Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21639 LG5 35035518 35039610 PREDICTED: transcription factor TGA4-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to bacterium, defense response to bacterium, transcription, DNA-templated, transcription, DNA-templated, defense response to bacterium, transcription, DNA-templated, transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
A/C 35035959 synonymous_variant p.Ala333Ala
C/A 35035961 missense_variant p.Ala333Ser
T/C 35035971 synonymous_variant p.Thr329Thr
G/T 35036041 downstream_gene_variant
T/A 35036045 downstream_gene_variant
C/T 35036339 synonymous_variant p.Glu243Glu
G/A 35036347 synonymous_variant p.Leu241Leu
G/C 35036432 downstream_gene_variant
G/A 35036438 downstream_gene_variant
A/G 35036499 downstream_gene_variant
T/G 35036554 missense_variant&splice_region_variant p.Lys236Gln
T/A 35037043 downstream_gene_variant
C/A 35037048 downstream_gene_variant
T/C 35037129 downstream_gene_variant
A/T 35037132 downstream_gene_variant
G/*,A 35037204 downstream_gene_variant
T/A 35037205 downstream_gene_variant
G/A 35037225 downstream_gene_variant
T/A 35037255 downstream_gene_variant
A/T 35037256 downstream_gene_variant
C/A 35037352 missense_variant p.Ala140Ser
A/T 35037410 downstream_gene_variant
C/T 35037614 downstream_gene_variant
C/T 35037667 downstream_gene_variant
A/G 35037672 downstream_gene_variant
C/T 35037685 synonymous_variant p.Lys97Lys
C/T 35037764 downstream_gene_variant
C/T 35037766 downstream_gene_variant
T/C 35037781 downstream_gene_variant
T/G 35037782 downstream_gene_variant
T/C 35037837 downstream_gene_variant
G/A 35037849 downstream_gene_variant
T/C 35037851 downstream_gene_variant
G/A 35037962 downstream_gene_variant
C/G 35037975 downstream_gene_variant
C/T 35038081 downstream_gene_variant
T/C 35038088 downstream_gene_variant
G/A 35038093 downstream_gene_variant
G/T 35038094 downstream_gene_variant
G/T 35038105 downstream_gene_variant
T/G 35038204 splice_region_variant&intron_variant
A/G 35038274 downstream_gene_variant
T/C 35038280 downstream_gene_variant
G/T 35038457 5_prime_UTR_variant
T/C 35038475 5_prime_UTR_variant
C/G 35038624 downstream_gene_variant
C/A 35038644 downstream_gene_variant
T/A 35038670 intron_variant
C/A 35038674 intron_variant
G/T 35038679 intron_variant
A/T 35038807 intron_variant
C/G 35038905 intron_variant
G/A 35038906 intron_variant
T/A 35038909 intron_variant
A/T 35038998 intron_variant
T/A 35039002 intron_variant
T/A 35039006 intron_variant
G/T 35039046 intron_variant
G/T 35039057 intron_variant
C/A 35039261 intron_variant
G/T 35039268 splice_region_variant&intron_variant
G/C 35039347 5_prime_UTR_variant
T/C 35039502 5_prime_UTR_variant
T/C,* 35039560 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21639.1
MNSASPQFVSSRRMSVYDPIHQISMWGEGFKSNGNLSASMPLIDETDMKLDSQSEDASHGILGAPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHLGFAGPVNSGITTFEMEYGHWVNEQNRQITELRTALNAHIGDIELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIELLTEQQQLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTCAMEKLEALVSFVNQADHLRQGTLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA*


CDS Sequence:
>Vu_21639.1
ATGAATTCAGCATCCCCACAGTTCGTTTCCTCGAGAAGGATGAGTGTGTACGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCATCCATGCCTTTAATAGACGAGACAGACATGAAGTTAGATAGTCAGTCAGAGGATGCTTCTCATGGAATACTGGGAGCACCTAATAAGTATGACCAAGAAGCAAACAAACCTACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGAAAGAGCCGTTTGAGGAAGAAGGCTTACGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAACTCGAACGTGCAAGACAGCAGGGAATGTACATTGGTGGTGGGTTGGACTCTAATCATCTGGGTTTTGCTGGACCGGTAAATTCAGGAATTACAACATTCGAGATGGAGTACGGACACTGGGTGAACGAGCAAAATAGGCAAATAACAGAACTGAGAACCGCTTTAAATGCTCATATCGGTGACATAGAGCTCAGGATTCTGGTAGATGGTATGATGAACCACTACGCTGAAATCTTTCGCATGAAATCTGCTGCTGCAAAAGCGGATGTGTTCTATGTCATGTCTGGTATGTGGAAAACAACGGCCGAAAGATTTTTCCTTTGGATAGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGCCCCCTGATTGAGCTTCTCACAGAGCAACAACAGTTGGATATATATAACCTTGGACAATCATGTCAACAAGCAGAAGATGCTCTGTCACAAGGTATGGACAAACTCCGGCAAACTCTTGCTGATAGTGTAGCAGCCGGGCAGTTCATGGAAGGAACGTACATTCCACAGATGACTTGTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGGAACGTTGCAGCAGATGTCTCGAATACTTACAATCCGTCAGGCTGCTCGATGCTTGCTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTCTGGTCTAACAGACCCCGTGAACCTGCTTAG


Promoter Sequence:
>Vu_21639::LG5:35039610-35041610(-)
CCCTTTTGTCTCAATGCAAAACTTTGTGCGCGCTGCATCGCGTACCATAATCCACATTTTAATTAATAATTATATCCTACACGCAACACCCATCATCACTCGCATTCTAACTGGTTTAGCTATCTTTAAACAGTTTTTCACCAAACAAGATCATGTTAAAAAAAATTAAACTATTGCATAACAAAATATTTCTCAGCTTGTGCTCTTTCCATCAAAAAAAAGATGTGGGTCTAATGCTAAATCCTCATGCCCATCTCATCTCTAATATATGCTTACGTCATTTTATGATAATATAAATATCATATCATATTCAACACATATTAAAATTGAAAGATTGGTCGAGAGAGTTTTTCTTTTTCTTTTGTTTTTGTTTTTGATGAATTCGTTATACCACTAAAGTGTTCTTTTTTTTAGTGGTGGTCTGTTTCATTTTAATTATTATAATGCCCTTTTCATTTTTTTTATAAGCTCGTTACATTGCACGCAACGTAACTTGTAAAAAAATTAAATACTGCATAAAAATAATATTTACTTGACCAATGTGTATTAAATGATACATATGAATTTAATATTAGAATGACGATTGACTTGTGATATTTACCGCATTGCATTATTGGAACTTAATTATGATACAGGAGTTTGAAGATATTGATTTTCTTTTGTAAAAATAGTTTTTGTTTTAATATTTATGAAAAAAGACACACACGATAAGAGAATATAGATTTCAAGAATAAAATACTAGTAAATTGGTTTGGACACGTGTCCATTGAGTACGGATTTATTTTTGAAGGCTGAATCATGATTTTAAACATTGCTTTACGCATTGATGTTAAGTTAGAAAAAGAAAATTCTTAAATGCGGATATTCGTATGGGTACTTATCTACCATTCCTAATTAATACGAACAGTTAAATATAACAGTTTAATAATAATAATAACAACATATTTTTGTTGCAAAATCTCAAGTTTAAGAAATACCACTAATTAAGTTAAAATGAATTAATGCGTTGTTCATTTACTAATAATAATGGAGGATGGGAATAGATTAACATTGTTTAACTAAGAATATTTTTGTTGATTGAAAATGAAAATTAATCTTGTAAGATACTAGAATCCATTTAAAATATGTATTTTGATGTGAGAGGAAGAATTAGAACATCTAACAGCATTTTTAAAGGAGAAAATGATCCTAAGATGTGGCAAAATGGTGGTAGATATGGCTAAAGATTAAAGTTAAAGAAATGAAAACGCATTAAGCATTAGGATGAAAGGAGAAATTGTGGCAAGATAGTTTGTTAGTTGCATTCGATGCTCTGATTTATTAGGCAGAAATGCTTTTGGTATATTTATGGTGGAGTCAATGGTTAAAAAAGTAGAGTGGGATGCATCGAATCAGAAGGGTAGAATAGGGCAAAAACATGAAATCACAATTATTATTATTATTCCAATTCTATTTTATTTCGACAATAATCTAAATTAACAGTGCTAATATTCGTATTAATGGGTTAATAGTTTATACGTTAGGGTGTGTGTGTATAATGTAAGACACGGAAAAAAAAATATTGAAATGATTAGGTTTTGTCGAATCTGGTGTGAAGGTGTGACGTCGTGTTCTACTCCAAACACTACACACCACCGTTCGTTAATCATATAAAACTCATAATTTCTTGACTTTATAAAATTGTTGGTGCCCGCATTCTACCCTGGTTATCATTTCCCAAAGGGTGATTATTAATTTCGTGGATGGTGACACCAATAATACCTTAATAACCCAGATAATTAAATACAAAAATACAAAGTACATTAATTAATTATTAAATATTTAGATAGAGTGATGGGTGTTGATAAACATTTTCCGGTGGCCGTGCCGTGGAACAGGAACACGAACAGGAACAGGGTTGAGGTCTACCTGGTGCGCACATTAGCGATAGTGGAAACATGACCATGAGTGTGACACTTGGGTTGTGAAATATATTTGACTCTCTGTAGATCAACACAAGC


Gene Sequence:
>Vu_21639(-)
AAGCAATTGGTAATTAGTAAGAACAACAACAACACACACATAAAAAAAAAAGGCACAAAAAGTCTTCTCTAGAATTTTATTTTGTATTTGTACATACATAAATAATGTAAGGGCATTTAAAAATGGGGGGATATGTTTGCGTGTGTTTTTTTAATATATATAATTAAAATCGAAGGAAGAGGTGTATCTGAAAGCGTCGTCTTCCGAACTAGCAACGCAATGATGGAGTGATAGGAAGGGTCTAGCGTTCTGCGGTTCTTCACCACGCCATGCTGGCATGAAGATTTTGAGCGGGAAAATAATGATAAGACAACGTAAATAACGTTTCTCAAAAAGGTTTGGCTTTTTGGATTTTGTTTTTTCAGTTTTTGTGGATAATTGAGTAACTGTCCAGGGTGGGAATTGGTACAGATCAAAGTTTGTTTGTTGTACTTTTCCAACTCGATGTTATCATGACATCAATGGGTTGAGATACCTGGGGAGATTGATGCCTTTATTTATCTTTGTTTTGAACTTCTATGATTACTGGTACTTTCTTCTCGCGGTTGTTAAACCTTTTGTTGGCTCTGGGAAAAGGGAAAAAAAAAAGGGAAAAAAGGGGACTACGTAGGATTTGGTTTTGCGTTCCTATATTTGCGAAAAATGATGAAGTGGTTTGTTACCTTATTAATGGAAAAATCGTACAATAGATTCTTCTGCATAGGCGCTGTCTGTGGCGGTTGTCGTGCAAACGTGGATGAGGTGGAGGAAGAAACTAAAACACGGTTTAATTAAATGAATTACGCGACTTTTGTGCTCCTCTTTTTTACCTTGTGATGTCTGGTTTTTCTTGAGATTTATGGTTCCGTTTGTTGCCGTGTGTTTTTAGCTAGTAGTTAAGGAATTTTACTCTTCGACTCTCTCATAGTGCTTCTTCTGGTTTAAACAGTGCCAACTGCATAATCTACTCTGCTACCCTTTTGTATCGTTTTCTAATTCCTGCTCGTGCTACGATGTAGGATTAACAGAGTATTAACTGGGTATTAATCTTTGAAGTGACTGTGTTTGGCTTATAATCTTTAATGCATTTTTTTTTTTGTCTTGACTGCAGTTTCCTGTATAGGCATATGCTGAATGCTTATTGTTGACTTGTGGCAGTGGTCGATACTGAGAGCATGAATTCAGCATCCCCACAGTTCGTTTCCTCGAGAAGGATGAGTGTGTACGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCATCCATGCCTTTAATAGACGAGACAGACATGAAGTTAGATAGTCAGGTGCGAGTCTACTACTAAATCTGTGCTTTGTTTCCTTGGCAAATACGAAGGCTTGTTCTGTCAACTAACCAAATTTGTTTGTGCTGTTTGATAACTAGTCAGAGGATGCTTCTCATGGAATACTGGGAGCACCTAATAAGTATGACCAAGAAGCAAACAAACCTACTGATAAGGTAAGAGCGTGCTTTTTTGCCCCTTCTTTCCCCCAAACAAAAGGAAAGAAACAAGGGTTATTTCTTGGTGGTGTTTTGTTACTTTAAACTGTGTCTACTTGGGAACTCTGGAATACTTCCTGCAACAGATTTGTCAGCTCAAATTACCTGCAAATGCAGATGCAGATGATTTTGAGCAATACAATTTCAAATTTCTTTCATTGGGCCATTTGTCTAGGACTAAATGTTTTACATTTTGTGGATGATACGATTAGGGTGGGAGTGAAAAGTTTAATCCTGCCATTTTGAACTTTGAGGAATCTGTATTTGGCTTGGGTCCATACTCTCTTTTATGCCCATATAAAGTGTAAACAAATAGGAGGCTAATTTGATGAAACATGCAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGAAAGAGCCGTTTGAGGAAGAAGGTTTGCATGTTTATGCATTGATGGATTGTGATATTTGGTATTAGAGTTTAAATATACTAATGTTGGTGTGGTTTATGATATTGCCCCACAGGCTTACGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAACTCGAACGTGCAAGACAGCAGGTGTGGGGAAGATGAGTTAATATACTTTTAGTTTCTCTAATGGATCACATTATGTTGATCATCGACTTCCTTCCTTTCCCTTTCTTTTTGATATATTGAGGCTACAAAACTGCAGGGAATGTACATTGGTGGTGGGTTGGACTCTAATCATCTGGGTTTTGCTGGACCGGTAAATTCAGGTTGGTTTGTTATTATGCTACTACAACTATATATTTTCCCTGCAGAATAAATTACGCTGACAAGTTTTTTTATTTTTTAAAAAAATTATACATAAACCTCAAATTAGTCATCATTTTTTATATCACACACATATCTCCTTTTAAAATATTATACTTATTGTATGTTGATATTGTACTGGTAATTTAATGTTTTCATTTTTTTAAATTTTATTCTTTGGTAAAATCAGTCTCTCCAAATGTGCCAAAATCTCTTTCTAAGTGAACATCTAAATACTATAAAATCTTGTTTCAGTGTCCACCATCTCAAATTATGCAGACACAAACTTTGGTAACTTTATGGCATTGCAACTCCTGAATTGTTCAGAAATTTTCGTGTTGCCATGCAAGATTACCATATTTTGTTATGGTTGGTGCGTAATATTGTTCCTAGTTTGCATGAGTATCCTTTCTTCTTGTGTTACAATCTGTTTTCCACTCTGTTCATGTATTCTAAGAATACCATATTTGCAGGAATTACAACATTCGAGATGGAGTACGGACACTGGGTGAACGAGCAAAATAGGCAAATAACAGAACTGAGAACCGCTTTAAATGCTCATATCGGTGACATAGAGCTCAGGATTCTGGTAGATGGTATGATGAACCACTACGCTGAAATCTTTCGCATGAAATCTGCTGCTGCAAAAGCGGATGTGTTCTATGTCATGTCTGGTATGTGGAAAACAACGGCCGAAAGATTTTTCCTTTGGATAGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTGACGGTTCATATTTAATAAATGCAAGATGTATAAAGCTTCATTCCTAGAATGTGTAGTTCTAAATTTCAGTGACTGGTTTTGAGGAGTTTCTCGTTATTATTGGGTTTTAACAACTTCTATCTTCTTGAGAGATAGAATGGGGGAATGGTTGTAAGTATGGTTCTTGCTGACATTTAATTTTAATTGCAGGTTCTTGGCCCCCTGATTGAGCTTCTCACAGAGCAACAACAGTTGGATATATATAACCTTGGACAATCATGTCAACAAGCAGAAGATGCTCTGTCACAAGGTATGGACAAACTCCGGCAAACTCTTGCTGATAGTGTAGCAGCCGGGCAGTTCATGGAAGGAACGTACATTCCACAGATGACTTGTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGTAATGTTTCCGCAGACATTTGTTCTCAGTTTTTTTAAATTTAAAAAATTTTCCTTTTCATTCTAAAGAAATTCTAGTAAAAACGGAAAACAATGTTGTGTGTGAAACAGGCTGACCATCTTCGGCAGGGAACGTTGCAGCAGATGTCTCGAATACTTACAATCCGTCAGGCTGCTCGATGCTTGCTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTCTGGTCTAACAGACCCCGTGAACCTGCTTAGTCTCACAAACAGGTTACAAGAGCCAAAACTTGTAACATGAACGTGATGCGATGATGAACAACGTTGGTCACTTTCTTTGGCCAAGAGCATCAAAACAGTGCATCATGTGAGGGTCCAGGTTGCTCACATTTTTCCTGCAGTTTTGCGTTATGGAGAAGTTGTAAATACGACTGCTCGCTCATTTTATGCATACCAGTCTGTAAATAAATTAATTTTGGACGCATGGTGTATATTGGATTGTTGCAGAATGAAATATTTAGAATATGCCATGAGCCTGTGTGGAAGTTGGTCATGTAAAATTCATATAATGTTACGTTGTTTGCTTTTGAAAATTAATCTACTTTTAGACTC