGCAAATATAACATGCTACACTATCAACATTACCGTGTCAATAACCTTAATTCAAAAGTAATATGAATAAATTTACATATTTATTAAATATTTGGTATAAAATCTCTGATTGTTTTTAAGTACAAATTAATATTGGCAAGTTTAAGAGATTTTAGAAACTTATTTTACCTGTTCTTTCATATGGACTTGTTATTATTAATGAATATTATTTAATAACGATAAACAAAACTTAAATAGAAGTAATACACTAAAAAAAGTCAAATTACATCGATATAATTTCCATAAAATATTATATTATTAATAATGTTATATAAAATGTAAATTTTGTTAACCTAACTATTTAATTATAATTTTATATTATCATGATTATTCATGCTAAATTATAAAATTAATGACAAAAGAATCAAATTATCAATGTTTTAGTATATTTTGAAAAGTATATATTATGTTGATTTTAATACACAAAAAGAGAAATATAAAAGAATATTGTATTAACATGATTTATTGTAAATATGATTTATGTGGAAGGAATCTATAATCTAAAAGCGAGTTATGAAAAAAAAAATCTAATTAAAAATTTAAACAATGTAAGATTTAATAAAAGTTACATAGATTCGAATATTTTATTTAACTTTTAATGTTACGAAATGACGAAAATATATTTATATATTATTATTATTTAAGTTGCTTGACTACCAGCATTAACTTTTGAATTAGATTCTTAATATTTTTGAAGTGATTTGATTCTAGAAAGAAGAGCAACTAATTATGTTTGTTTCATTAAGAAAACAGGAGACATTGCATGTATAGTAAAATAATGGTTATGTTATGAGGAAGCGTGTTAAGAGCAGAAAAGGGTGATATATATGGTCTGGTGTCCCACAGATATGAATGAAAGTAGTGGAAGAAACGAAAGTGATAGATAACTTTAAGGTAGTTAAGTCAATTTGATTTTCAAAGGGCGTGAACGGTTAAACTTTTTGAGTGTTGGAAACAACAATTCTGTTCACGTATCGCAGAGCACTTAACACTAAAGAAAAATGGGAGATCTAGACAATTTTATTGAGCAACCAAATTTTCTGAATACGAAAATGGGGCAATCAAAGGGTATGTGTGTGTGTGTGTGTAACTAAAATAGTATAATGCTACCGACCCCTCTCATCATCTAATGGACCAAACCAGAGCCTAATAGGCATGCAGAATCAGAACTCAAGACACTCAAGAAACAGGACCACATTTTCTAATATCTATAAACTTAGCATAAGGTGCCTCCTCAACTTGCATTAGTGAGAATATAATATTAGAAAAAAATTGAGACATTGCCACAAATGAAGAGGGTGGTGCTTAAAATATTGCCACCATCCTATTTTGGGTTTTGGAAACTGAGAGAAGAAGAGGAGAGTGAGGTAGAAAAGCAAGTATAATCAATGTTAGATACTACAAAAGATTAGTGGCAGTTAGTGTTATAATTCATTGAAAAATATAATAATAATAATAATAGTATTAAAGAAGGGTCATATAGTACTAAAAGAGATGGTGGAGGGACCTT


Gene Sequence:
>Vu_21096(-)
GGTGTGCATGAAAACCAAAGCTCATTGGCGTGTTATTTTCCAATACACTTGTACGCTTTCATCTCCTTCTTTCCCTTCACTTCCACTTTCTCTCTCTCCTTTCTGTTCTTTTGCTTGAAAGTCTGCCGACATCACTCCAACCTAATGGGGTTGCCTCTATTTCTGCGTAGGATTCGATGCTGCTACTCCTTCTGCACTCTCTATAACCACTGACTTTCGTATGTTAGTCTCTCCCTTTTGTTTCTCCTTCTTGGAGTTAACGGTTATTGTCAACTTCACTTTTCTGTTTCTTGGTGTCTCTGTCTTTTCTTTTTGCTGCTTCTTGTATCTGTAGCTTGCTTTCCTGGGTCTCTCGGTTTATGTATCTCGGTTTTGTACTTGGTATGTATGCTCATATCTGGTTTATTGTTTGTACTTTCAGTTGGGATAGTTGTTGGGATGTGCTTTTCTTGATTGTAATTCCCGTCTTACTTTTGTCTTCTTCTAATTATCTCCGCTTTTGTGTCCCCTTTCAAGCTCTAAAGTCTTCTGTTATTATTGCTATGGCTTTATAGAATAATCTGATTAACTTTTTTTTTTTGTGTTATTAGTGTTATACTTGATTATTGATCAGACATGGAAATTGAAATTGTCTTTTGATGTATATTTCAATTCAGCTTCTCTCTGTTGATGTTTACGCTGAAGACTGAATAAAAATCTGAGGTACATGCTATTTATGTACTGATTCTCCCTACTTTTCTATTTCTTTCTTGGAAAATTTGAGATTTTTGGAAACTGTATATTTGTATCTTCCCCTTGGTCCTATTAGTTGTCTTGCTATGATAGTTGTTATTCCATCCTTGCTTACAGGATTTTTTTTTCTTTCTGCACACCAATACGATTAACTTAGAAATCATCTTCTGGGGGCGCATATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACCCAATTCTGTGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGTGGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTCCTAACTGCATAAACCATCTTGCTGCCAATAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACACACAACTCAGTTTACCATCTTTCCAGGTATTTAATTGTGGATGTGTCTCTCTGGTTGAGTTGTGCAATTTAGTTACATGGGTTTTCACCAAATTAGTGATTGAAATTATTAACTGTTGGAGTTGTGAGTGATACACACAGATATCACTACCACTAGTTCCTGTGCATCCTTTTGGCATAACATTTTGGGAGATGATTATCATGTGAGGTGACTTTATGATAAAGGAAAAGTTAATGATGTCATAACTCTGCTGGGAAAATCTAAAGGGAGAGAAGCTGCAGATATCAGTTTAGGGGAGTGTTTATGAAAAATGTTGAAAATCCATTCAACGTGTGAATCTACCAAATATTTCTAGTAAGGTTTGGTTCCTCAAAATGCAGAGAGTTTTTCTTTTCTTCTTAAACATGTGTACAGTCAAGTAGTGTTATTTTTTGCCATGAACGCAGAACATGGTAAAAGAACTTCAATATGTCGGTTTGCCCTTTTGTTTTGGGACTTATTTTTAGTTGGGAGAAGAATGATATGCAAACAAAGGAAGCTTGATGTTCAGAATGGTGGGTCAGGATCACCAAAAGGAAATAAATTATACATATGAAAGATCTAAGGACTTCAACTTAATTTTTCTTCTTGATTTACTAACGTTGGAATGTGATGAATTTTGCTTATTGATTTGAACTGGTGAAAGTATAATAAAAAATGGCTTCACTGAAAACATTGCAGACGACACTTTAGAGTTTACCCTTATTCTCAATGAAATAAAAAGGTTAACGTACTCACATCGTCTCCGTAGTATAGTATCTCTCCAAACTCAAATTTGTTTCTACAGTCCAAATTCCTTTAAAAAGCCCCTTATAATTTTCAAACAATGCAAAATGGTCCGTATTGCAGTTCCATAATTTCACTCTAAACAAGGAATAAATCCAATTGACATGGTTGATTACCATTGTTTAGCTGATATGGGTTGAAAAGGAAGACCGTTATTAAGATATATGAACTCAGACTTTCACACACAGAGTAGGAGATACACATTCAACCGCAGAGTCTGAAACTATTGTTTTCAAATTTTTGGTATTACGGCTGAAGCCAATTCCTGCATGAAGAGCTATCCCCTCTTCTCATGCTGTCTTCCAAAATTCCATAAAGATATAAAAAATGCAATTTATCGAGTTGTAAGACAGATAAAATGAGATTACCCTTTTAGGTCCTTGTGCTAGCTTCCAACACACTTGAAACTGAATTTTTCGTGGCTTAAATTCTGAATCTAAAATTATATCACGGACTCCAGTAGAATTGATGATTGTTTAGAAAACTACTCTGCTTTTGTTTTTCATTTGTTAGAAGTGACAGTGTTTTCTGTACTTGACACATCAACTTTCCTTTGGGTAACCATTAAGACATTTCTTCTTCAGATGATTGTAAAATGTCAGATGATGCGCAGACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGGTAAAATCTTCTCGAAAAAGTAACCACTTTTATATTTTAGCATTTCGTATTTGTGAGTAAACATATTTTGCTTTTGCTTGGTATCCTTCCCTTTGTAGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGTTTGTCTTTTACTTGAGCAAGCTTCTCTATACATGCTCTCACGTTTGATTTTTCATTTAGTTATCATTTGGTAGTATAGTTTAATCTTTCTCTGTTTACTAAATCATCTATGTATCATCTGTAACAATTCAGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGGTATCACAAATATTTTTTCATTTCATACTAATAATGAACATTGTGTAGCCTCGGCTTCACTGGCCTTGAAACAAAGTAGCTATGACTTATGATAGGGTCTCTGGCCTAACTTTTGTAGAAAGTGGTCGATTATTTCTTTTAAGTAACGTGTACTATATACCAAAGGCGATAAATAGTGCATTTGTTAGGTGCATTCTGCAGCGATCGTAATTGTTCAAATCTTATGATTCACAGTTCAAAACCTACCATTCGATTGGGTTTGACTGTTTATCAGTTTATATCATAAGATGAATCTTAGGTGACTTTGTATCACAGTATCATACTATTCATCTATTTCTTTCATTTTATATGAAAGAAATAGAAAAGATATAAAAGTTTAAAATGTTAAATGAGCTTCACAAACTTAGATCATCTCAGATTCCTCTGTAATTTTAATAGGCAGAAATCATATGACGAATGAATTATGTTATGATATCAAGTACGCTTAAAGTTATTTTAACAAAATAAATTTGATCTTTAAGGTGTTTCTGTATTAAAGGATCCAATCACTCACATTCGATGCTGATCAGACACTGATTACTTGTGAAATAGTACTATTTCCTTTTTAACGTCTGTAGTTATTTGAGTTGTAAATCTGTCTTACAGCCTTATATGCATGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAAATCTGGTAATGGAAATGGCAAAACTGGCAATGGAGTGCATGAAACTGTTGGTGAACGATTTCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTGGCAGACATGATAGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTCTGACAGGAAAAGAATGAAGGGGGGGTTTGGTTCAATACTGCACCGAACCCATCCTTCATGAGACCAGATGAAGAAGCTTTGTTTCAGTTGACTGTGTTGACTGTGGCAAGATTCGTTCTGTAGGATCGTCCTAACATCTGGTCTAGGCAATTCATCCCTGGCTCATACTTTGGCAATCCATCCTTGGCTCATGGTAACTTTAGGCAACTCATCCTTGGCTCTGTAGTAATTTGTCTTTATGCAGGGGAGTGTCTTTGGCATGGTTCAAACTAATGACTTGATACCCTGATGCAGAAGACAACTGTGTGTCTTTGTGTGAAAATAAAAGCATGAAACTCCATTTATGTATATTTCTGCCAAGTCTAAACTTGGTTTTCTATTTTGTATTTAGGAACTATGTATTGCACAACTTTCACCTTTAGTCTTTTTTAAATCAAGGCACTCGTGTGTTTTTCTCCTTTTCAGCAAGTCAAAATTTTATTATCCTGC