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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21257 LG5 31424069 31424623 PREDICTED: zinc finger protein 6-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 31424422 synonymous_variant p.Pro118Pro
C/T 31424450 missense_variant p.His128Tyr
A/G 31424461 synonymous_variant p.Ser131Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21257.1
MSDNHKTQSSAPKLFGFPLTEQEEFAERKYDVGEDRKFRCHYCNRVFANSQALGGHQNAHKKERQRARRFQIHNHRRSSMPPPSSSLSVTPLTFLTPHAIIRSLPLSVTLPPIYLSSPSPSTFTSAKHFSSRPVFVPSSTHLTATATATPCFPLQLYASPSVLQSASTVLDFAADREVDVHLKL*


CDS Sequence:
>Vu_21257.1
ATGTCTGATAATCACAAGACTCAGAGTTCGGCACCGAAACTGTTTGGTTTCCCACTAACAGAGCAAGAGGAATTTGCAGAAAGGAAATACGATGTTGGAGAGGACAGAAAATTCAGGTGCCACTACTGCAACAGAGTTTTCGCAAACTCCCAGGCCTTAGGGGGCCACCAAAACGCTCACAAGAAGGAGCGTCAGAGAGCCAGGCGATTCCAAATCCACAACCACAGACGCTCCTCCATGCCACCACCATCATCATCTCTTTCGGTTACGCCTCTTACCTTTCTCACCCCCCATGCAATAATAAGATCGCTGCCACTTTCAGTTACACTGCCACCCATTTACCTTTCATCTCCTTCTCCTTCTACTTTCACCTCTGCAAAGCACTTCTCCTCACGCCCCGTTTTCGTTCCTTCCTCCACCCATCTCACTGCTACTGCTACTGCTACTCCATGTTTTCCTCTTCAGCTTTATGCTTCACCTTCTGTGCTGCAATCTGCTTCTACTGTCCTTGATTTTGCAGCAGACAGAGAAGTTGATGTCCATCTCAAATTGTAG


Promoter Sequence:
>Vu_21257::LG5:31422069-31424069(+)
AATAAAATTTGTGAGAATTAGTATAGAATTGTATTGACGTGACAAATTAAAAAAATTTATTTCTAAATTCAGTCTCATTTACCTCCAAATTCACTCAAATAAACGACAAAAAAATTTATCTTCAAATCCTCTCAAATCCCCTCAAATCCACTCTCTCAAATTCACTCAAAAGAACAAGGCCTTAATAATATTTTGTTTTTTTAACTTTAATCATTCAAATATGAACTCTATTTATAATTTATTACGAAAAGTTAACATTCTCACGACACTCTTTGTATATTTTACTTATTAAAAATAATAATTAAATATATTTTTAGTTTTTAAAAATTTAAAATTTGATATTTCTAAATTTTAATATAATTAGATCTTTAAACATTAAAAATAAATAAATATAATTTTTTAAAAATCAATTATCTGAAATTTGTTGATGTATGAAATATTTTATACTAAAATTTAAATTTTTTATACAATTTAACAGGTTACACTTCAAATGCTGAAAATTCATTGAACTCATAAACAAATTTAATGCATTTAAGTCTAGTTGACTATATTTATTCAAACTAAAAAGTTTATTAAAGTTGGAATTTGAAATAGAGACAAATTTCAATTTGGAACGTTTAATTCTTAAAAAAACATATTGTTTAAGCAACGTTAAATCCAACAATTTAATGCATAGTTTATAGTTAAAAAATGAAAATTGGAAGTAAGAAGAAGGTGGTGGAGTTTAGAGGGGAGGCAAAGGTATAGGTGTATCTAAGCTAAATCCTTATCCTGGGTTCCCATCTCCACGCGCTATGAATAAGCCAAAAGATCCATCACATCAGAACCGGGTTTGTCTAATACCTATACAATACGACCGAGAAGGATGTTTGTTACCATATAGACGTCAGCCATCTGTCTGGCTCGACTTCAAGGAAGATATGTCATTGCATACATTGAATTCAACCATCACCCATTCATGTATGTATGTTCTCTTGAGTGCTTTATCAATTAACCAAAACTGTTGAGAGAAACGTGGGTTTACCACGCAGCAGATGGTAGCAATATTCAGGCACTACACAGCCACGCCTAGTCCATTCACTGATGTAATGGGAGTACACTGGCTCGACCTTTGAATTGAAGCAATGCATCATTAAAGCAAATTCGACAGACAAAAAGCAAGTGACTAAAACCACATAGGTTTTTCCATTAACATGTAACGTCACCCTTTTTCGACCACTTCCTTATGATTTCAACAAATATATGCCTATCGTATTTTGCATCTCACAGCTACGTCTGTGCAGTAGCATTTATCAAAAGGAGTTCAAGTAGATTTAACAACGGCAACTCCAGAGTCCGGACAAGTGGATCAAAATAATGTGTTCAAGGGAAAATGGGACAAGGACAAAACAGATTCAAGATAAGTGTGTATATCGTGCTAGTAACTTTTTTTTTTTAACTTTCACACGTTCAAAGGCCTGTGTCCTGTTGTACTCTGTGGCACGATCTCTCTCCAGGTCCCTTTTTATTGATACATGAATCTTATCAGAAGCTAAAAACCATTAATTCAAGCCTTTTGTCACATGTCGTTTTGACAGACATTCGTGTACTACGTCGGTACGTATACTTTTTTGTTGCTTCCTGTGTATCTTATATATTATTTTCACTGTTATAATAATCAGTTAAATATATACCATCTAACGGTAAAGCGCAAAACAAGAGCACATTACTTTTAAAAAATATATTACTTTTGTTTTTTTTCAAAAAGATTTAAAATTTCTATATTAGCTTTTATTAAAAAAAAACAACCGTTTATTGCTAGAGGTTAAAAGTAACAGTCAGTTAATGTAATTGGTGGATGGTGACAACCAGTGGGTATGGTAAAGTATTTTTGTAAGGTTGTAGCGTGGGAAGGAACAGGCCACCCAAGAAGATAATCACAGAATTAATGTGTATGTGTGTGTATATATAGGGCAGCACAGATAAGAAGAGTTTGAATGCATTGAGATAGAAAAGAAACA


Gene Sequence:
>Vu_21257(+)
ATGTCTGATAATCACAAGACTCAGAGTTCGGCACCGAAACTGTTTGGTTTCCCACTAACAGAGCAAGAGGAATTTGCAGAAAGGAAATACGATGTTGGAGAGGACAGAAAATTCAGGTGCCACTACTGCAACAGAGTTTTCGCAAACTCCCAGGCCTTAGGGGGCCACCAAAACGCTCACAAGAAGGAGCGTCAGAGAGCCAGGCGATTCCAAATCCACAACCACAGACGCTCCTCCATGCCACCACCATCATCATCTCTTTCGGTTACGCCTCTTACCTTTCTCACCCCCCATGCAATAATAAGATCGCTGCCACTTTCAGTTACACTGCCACCCATTTACCTTTCATCTCCTTCTCCTTCTACTTTCACCTCTGCAAAGCACTTCTCCTCACGCCCCGTTTTCGTTCCTTCCTCCACCCATCTCACTGCTACTGCTACTGCTACTCCATGTTTTCCTCTTCAGCTTTATGCTTCACCTTCTGTGCTGCAATCTGCTTCTACTGTCCTTGATTTTGCAGCAGACAGAGAAGTTGATGTCCATCTCAAATTGTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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