Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21690 LG5 35514845 35517199 PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, negative regulation of abscisic acid-activated signaling pathway, response to water deprivation, abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, negative regulation of abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, negative regulation of abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, abscisic acid-activated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, response to water deprivation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to water deprivation
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, sequence-specific DNA binding, transcription cis-regulatory region binding, DNA binding, sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, RNA polymerase II-specific
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 35514848 3_prime_UTR_variant
T/C 35514865 3_prime_UTR_variant
A/G 35514889 3_prime_UTR_variant
C/G 35514907 3_prime_UTR_variant
G/A 35515327 synonymous_variant p.Phe263Phe
C/G 35515698 intron_variant
C/T 35515755 intron_variant
T/C 35515881 intron_variant
C/A 35516087 intron_variant
T/A 35516224 missense_variant p.Glu119Val
C/T 35516438 missense_variant p.Glu48Lys
G/A 35516815 5_prime_UTR_variant
G/T 35516970 5_prime_UTR_premature_start_codon_gain_variant
T/A 35517099 5_prime_UTR_variant
A/T 35517124 5_prime_UTR_premature_start_codon_gain_variant
A/C 35517190 5_prime_UTR_variant
A/C 35517192 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21690.2
MKRLSSSDSSSTPLITVCPSTEEHSTRNCQQHVYGREFQSMMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGVSVKEEIMMPDSDDKTTTEQQSKSEPSSESEDQLNYECLNNNKNSACFGGASLFPVDFKDGSSDSDSSAILNEENHCSPITEHLLLSTESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS*

>Vu_21690.3
MMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGVSVKEEIMMPDSDDKTTTEQQSKSEPSSESEDQLNYECLNNNKNSACFGGASLFPVDFKDGSSDSDSSAILNEENHCSPITEHLLLSTESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS*

>Vu_21690.1
MMLEGLDEEGCVEEVGHQSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGVSVKEEIMMPDSDDKTTTEQQSKSEPSSESEDQLNYECLNNNKNSACFGGASLFPVDFKDGSSDSDSSAILNEENHCSPITEHLLLSTESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWS*


CDS Sequence:
>Vu_21690.2
ATGAAGAGACTTAGCAGTTCAGATTCTTCTTCCACTCCCCTGATCACAGTTTGTCCATCAACAGAGGAACACAGTACGAGAAACTGCCAACAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTTGAGGGGCTTGACGAGGAAGGGTGTGTTGAAGAAGTGGGACATCAATCTGAGAAAAAACGGCGACTGAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGCTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTCCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCTTTACGGAAGCAGATAAAGGAACTGAAATCGAGGCTGGAGGAAGAGAACACTGGAAGCGGTGTTTCCGTGAAGGAGGAAATAATGATGCCTGACTCGGACGACAAAACAACGACGGAACAACAAAGTAAGAGCGAGCCTAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTAAACAACAACAAGAACAGCGCTTGTTTCGGAGGCGCTTCGCTCTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTCTTGCTGTCAACGGAATCTTCCTCGATGAACTGTTTGCAGTTCCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGATGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCGACGTTGCAGTGGTGGAGCTGA

>Vu_21690.3
ATGATGCTTGAGGGGCTTGACGAGGAAGGGTGTGTTGAAGAAGTGGGACATCAATCTGAGAAAAAACGGCGACTGAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGCTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTCCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCTTTACGGAAGCAGATAAAGGAACTGAAATCGAGGCTGGAGGAAGAGAACACTGGAAGCGGTGTTTCCGTGAAGGAGGAAATAATGATGCCTGACTCGGACGACAAAACAACGACGGAACAACAAAGTAAGAGCGAGCCTAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTAAACAACAACAAGAACAGCGCTTGTTTCGGAGGCGCTTCGCTCTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTCTTGCTGTCAACGGAATCTTCCTCGATGAACTGTTTGCAGTTCCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGATGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCGACGTTGCAGTGGTGGAGCTGA

>Vu_21690.1
ATGATGCTTGAGGGGCTTGACGAGGAAGGGTGTGTTGAAGAAGTGGGACATCAATCTGAGAAAAAACGGCGACTGAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGCTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTCCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCTTTACGGAAGCAGATAAAGGAACTGAAATCGAGGCTGGAGGAAGAGAACACTGGAAGCGGTGTTTCCGTGAAGGAGGAAATAATGATGCCTGACTCGGACGACAAAACAACGACGGAACAACAAAGTAAGAGCGAGCCTAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTAAACAACAACAAGAACAGCGCTTGTTTCGGAGGCGCTTCGCTCTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTCTTGCTGTCAACGGAATCTTCCTCGATGAACTGTTTGCAGTTCCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGATGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCGACGTTGCAGTGGTGGAGCTGA


Promoter Sequence:
>Vu_21690::LG5:35517199-35519199(-)
TAGGATAAGATTTATATTTGTTTATATATCATAAATAATTTTGTTTGCTTTATTTATAATAGGCTGGGATATTCAAATCATTTCTCACATCAATATATATAATTTTAAACTTAATTGTAAATATTAATGAATAGTAAGATAATTGTCCTATAATTGAAATATGATAGATACATTTTAGATGATTATGATATCATATTGAATTAATATGATATTTATCTTTAAAATAATGATTATGTAATTCTGATATCATTTTAAAAATAAATTTTAAAAATAACTAAATATATAAAATTTACTTGTAAATATAAATTTTGTAAAATTTACTTATGTAGCGTAAATTTATCTTATTTCGAGTTAATATAGAATGTTTAAGAAAAATTATAATCTAACTTACATGATGAAATGATAATTTTTTTTATAAACTGAAATGAAAAGAACAAATTAAATCACAAAAATAGACATTAATATATGCTAAAAGTTATCAATTTTTTTCCAACAATGGAAACTTCTTCCGTGGCTTAAAAGATATGACATGAATAACTATTAAACCTAAAGCTAAATAGTGTGCAATGAGGATGAGTCTCTATATGATGTTAATTATTTAAAGCAGCAATGCCACAAATTCGAAAATAAACAGTTTGATGTTCAGTATAAGATATATGTTCAGATATACATGAGTGGTTCCTAGTTCTTGTAATATGAACATCAGTAGTTGAACCATCAAATTATATATTTCAAATATTGAAAACACCTAAAACTATATAGATTATAGTATCTTTTGCATCCCAAACCCATGTATTGGTCCCAGATAATTCTCTTTTATCTGCCTAAGGTAACTCCTTTATGCATATAGTAGACTTCAAATCCAGGCACTAAAAGATTGTTCATTACTAGATTCAGATTAAACCACTTTTTAATACAACAAACTCATGTAAAATATTTTAAATTGCAACACATTAATTAATTTGACAATGATAATAATCTTATATATATATATATATATAAAATATTTTATGGCTAATGAATAAATCATTATCTATTCTAAATCAAACTACTTTTTATCAAAACAAATGAGGAAGCATTAAAGTAACTAGGAGTTACAAAAAATAAATGTTCTTACAATAATGCCCTAGTTATATAAGTAAGATTAATTCTTTACATAATCTTTCAAAGCAAGACTTTTTTTATTTCTAATTTAAAATATGGAAATTTATTTTATATAGTTTTTTTTAGGCACAAACTTGAACATGACATATTTTTGGTTTTGTAAGAAGTTAAATATATTAATTAGTATTAAAAAACTATTAGTTACCTTAGAATTAAAAAAAAATATTATGTTTTGGGATAAAATTAATATAAATATATAACTAAATAATAATTTTTACTTTAAAATGAAAATTAACATTTAAATGAAATAGAATAACACGATGTAAGGTTCTTTTAATTCATAAGGAGTAGATTTTGAGTGTGATTTAGTTTATAGTAATTCATGCATACTTTAGTTCATTGAATTGGAATTTTGTTACATTTGAAATATACACATTTCAGACTAGATTTTTTAGGGTTTCAAATCTGTTATCAACCAGACAGATTTCTGATATATGTATTTTTAGCTAAATACAAAATATTGTTTTGATAATTTTTTAATAAGTAAATATCACCCTCAGAATTATTTAAAAGTGTCCGTTGCAGGAGCGTGATACGCTGACCAACCCAAATCTTGAGTCAGCTAAACCGAGGGAGCCGAGCCGTATACACAACTAATTAATTATTAATCAATTGATTGCTGTTGTTAGGATCTAAGCCGAAGAAATATCACTGTCACTAAACGGTCGAAAGAAACCGGAAGTGCAACGGGCTACAACCGGTGATGAAAAGTTGCATTTGGATTGAATTTGGGTTCATTTTCATTTGAAAGCTAACCGCAGTAGCAATCCACCTAACCCCAGTCAGATTCTATCTCCGGTTGGGTTTATATAAAGCGAGTGCAATTAGGAAACTCT


Gene Sequence:
>Vu_21690(-)
ACCGGGTTGTGAAAATACTTCACCATTTTCTAGTCTCATGCTATATTCATCATTCTCTAGTTTGTTTCTTTGTTTTTGTTCATAGTTGATGAAGGAACTTATTCTTTCTCTCACTTTTTATATTTAACCATGCTAAATGATACAGTGGAGAAGAATTTTATAGCATGTTTGCGTGTGTTTTTGTTTTGTTTTGAGAAAAAATTGGCTTGTCTGTGTGGTTTTGCTTTTCCTGTATGAAAATTTTGATGGGTAAAGAGGTTGAGGAGGTGGTAAGAAAGCAAGGAAAAAAGGGTGTTGGTGGAGATAAGTGGTACTTGTATAGCTGCTTACAAGATTGTAAATATAGGTGCTGTTTAATACAAGGTAGTTCTTTTTCCATGGTTCCTTTTGAATGAAAATTAAACCTTGTCTTCTCAGCTTTGTTTTGAGATCTTAAAGACATTGACCACCAACAATAAAGTGGATCAAAACACTTTCTTCTTTTAATAAGATCCCATCTTTCGTTCCCATGAAGAGACTTAGCAGTTCAGATTCTTCTTCCACTCCCCTGATCACAGTTTGTCCATCAACAGGTGATAATAATTAGCTCACAGATCCAAGATCCTTGTTTTAATCGTGTCGGTTTTGTATAGATATACTAGTACTAATCATTATTATATTTATCTGTGATTTGTAATGATTTAGAGGAACACAGTACGAGAAACTGCCAACAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTTGAGGGGCTTGACGAGGAAGGGTGTGTTGAAGAAGTGGGACATCAATCTGAGAAAAAACGGCGACTGAGTGTAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAAGAACTTGGGCTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTCCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGACAACGAAGCTTTACGGAAGCAGGTACAATAATAATACTTTATTTTGGATTTAACTAAAACAACTCTGGGTAATTACTTTTTTAACGATAAAACAAAAGTGCATGTTAAATTTTACTTTTTTTAACCATCTTTGCTCTCAGAATAAAAGCAAGTTGACCCATTTCGTCAAGATTTACTCACAAAGCTCCTGCTCCAATTTTCAATTTCTGTTAATTTTGTTATAAATCCTCACTGGTAATTAATATTCGTTGACAAGAACGATAGTTTCTTTTAAGCATATACTTTTTCATCAGAAGGTTGGAAACGAAAGTCAATTTCTTTCCTTAAGTAAAAATTAATCTCAGTCAGATTATTTTTAAATCTGGTTTTAAAAGTTGTCTTAATTTTTTCTTGAACAAAGACCTATCTAATTTTCCTAGAATTTACTTGCGAATGTTTTTGTTTGAGTGTTGTAGAGTGTGTTTTGAAATTGGATGGTGTTTGCAGATAAAGGAACTGAAATCGAGGCTGGAGGAAGAGAACACTGGAAGCGGTGTTTCCGTGAAGGAGGAAATAATGATGCCTGACTCGGACGACAAAACAACGACGGAACAACAAAGTAAGAGCGAGCCTAGTTCGGAATCCGAGGATCAGTTGAACTACGAGTGTTTAAACAACAACAAGAACAGCGCTTGTTTCGGAGGCGCTTCGCTCTTCCCAGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTCTTGCTGTCAACGGAATCTTCCTCGATGAACTGTTTGCAGTTCCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGATGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCGACGTTGCAGTGGTGGAGCTGAGGAAAAGAAAAGAAAGGAGAGAATGAAAAATTTTGTTTGATATTGTACATTTGGTTGAAGTAGTAAAAGGGTTGGGTGGTTGAAGGGTAGAAAATGGAATGGCGTCGTGTGAAGTTGAGAAAGAGAAGCGAGAATGGCTGCTGCATGGAGTGGGGTGGGAGGTAACATGAATAATTCAATCCCAGACAAAACCATGCTGTAAAAAGCTTTCAATTCAAGTATACAATAACGGTGCAGAACCTTTTTACCAAAGACAAAACCGAAACAAGAACTACTACACAAGTGTAGATTATGTTTATGAATTTTCAATTTTGTGTTCCAAAATGTCCCAAGATTAAAATACATTCCGGGTATTGTTAGTT