Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21445 LG5 33118666 33119376 PREDICTED: agamous-like MADS-box protein AGL80
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   located in   polar nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein dimerization activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific
SNP Position Effect Amino acid change
C/T 33119131 synonymous_variant p.Lys82Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21445.1
MTRKKVKLAFIVNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRILKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQTQVAAPAITDVAAKIEDKGQGSHSGQGFDINMDLMQKQNWFMNLMNNGGGGNETMPFGDVNHQNGFWPNPFFH*


CDS Sequence:
>Vu_21445.1
ATGACTAGAAAGAAGGTGAAGTTGGCATTCATAGTGAATGACTCAGCTAGGAAGGCAACATTCAAGAAGAGGAAGAAGGGTCTGATGAAGAAGGTCAGTGAACTTAGCACCCTCTGTGGAATTGATGCATGTGCTATAGTTTATAGTCCTTATGATCCTCAACCTGAAGTTTGGCCATCTCCAATGGGGGTTCAAAGGGTGCTTGCCAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTAAACCAAGAGAGTTTTCTGAGGCAGAGAATCCTGAAGGCCAAAGACCAATTGAAGAAACAAAGGAAGGACAATAGGGAAAAAGAGATGACTCAGCTCATGTTTCAGTACCTCAGTGCTGGTAAAATTATGCACAATATAAGCATGGTTGATTTGAATGATCTGGCATGGTTGATTGACCAGAATCTGAAGGACATCAACAGGAGAATTGAGGTGTTGACTAAGAATGCTCAGAGTCAAACCCAAGTTGCAGCACCAGCGATTACTGATGTTGCTGCCAAGATTGAAGACAAGGGACAAGGGAGTCACAGTGGCCAGGGATTTGATATCAACATGGATCTCATGCAGAAGCAGAACTGGTTCATGAACTTGATGAATAATGGTGGTGGTGGGAATGAGACTATGCCTTTTGGAGATGTTAATCACCAAAATGGCTTCTGGCCAAACCCATTTTTCCATTGA


Promoter Sequence:
>Vu_21445::LG5:33119376-33121376(-)
GCTTTGTGTTAGGTGCTTAGGAAAATCCAATCCAAAATTATAAATTTATTTTGTGATTTTTATTCTAACTGGTCACACCCATTATTTATAGTTTGTAATTTATACAATAATTTAATTTGAAGAACATATTTTATATATTTTGTGAAAAAAGGAATATTTATTTTTGAGCTGTCCTCTTATTACAAATCGCCGTGTTTTAAAAACATATAATATTGATTTTATAATACTCAATAGTAAATAAATATACAAAATAATATACATTATTAGAGATACACAATGTTTATTACAAGCTCATTGCAAATTTAGTTACCCTTACTAATAATATAAATCTTATTATATTCCTTAGAGGCTTGTAATATTTCTTTTATAACATTATCATTCATATTTCAATACATGAACATTTTCAAATTTTTATACATTTTTTTAAAATCTTTTATGATATCTCAAATTCAACCATTATGCACCACATGCTGTCAAACCGATATTAGTTTATAAAATGCAGATAGTTACGCTAGTTTATTTTTATTTTTTGTTATTTTCTTTTACATTGGATAACTTCTAAATTTTTTAATTAATTTTGATTATGCTTGAAGATCTCTTATTTGTTCTTTTTTGTTCTTCTTTTGAATGGTTGCACTAAATTATAAAAGTTAAAATTAGTTTATTTTAGCTAATATAATCTGATTTGAAGTTTGGCTAGTCCAAAAAATCTTGGTCCACATCATGAACTAGATTGGATTGTGAACTCATTTATGTACTTTTACTATATTTTTTTACAAATAATAAAATTAATTACGAGTCTTAAAATAAATCAGCATGTTAATATAATCTAATAATGATAATAATTTGATAGGATATGTTGACATTTTCAGTTTACCCGATCATCAAGCCCATCCCTTCTGGTTTACTAGCTCAATAGGTCACAAGCAAATAAGATGATTGATCCACCAACTTTTTTTTTTAATTTCTTAAAATTATCATTAAAATCAAAATAAAAAACTATAATTTAAAATATTACAATTTCATTGCGTTTTATTGTTGACCTGTTCTGTCACACTGAAATTAATATTATATATGTTAGTAATGTCGTTTTGTCTAATTAATACTAATATTAAACTATAATCATTTTTTTGTGTGAATCATATATCTGGGGAATATTTTTGTTAGATTAAATAAATATTTTTATATATAAAACTATATGAAATTATAGCTAAAAATAGATCATATTTACTTACACATAAGTTACTTTATTTAATTACGCATCAACATTTAGTTAAATTTGGTAAACGTATTTTTAGGATATGTATCAACCTCTTCACCCTCTTCACGTACTTTGTAAGTAAGTTTATAATAATAACAATGTAAGACCTTTTTATGATGTTTTATTCACAGATGGATCCTTATTAAATTCTTTTCCCTTATGTATAATTCCATTATTCTCATATACATCTCATAATTTATGAAGATCTGACCCTTTGTCAAAGGGATAGAATAATAGTTATTAATGATAGTTAATGGGATAAAGGTTTTTTCTATAGTAGAGATATCAGAGATATAAACTACAACTGTGGTATCTAAATTACATTGCCTTGTAAAAGGAATATCACATTGAATTTAAGATCATTTGTTTTTTTCAATTATTAATTACATTACTACAGTATTAACTGAGAATATGTCTTCTGAATGCATTTCGATTCTAGCCATTGCATTGCACACTTGCATTGCTTATTATTCAGTTATATTATCTTACTAAGAAATATATTCTGTATCCTCCATTGATGGAAAGACACTTAAACCTAACATCTCCTATTTAGTAAACATATATTTGGTATTGAATGGTTCATGTCAATGCTGCGAAAAAACAGTGGCTCAATACAAAATAAAATTGGTTATCACTACTACAAAGAAATCTATATAAAGAAGAGAATGCTTGAACAAGATAACCACAACAAGAACGTTTCCAAATTTCATATCGTTCTAATTATCTTTTCATCAGCAGC


Gene Sequence:
>Vu_21445(-)
ATGACTAGAAAGAAGGTGAAGTTGGCATTCATAGTGAATGACTCAGCTAGGAAGGCAACATTCAAGAAGAGGAAGAAGGGTCTGATGAAGAAGGTCAGTGAACTTAGCACCCTCTGTGGAATTGATGCATGTGCTATAGTTTATAGTCCTTATGATCCTCAACCTGAAGTTTGGCCATCTCCAATGGGGGTTCAAAGGGTGCTTGCCAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTAAACCAAGAGAGTTTTCTGAGGCAGAGAATCCTGAAGGCCAAAGACCAATTGAAGAAACAAAGGAAGGACAATAGGGAAAAAGAGATGACTCAGCTCATGTTTCAGTACCTCAGTGCTGGTAAAATTATGCACAATATAAGCATGGTTGATTTGAATGATCTGGCATGGTTGATTGACCAGAATCTGAAGGACATCAACAGGAGAATTGAGGTGTTGACTAAGAATGCTCAGAGTCAAACCCAAGTTGCAGCACCAGCGATTACTGATGTTGCTGCCAAGATTGAAGACAAGGGACAAGGGAGTCACAGTGGCCAGGGATTTGATATCAACATGGATCTCATGCAGAAGCAGAACTGGTTCATGAACTTGATGAATAATGGTGGTGGTGGGAATGAGACTATGCCTTTTGGAGATGTTAATCACCAAAATGGCTTCTGGCCAAACCCATTTTTCCATTGA