Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21337 LG5 32130881 32132331 PREDICTED: transcription factor MYB86-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root development, phloem or xylem histogenesis, root development, regulation of stomatal movement, seed coat development, seed coat development, regulation of stomatal movement, xylem development, seed coat development, seed coat development
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 32131244 intron_variant
T/A 32131469 synonymous_variant p.Ala68Ala
G/C 32131488 missense_variant p.Asp75His
C/T 32131596 stop_gained p.Arg111*
A/G 32131815 missense_variant p.Arg184Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21337.1
MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKHGHGCWSSVPKQAAQLPGRTDNEIKNLWNSCLKKKLRLRGINPVTHKPLSEVENVEEEKTTSQELSNELNLLNSESFKSDEGSFEQRASSIAPKAYEMEGSCSSKINTKNDTNLIANCSNKDLFLDSYTTSCQPSDLMGNYPLQMTDTLPTNSDSNHWFSPTARPIDINSEFTSNVMSILPPTTTSFLPSTSFCYKPSLAVPPEDISAPSFALNGPNYWEPSASNNSNGSNTSDGSREFTSSKNSVLSSWGLTEEAKWSEYLHNPMLMLAAPESLCNQIRPATHLVPDNTLGSIISGSKEQHQSQTSAIFSKDIQKLTAAFGHI*


CDS Sequence:
>Vu_21337.1
ATGGGAAGGCATTCCTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTGTGGTCACCAGAAGAGGATGAAAAACTTCTAAGGCATATCACTAAGCATGGTCATGGTTGTTGGAGCTCGGTTCCTAAGCAAGCAGCACAATTACCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTTAAGAAGAAACTGAGGCTAAGAGGTATAAACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGTTGAGGAGGAGAAAACAACGAGCCAAGAATTATCCAACGAATTGAACCTCTTGAATTCTGAGAGCTTCAAGTCAGACGAAGGGTCCTTTGAGCAGAGAGCATCTTCGATTGCCCCCAAAGCCTATGAGATGGAAGGTTCCTGCAGCTCCAAGATTAACACCAAAAACGACACCAACTTGATAGCCAATTGTTCCAACAAAGACTTGTTCCTAGACAGCTACACCACTAGTTGTCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATGACTGACACTCTCCCAACCAATTCAGACTCCAACCATTGGTTCAGTCCAACTGCAAGACCCATTGATATAAACTCTGAGTTTACTTCCAATGTTATGTCCATTCTTCCACCTACAACAACCTCATTTCTCCCTAGCACTTCTTTTTGCTACAAGCCATCACTTGCAGTCCCCCCAGAAGATATTTCAGCACCTTCGTTCGCTTTGAATGGACCCAATTACTGGGAACCCAGTGCCTCCAACAACAGCAATGGCAGCAACACAAGTGATGGCAGCAGAGAGTTCACAAGTAGCAAGAACAGTGTTCTTTCTTCGTGGGGACTGACAGAAGAGGCCAAGTGGTCTGAGTACCTCCATAACCCAATGCTGATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGGTACCTGATAACACTTTAGGGTCCATAATTTCTGGTTCCAAAGAGCAACACCAGTCACAAACTTCTGCCATCTTTTCCAAGGACATCCAAAAGCTAACAGCAGCGTTTGGACATATATAA


Promoter Sequence:
>Vu_21337::LG5:32128881-32130881(+)
TCCATTTTTAATTATATGCAGAAGCTTCTTAATTGTTATCTCAGCTGAGTTTCTGAGCAAGGATACACATAATAAAAAAAGGTGCAGAAAGCAAGAATGGTAAGCTAAAAGAAAAAGAAAGAACAGAACATGGAGAATGAAGCTGTTGTGCTTTAGTTTCATAAAATATAAATATACCTGCTTTTTGTGTATTTTTGTATGCGTACATGATGGAACGAATCTAAAGTATCATCGCTATCGTGCTTTGTTCTTTCTCTTTTCTGTTTTCTTCTTACCTTTTCATTATTCAAAATTAATAATTTAATTCAACCATAATATATTTCGTTTATAATTTCTTATCAAATGGGGCAGGGCCATTTTTTTTACAGAACATCAGGTTTACGCTTTGAAATGTATCATGCCTTAAACGATATTAACCTTTAAATACTTTATAAAAAGTCTTACAAAAATCATTTTATTTGATACAAAATATTTTTTTTTAACGAACAATAAGTATCATTAATATGACAATTATGTTCCAATAATAAGTGATGAATACCTTTTTATGACAGTTGTATAATCAGATTTTTAATATAAAAAGTAATGTAATATTTATTTTAATATTTAATGACAGATGCGACTAGTCAATATTAATAGATATATTTAATAGTTTAAATACATTTTCGGCAATTAATTAGAGAAGAAAAACCAAGCACTTTCTCATGATTTGTTCAAAGAAAAACTGCATATGTGGTGAACATACATGCCAGTGGAATGGTTGTGGACTTGTTGAAATTGTAATAAATTCATTGATAAAGTTAATATAGACTAATGCACTCAAATATTAGTTGTCTATGGAAAAATAAAATAAAATAAAAAAGTAAGCTAATTTGACGGAGAATTGGTAAAATATTTTCCAAAATAAAAATTACTGGAAACTAGAAGCATAGTAGGTGAAATGAAAGTAAAAAAAAAAATAACAAATCCTAATTTAATTCTATTCCACTAAATAAATGAAAAAAATATTTTGTGTGTGAATTAAATGATTTTTAGATTAGAATGAATAAAAAACATAATTCAATCTCATAAAAAAATTATAAAATAAAGTTTAATTATATTTATATATTATAAATTGATTTTAGATTTACTTCCAACAATTAAAAATGTAAGTATTTTATGTTGGGATCCATAACGGTGCTCCGTATAAGATTAATCAACACTCCAACTGTTTGTATTATGTACCAAAAGAAGTTATATTGTAACTTGTTCTTATTTCTTTCCTTCCTCCTATAACTCTTGGAACATATGCATTTTCATGCTTCACTTACAAGCATGAATTGTAGTAAGATAAGTCTTTCCATTCATAATACTACCACTGAAATTGCCCCACCTTCCTAAAAGAGACATCAACATTCACAAGTCATACAACCGATATGACATGCTATACTGTTTTTTTGGGTAAGCCCAAATTACTTTAATTCAAAGCTAAAAACTATTTTTTCAAATATTAATATTTTCTTAAGCAGATAGCTCTCTTTCATTTTTCCATACATTGATTTAGATATTAGATATTAGATATCTAGTACATGTGTTGATGCTTGGAATATAGTATGCGTATGCCACTACACTGTTTCTTAACCCCATTTTTCTGATTTTATCATAAAGCTAAAATGAAGCTTCCCTGGCTCCAAATCCATCTCATACGTACACATACTTTTAAGAGAAAAAAGAAAGAAATAGAAGGAACCTTAGTAGCAGTGAGTACTGATTATGACATCTCTTTGGGACCTTCCTCTTATATTAATTCAACTCCTTTTCTTAGCTGCCACTTCATTTTCCTGTCTTCAATTCACATAATCTCTCTCGCTCTCATATTCTCCCTATCACAGACTGGCTCAGTGCCACTCCTGCTGACCTTTCACCTACACCTACACCTACACACAAGTTCAATTCAAGAACCTATCAGTTAATTGGAAAGGTTCACCCCTTTGGTGGGGTGAGAAGCTACCAAAAACTACAAA


Gene Sequence:
>Vu_21337(+)
ATGGGAAGGCATTCCTGCTGTTACAAGCAGAAACTTAGGAAGGGTCTGTGGTCACCAGAAGAGGATGAAAAACTTCTAAGGCATATCACTAAGCATGGTCATGGTTGTTGGAGCTCGGTTCCTAAGCAAGCAGGTACTTCAACACTCTACCACCTCATCTAACAAAAAATCAAGGGAAGGATTTGTTGTAAATTTTCCTGTCAATGTCGTTTATTGGCAGGTTTGCATAGGTGCGGCAAGAGCTGCAGGCTTCGCTGGATCAATTATCTTAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAGGAGGAAAATCTTATCATTGAACTTCATGCAGTGTTAGGGAACAGGTAAATCCATTCCTTCTTTTCATGACCAAACTCTTACGTTTTCTTCACGTTTAGTCTCTGCCTCTTGGCCAAGCATACGTAGCCATAAAAAAGTAAAGAAAACTCTTCCTTCATGGATATCTTGACATGGACATTCTTTCTTTTCTCAGATGGTCTCAAATAGCAGCACAATTACCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTTAAGAAGAAACTGAGGCTAAGAGGTATAAACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGTTGAGGAGGAGAAAACAACGAGCCAAGAATTATCCAACGAATTGAACCTCTTGAATTCTGAGAGCTTCAAGTCAGACGAAGGGTCCTTTGAGCAGAGAGCATCTTCGATTGCCCCCAAAGCCTATGAGATGGAAGGTTCCTGCAGCTCCAAGATTAACACCAAAAACGACACCAACTTGATAGCCAATTGTTCCAACAAAGACTTGTTCCTAGACAGCTACACCACTAGTTGTCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATGACTGACACTCTCCCAACCAATTCAGACTCCAACCATTGGTTCAGTCCAACTGCAAGACCCATTGATATAAACTCTGAGTTTACTTCCAATGTTATGTCCATTCTTCCACCTACAACAACCTCATTTCTCCCTAGCACTTCTTTTTGCTACAAGCCATCACTTGCAGTCCCCCCAGAAGATATTTCAGCACCTTCGTTCGCTTTGAATGGACCCAATTACTGGGAACCCAGTGCCTCCAACAACAGCAATGGCAGCAACACAAGTGATGGCAGCAGAGAGTTCACAAGTAGCAAGAACAGTGTTCTTTCTTCGTGGGGACTGACAGAAGAGGCCAAGTGGTCTGAGTACCTCCATAACCCAATGCTGATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGGTACCTGATAACACTTTAGGGTCCATAATTTCTGGTTCCAAAGAGCAACACCAGTCACAAACTTCTGCCATCTTTTCCAAGGACATCCAAAAGCTAACAGCAGCGTTTGGACATATATAA