Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21156 LG5 30653119 30657833 PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to blue light, response to red light, circadian rhythm, response to light stimulus, response to far red light
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, zinc ion binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/C 30653187 3_prime_UTR_variant
C/T 30653767 intron_variant
A/G 30653783 intron_variant
T/A 30654186 intron_variant
T/A 30654188 intron_variant
A/T 30654197 intron_variant
C/T 30654309 intron_variant
C/A 30654316 intron_variant
T/A 30654374 intron_variant
T/A 30654550 missense_variant p.Arg332Ser
C/T 30654551 missense_variant p.Arg332Lys
G/T 30654579 synonymous_variant p.Arg323Arg
C/A 30654733 intron_variant
T/C 30654739 intron_variant
G/A 30654769 intron_variant
A/T 30654826 intron_variant
A/T 30654968 intron_variant
G/A 30654991 intron_variant
A/G 30655250 synonymous_variant p.Leu293Leu
G/T 30655284 synonymous_variant p.Thr281Thr
C/T 30655349 missense_variant p.Val260Met
G/T 30655354 missense_variant p.Thr258Asn
A/G 30655397 missense_variant p.Ser244Pro
G/A 30655431 synonymous_variant p.Ser232Ser
A/T 30655694 intron_variant
A/T 30655698 intron_variant
G/C 30655737 intron_variant
A/G 30655772 intron_variant
G/T 30655969 intron_variant
C/A 30656044 intron_variant
G/C 30656047 intron_variant
T/A 30656290 intron_variant
A/T 30656291 intron_variant
T/G 30656904 intron_variant
G/A 30656938 intron_variant
C/T 30657119 intron_variant
G/T 30657294 missense_variant p.Pro127His
G/C 30657320 synonymous_variant p.Leu118Leu
A/G 30657323 synonymous_variant p.Asp117Asp
A/G 30657330 missense_variant p.Phe115Ser
G/A 30657353 synonymous_variant p.Ser107Ser
C/T 30657359 synonymous_variant p.Ser105Ser
G/A 30657605 synonymous_variant p.Tyr23Tyr
A/T 30657766 5_prime_UTR_variant
A/T 30657812 5_prime_UTR_variant
T/C 30657828 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21156.1
MTAEAPKPARPCDYCGHSMAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVFCQNCDWEKHNPSLSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSAADGFLGCEIEGFSDLFVWDAPSVVTLDDLISSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELARSEPLDLEQYVQPENLSSAFESDVEWHREMSEPMYQVVPPDPSLRTYTEEVPVKQSTSVGETHTFGDKGGNPSISLNSETLPTTPKAGACELTSQERDYALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEREH*


CDS Sequence:
>Vu_21156.1
ATGACCGCTGAAGCGCCGAAGCCAGCGCGACCCTGTGACTACTGTGGTCACTCCATGGCGGTTCTCTACTGCAGAGCCGATTCAGCCAAGCTCTGTTTCTCGTGCGACCGCGAGGTTCACTCTACCAACCAGCTCTTCTCGAAGCACACGCGGACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCTACCATACTCTGTTCCACCGACACCTCTGTTTTCTGCCAGAACTGCGACTGGGAGAAGCACAACCCGTCGCTCTCCGATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTCACCGGTTGCCCTTCGGTCTCCGAACTTTTATCCGTTGTGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCCGCTGATGGGTTCCTCGGGTGTGAAATTGAAGGGTTTTCGGATTTGTTTGTTTGGGATGCGCCTTCTGTTGTTACGCTTGATGATTTGATTTCTTCTTCCGCTTCTTCTCATAGCTTTCAGGCCATGGAAGTTCCTCCCCTGCCTAAGAATCGTAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAGGTCTGAGCCATTGGATCTTGAACAATATGTGCAACCAGAAAACCTGTCCTCGGCTTTTGAAAGTGACGTGGAGTGGCATAGAGAAATGAGCGAGCCTATGTATCAAGTTGTTCCTCCTGACCCATCATTGAGAACTTATACTGAAGAAGTTCCAGTTAAACAATCCACTTCTGTGGGGGAAACTCACACCTTTGGCGACAAGGGAGGGAATCCATCTATTTCTCTTAACTCTGAAACCCTACCAACTACTCCCAAAGCTGGTGCATGTGAGTTAACTAGCCAAGAAAGAGATTATGCATTGTTACGGTATAAACAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGATATGAATCACGAAAAGTTCGTGCAGAAAGCAGGGTGAGAGTCAAGGGTCGATTTGCTAAGATGGAGCGGGAACATTAA


Promoter Sequence:
>Vu_21156::LG5:30657833-30659833(-)
ATAAACAATACTCAATTATCTTATATTTTTACATGCTTTTCCTAAACTAGACGATCTATCAAATAAATTAGCAAACATAGTAGTTTAACTCGTTTTTCGTAAAAAATTACCTGTCAAAGAAATTTATCTCATTACTTTCCTGGTACTTTATTAAGAAATACCCATAAAAATATATATTTTTTTAATTTTAACAAGTTTATTTTAAAAAATAAGCTTAGAACAGAAAATTAATCTTAAATTATAATATAAATAAAATTACATCAAAAGTTATTAGTCTTTTAAAAATAAGTTTACATAAAATTAATCTCCGGAATAACAAATTTAACACCACAAGGCTAAATAAAGAATATAAAATTATATTCTAAATGATTATTCAATTGCAAATATTTTTTATATTGTTTGAATAAATATATTCTTAAAAAATATTTAAAAAGGACTTACTGTAAAATAATTTTATAAATTACATATCAACTCACTAATAAATGGATGAGTGAAATACGTGCTTACTATTATATTTTTATTTTATACTCAACCTTTACCTATGTTATGTTGGCTCTGCTGTTCCACGAAAAAACTATCTGAACTTGATAACCCCACACCAATTTATGATAGATCTGAAATCTCTAGAAATTCCTAAACTTTTTGAAAAGTAATTTATTGTTTTTAAAATGAGTTTGTTCAGGTTAAAATTCTAAGAAGATGGGTTTTGAAAAAAGAAACCATGAAAAGAAAAACATTATGGTAGTTATATGTCACATCAAGAATCTTTTCCAAAATTTGATAATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATGAATATAATTTTTAGAAGTGAAATCTAATACGAGAGCAGCTCTTTAACCTAATTAATTCGTTTCACTTTTTAAAAATTGTGAGAAAGTATACAAGGTAAGTAAACCTAAAATTAGATATATAATGGTTTTATTTTATGATTTTTAAGGTAAGTATTCATTAAAAATGTTCTATTTTATGATTTTTCGATCAACTTAGACTAGAGGGTTCATATAATTAGGAATGTACAATAAGTAATTTATAGCAGTCAGTCAAACAATATAAACCAAACAATCATCTTTAAATAATAATTAAGATAATAATTAAGATTAATAATAATTAATTTAAGTTAAAATATAATTATTATTAACTGGATCGTGTGCTAATTTAAAGTTTATTTTAAAATTTATAAATATAAATTTTATTTAAGAGATAGATTAATTATATTTATTGTTGAGTTGATCCGAATATTTAATAATTTAACATGAAAGTATTCTTTATAGATAACTTTTCAACCAAAAAAAAAGTGAAGACAAGCTCTAATGCTGACAAATAATTGAATCATAAAACTTAAAAAAACTTATAACTTCGATCGTATAACCAAAACAAATATTATGACTAATGATCATAATTTTTATTTTGCACAGATGTGAGGTTTCGCATCGCAGAATCTTTCGGAGAAATCGGTTTTTTTTTTTTACTACTTTGACTTGGTATGTTTTTTAACAACTGTTATTAGTCAAAATCCAACTTTCAATCACAAGATTATGTTAATAACAATTATTAACGGACAATAAAAAGAATCTGTGATGAACAAGAAAAAAGATCTTTTGGTTTGATTTTTATATAAACACTTTTTGTTAATCATGACCGTCCGTGCTAGAAGTATTGAGAAATTAATTCGTATGGGTCCCACTCTCTTTGGCAAAGTATCTCTATCAAATCAATTTTCAATTAATAAATTAACAATCAGCCTCTTTACATGGAAACTGGCAATTAATTATTCTAATAATCACTACAAATCAAACAAAAGTAATATAGTTCAACAATGAGTATGACTGAGTAACCTGCTTAATTAAATGATTATTATTTAATTTCGAGTTTAGTCACAATCACGGAATTTCATTCCATCCAATTTCAAAAGGACAATTTTTCTTAAAAAAAAAAAGT


Gene Sequence:
>Vu_21156(-)
GAATTATCAAGTAGTTCTTGATCTCCAAGAAAACCAACAATGAATATCCATCCATCCATTCAACCATTCTACAAAGGTTTCTCTTTTCTCAAATCTTCCAACACCTAATCCCAAATTCTTCGCTAAACCCTCACTCACAAAACTCATCAGCATCGCAGCCATGACCGCTGAAGCGCCGAAGCCAGCGCGACCCTGTGACTACTGTGGTCACTCCATGGCGGTTCTCTACTGCAGAGCCGATTCAGCCAAGCTCTGTTTCTCGTGCGACCGCGAGGTTCACTCTACCAACCAGCTCTTCTCGAAGCACACGCGGACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCTACCATACTCTGTTCCACCGACACCTCTGTTTTCTGCCAGAACTGCGACTGGGAGAAGCACAACCCGTCGCTCTCCGATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTCACCGGTTGCCCTTCGGTCTCCGAACTTTTATCCGTTGTGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCCGCTGATGGGTTCCTCGGGTGTGAAATTGAAGGGTTTTCGGATTTGTTTGTTTGGGATGCGCCTTCTGTTGTTACGCTTGATGATTTGATTTCTTCTTCCGCTTCTTCTCATAGCTTTCAGGCCATGGAAGTTCCTCCCCTGCCTAAGGTACTTACATGTATGAATTATGGAGGCATAATTGCTGTAAAAAGAGCGACTTTTTCTTAGAGTTTCGATCTCGTCAAGTTCACAGGACTGAAGATCTGCTGCTAGTTTGATAATTGCCTAATAATGGAAAACTCAATAATAGATACTACTACCATTTTAGAGTTTCAGTTTAGAGGGTGAATAGTTTCTTCTAGTCCAACACACAATAGACTCGACAGATATTATCAACATATTGTCTGATGTCGTCTAAGAATTTGGATTTAAAACTTACCTATTCAACATTTTGGACTTATTACACGTAAATGTGAGATCTTTTGTTCCCTTGTTTGGGTGCTGGAAAAAAGAAAATGCAGTGGAGAGTGAAAAATGTATTTGTTTCGAAAGATGGTAGGATCTTGTTTTCTGAACTTGGGATTGGTTGGTGGAAGAGTGAAAAATGTTAACAACTTTTTTTTTTTTTAATTTAGTTGTGCTTGTCTTATGGGAGAGTGCATGATTCGGATGTCAAAGTAGACATTGAAAAACTGTGTCTATTGCTACAATTTTTGACTTGTTCAGGGTATTGTTATTGATTCAGAATCGTAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAGGTCTGAGCCATTGGATCTTGAACAATATGTGCAACCAGAAAACCTGTCCTCGGCTTTTGAAAGTGACGTGGAGGTTGATATCTATCCTTATCATGAGATAAAGCTTTTACTTCACTTGTTTTGTACTTGTGTTTGCTGGTGCTGATGCCTCATGACGGGTCATTTGTTTTTTCAAACCGTGTTATGCCTGTATGTATGTTTATGTACAAGGGATGGGCTTTTGTGTTTCTAGATAAGGTTTGCTTGTTTTAACCTTTTTTATTTTTCATATTGAATTTATATATGAGAATTTTGTGGAGCATATATTTGAATTTGTTAAATAGGAAGTTAACTGTGATTGTTGTGAGTGTTCAATTCGCATAAAATTTTCATGCAAGATTAACCTTGGGGGGTAGTACGATATTGGCACTAATAGTCCTTGTTACACGATAATACAGTTGATCCCATGAAAATAGTAGTTATACTGAATGAAATCTAGACGAATTATTGCTGAAAGGGTTTCATTAGCGGATTCTCCAACTTCTTGTAAGATTTCTTGGATGGGAACATGACTGATGGCTTGATTTAGTCAAACATTTGACTGGATCTGGTACGAGTATTTTGCTCTTGTAAAATGAGAATAATACCGAAATATGACTTTTCGGGTAGTTAGGTTGCATGTGATGTAATGATGGGTCATGAATCATACTCTGAAAACACTTAAATTTTGACTTTGACTGTAAAAAATCTCACATAATACGTTTTTACTTATTTTCAAATTGAGCTCTGTTTCCCCTACAGAAATTACTAGCATTCTTTTAATTTTGAATTCCGATTTGCTGTTCTGATAAATCTTGCAAAACCTATCGCCAGCAACATATATCTTGCTTTCTTATTTCCTGTGTCTGGCCTTGGTCTCTTCTCTTATGGGCAAGCTAGGTTGTTAGGTTGCTCTTTTAAACCATTCAACGATGCCTTCTTAATTGTGCATGGTGTATGGCATACCTCCTGAAATTATTTAACTGAAAAAATCATTGTGCTGCCATATTGACTATGTATTTCAGTGGCATAGAGAAATGAGCGAGCCTATGTATCAAGTTGTTCCTCCTGACCCATCATTGAGAACTTATACTGAAGAAGTTCCAGTTAAACAATCCACTTCTGTGGGGGAAACTCACACCTTTGGCGACAAGGGAGGGAATCCATCTATTTCTCTTAACTCTGAAACCCTACCAACTACTCCCAAAGCTGGTGCATGTGAGTTAACTAGCCAAGAAAGAGATTATGCATTGTTACGGTATAAACAGAAGAAGAAAACAAGAAGGTATTACTAGTACAGCATCTTTTGCTTGCTCTCTGTGTGTACGTTAGAGGTATTTATATCTTAATTTGTAATGCTTGCTGAGCTGCCCAATTTCTCATGTTAAATTCTCACTAGACCTTCTCCCAACTTTTTACCCCTAACATGCATTGTTATATGTTTTTATAAGTTATTTTCATTTCCATTTTCACAATACACGCCTTAAATCCTTAGACAAATCTTTTATAACAGTGGACACAAGTATAATTGTTGGATATAGCTTTGAGAGATATCAAGAATGAGTCATTATTATCTGACCATTTCCACCAATACGTTGATTTATTAACTGAAAGAGTTCAGCTCAGACTTTTCTGGAATAGTGTTCATATTATTTGTTTTGTTATCGTCATTTACAGTGAAGTGTACTGTGTTTCTGTAATTAACTAGGCCTTGTAATCTCCTTGCTATATAAAATGGTTGTTGGCTTGTTGATTAATATGGATTGTGAACTGCTAGCATTTGTGAGTTCTGATCTTGTTGATTGGTTTATGAATTTGTGAAATCTTAGATTATTAAATTGACATACTTTTTATGGAAAACAACAGATATGACAAGCACATAAGATATGAATCACGAAAAGTTCGTGCAGAAAGCAGGGTGAGAGTCAAGGGTCGATTTGCTAAGATGGAGCGGGAACATTAAAATGGTAGGCTGGTATGACACCATAACTATAATTCCCAGCTCAAATCACATACATTATGTAACACGTCTCTTGTATGTTGCAAGTGATGCATCCTTGGATCCAGAGCTTGGATATTATATGCAGACATTTTCTTGCAATATAGTTGGCACTAGTCTTTTTACTATTCCCTTTGCACCATAATGATTGCACCTGAGGTAGACGAATAGGTGCAGTCTGCTGTAAACCAAAATCTAATTCACTGGGGTCTTTGGCCTTGAATCGTGTTTGGAGAGTCTCTTGTGGACTTCGATTTTTGTCATGTTGATTATTAAATAATTGATGAAAAAATTTAAGGTAAATTGCGGACTCCTTAAATTGGTATGAAGAGGTGTTGAACATTCCATGAGAGCAAATGAAAGCAAGTTATACTTTTCTTAATGTTTGGATATTCTGAGAATGTGAAAGCTGAGGTATAACACAGCTGGCAAAGTGCTACCTAAGGATTTGTGACAAGAACACCTTGTATCTTCTGCAATTTCATTGTTCCTTGTTTTGCCAAGGGGAATATGTTACTGTATCTGAACTCAGCCCAGTCTGCAAGTGTTTCCCAAACTTTTAAATTTCTCTTAACGGAATGTGCTTTCAAGTAGTTCTAGAACAATAAGTACTGACAAGTACTGATTTAGCAAAAAATGTGCAAATAGAAGTGTTAAGTGCACATGCAAAGGACACAAACTGTCTAATTTATCAGACTAATTGTCTGGTAAATACTGAAGTATGTGTTGCTGAACAGCATTTAGCTCTAATAATCTAGGTAAGCGATAGAATCTGTTCTTTCTTCATGCATATTGCCAGGTTATGTATGCAACTTTCAGTCATAATTTAGTCCATTGGCAATTTGATTGAATGCAATGCGGTTCTTGTCTTCAAGGAACCTCGCAATTTAAAAAAAAAAATTGTATGTTTTGATCTCATCTTATAAATCTGATAATGTACTATCGTCTCTTCATTTCCATATCATGTCTGCTTAAAGCATTGATATCGTGTTGGACAGATATCTTTAGCATTTGAAGTATATATGGAGCAGAAAAGATACATGGAGAAGGAGTTATTTTTGCGGGCTAGCGCATTCTTCTGTGGTTTTAGAAACACGGTAGCTTGGATGATGTTAACGTTCCAGCAAAATGTAAGCTTGTACAAATGTTTTTCCTTGTTACTCATTAGAGAAATGCTAAAAACACATTGTCTGACGCATTCTTTGTCCTTGTAGAGGTGTGTTTCTAGCACTTTTCTAACTCTATGAATGCTAAAATGATATAGGATGTAGAATGTTAATTGTTGACATTTCTCAGATATTTACGAAAGTGTGAGGTGTATATACCAAAATAAAATAAATAAAATTGCGTGAATAC