Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21763 LG5 36060879 36063962 PREDICTED: squamosa promoter-binding-like protein 12
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of auxin metabolic process, regulation of transcription, DNA-templated, anther development, regulation of timing of transition from vegetative to reproductive phase, regulation of transcription, DNA-templated, anther development, anther development, regulation of transcription, DNA-templated, anther development, negative regulation of auxin metabolic process, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
A/T 36061010 3_prime_UTR_variant
C/T 36061011 3_prime_UTR_variant
A/G 36061440 downstream_gene_variant
G/T 36061615 synonymous_variant p.Leu288Leu
T/A 36061728 downstream_gene_variant
C/A 36062795 missense_variant p.Gln211His
T/C 36062904 missense_variant p.Asp175Gly
C/G 36063508 5_prime_UTR_variant
A/G 36063652 5_prime_UTR_variant
A/C 36063744 5_prime_UTR_premature_start_codon_gain_variant
C/A 36063804 5_prime_UTR_premature_start_codon_gain_variant
A/C 36063906 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21763.2
MEWNAKSLGQWDWEHLFFFNTKATENPRLPTTDCSNEADREINVGVFYPSGGSACSGSELVHASSPRSSKSASNNSLSNEDSKASVLTLEGSQDDSTGKKELCPVETSQSAVPSPVSGEPLLTLKLGKRLYFEDVCAGSDSKKASSFEVPISSGKKYKTSNQNLQHPSCQVEGCDLDLSSAKDYHRKHRVCEGHSKSPKVLVAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPQPDSVQLNPSALSSSPYDGRQMMSPFAFSRSATNMGWQNLHSNKLPQTKDFLPKPAKAFDKIPSIVSMFSDDNSGLLTSRSIAAKTIVPGLEDPNSISSCDPNGAQDVNRALSLLSSNSWGPYETKFLSLERSSRTQSMTHHQQRLPLASSSEYWHTDHQQQQPSPSTMSMCISFSDCDTNNRFQDFQLLSAPYDSPFPCNHLD*

>Vu_21763.1
MEWNAKSLGQWDWEHLFFFNTKATENPRLPTTDCSNEADREINVGVFYPSGGSACSGSELVHASSPRSSKSASNNSLSNEDSKASVLTLEGSQDDSTGKKELCPVETSQSAVPSPVSGEPLLTLKLGKRLYFEDVCAGSDSKKASSFEVPISSGKKYKTSNQNLQHPSCQVEGCDLDLSSAKDYHRKHRVCEGHSKSPKVLVAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPQPDSVQLNPSALSSSPYDGRQMMSPFAFSRSATNMGWQNLHSNKLPQTKDFLPKPAKAFDKIPSIVSMFSDDNSGLLTSRSIAAKTIVPGLEDPNSISSCDPNGAQDVNRALSLLSSNSWGPYETKFLSLERSSRTQSMTHHQQRLPLASSSEYWHTDHQQQQPSPSTMSMCISFSDCDTNNRFQDFQLLSAPYDSPFPCNHLD*


CDS Sequence:
>Vu_21763.2
ATGGAGTGGAATGCAAAATCTCTCGGACAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACAGAAAATCCGAGGTTACCAACAACTGATTGTAGCAACGAAGCAGATCGAGAAATCAATGTTGGGGTGTTTTATCCATCAGGTGGGAGTGCATGTTCTGGGTCTGAACTAGTACATGCTTCTTCACCAAGGAGCTCAAAATCAGCTTCCAATAATTCACTGTCAAATGAGGATAGCAAGGCATCGGTGTTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAACTGTGCCCAGTTGAAACTTCTCAATCAGCAGTTCCTTCTCCAGTCTCTGGTGAACCTTTGCTCACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATGCGCAGGAAGTGATTCCAAGAAAGCATCTTCCTTTGAGGTTCCAATTTCTTCAGGAAAGAAATATAAAACCAGTAATCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGCTGTGACCTTGACCTTTCATCTGCTAAAGATTACCATCGCAAACACAGAGTGTGTGAAGGTCATTCCAAATCCCCTAAGGTGCTTGTAGCTGGTTTGGAGCGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTCTCAGATCATAATGCAAGGCGTCGAAAACCACAGCCTGACTCAGTCCAATTAAATCCATCAGCGTTGTCTTCGTCGCCTTATGATGGGAGGCAAATGATGAGTCCATTTGCATTTTCAAGAAGTGCTACAAACATGGGCTGGCAGAATTTGCATAGCAACAAGCTCCCCCAGACAAAAGATTTTCTTCCGAAGCCTGCAAAAGCCTTTGATAAGATACCCAGTATTGTATCCATGTTTTCTGATGATAACAGTGGTCTTCTAACATCCAGAAGTATAGCAGCGAAGACTATTGTTCCAGGTTTAGAAGATCCGAATTCCATTAGTTCGTGTGATCCAAATGGTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTCCATATGAGACTAAGTTCCTATCACTGGAACGCTCCTCTAGAACACAATCGATGACGCACCACCAGCAGCGCTTACCGCTTGCTTCCTCTTCGGAATATTGGCACACTGATCATCAACAACAACAACCTTCCCCTTCCACCATGAGCATGTGCATCTCATTCTCAGACTGTGATACCAACAATCGCTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGACTCGCCTTTTCCATGCAACCATCTGGATTGA

>Vu_21763.1
ATGGAGTGGAATGCAAAATCTCTCGGACAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACAGAAAATCCGAGGTTACCAACAACTGATTGTAGCAACGAAGCAGATCGAGAAATCAATGTTGGGGTGTTTTATCCATCAGGTGGGAGTGCATGTTCTGGGTCTGAACTAGTACATGCTTCTTCACCAAGGAGCTCAAAATCAGCTTCCAATAATTCACTGTCAAATGAGGATAGCAAGGCATCGGTGTTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAACTGTGCCCAGTTGAAACTTCTCAATCAGCAGTTCCTTCTCCAGTCTCTGGTGAACCTTTGCTCACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATGCGCAGGAAGTGATTCCAAGAAAGCATCTTCCTTTGAGGTTCCAATTTCTTCAGGAAAGAAATATAAAACCAGTAATCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGCTGTGACCTTGACCTTTCATCTGCTAAAGATTACCATCGCAAACACAGAGTGTGTGAAGGTCATTCCAAATCCCCTAAGGTGCTTGTAGCTGGTTTGGAGCGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTCTCAGATCATAATGCAAGGCGTCGAAAACCACAGCCTGACTCAGTCCAATTAAATCCATCAGCGTTGTCTTCGTCGCCTTATGATGGGAGGCAAATGATGAGTCCATTTGCATTTTCAAGAAGTGCTACAAACATGGGCTGGCAGAATTTGCATAGCAACAAGCTCCCCCAGACAAAAGATTTTCTTCCGAAGCCTGCAAAAGCCTTTGATAAGATACCCAGTATTGTATCCATGTTTTCTGATGATAACAGTGGTCTTCTAACATCCAGAAGTATAGCAGCGAAGACTATTGTTCCAGGTTTAGAAGATCCGAATTCCATTAGTTCGTGTGATCCAAATGGTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTCCATATGAGACTAAGTTCCTATCACTGGAACGCTCCTCTAGAACACAATCGATGACGCACCACCAGCAGCGCTTACCGCTTGCTTCCTCTTCGGAATATTGGCACACTGATCATCAACAACAACAACCTTCCCCTTCCACCATGAGCATGTGCATCTCATTCTCAGACTGTGATACCAACAATCGCTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGACTCGCCTTTTCCATGCAACCATCTGGATTGA


Promoter Sequence:
>Vu_21763::LG5:36063962-36065962(-)
GCAAAAAGAACACACACTGTGGTTGTTGTGTTTTGTGAGATGTGTTGTACGAAGAAGAGTACATGCTCAGGTTCAGCTCTTTGTGTTTATGTGGCTATTAACGGTAATCAATGCTAATAGAATGCTTAGACTCTGTTTATAATCAAAATCCAAAGGCTGGATAATTTCAAATTTCTCACATCTCTTGATTTATTTTATTGGTTTTTCAATTTCATTAACCACACCAATTTCTCTCTTATTGTGTTTAGTTTAGAGGTGAGTCTCCTAAATTTGATCTGCAAAACCAAAACGGCACAAGAGTCAGAAAAGGAAATAAAGACCACTGGTTTTGAGTTTGTTATCTGCTGCTTTTCCTGATTTAGCTTACAAACACACACCTCGAGCTCTGTGTTGAAAGGTAAGGAAACCCTTTTGGTTGTTCACTTATTCATTCCATGCCCATTTCTGGTTCATCTTCTTCTGAGTAGAGGAAGAACCACCGATCAAGTGGGTGTATCAGTGTTCATTGCAGTTTTTCCCATTTCCACTCTTGTGGTTTAAAGATGAGAACTTGGAACAAAAGTGATACAAACATGGAGGTTTTCTTTTTATGGTATTTTTTTAGTGAGGGGTATTAATTAGCGGTGTTAATGTTAGGGTGAGGTTTATGAGTGCTGCTGCTGTTCCTGTTGTGCTGTTATTGCTTTTTACTGTGATTTCCTTTTGTGGTAGAGTCAGATTGCAACATCCTTTTTCTGAAAGCTTTCACAATGTGAGGCTGGACTTTTGGCTTAGCCCATGAAAAAAGATGCTTTTTTTTGGGGGGTTTCCCGTTTCTTCATCTCTCTTACTCTTTACACTTTTGTGGGTTTATCATTTTCTTGGGAAAGTGGGATTGTTGAAAGCTTGAGATAGATGCCTCTGTTTTTTTCTTAATGAAATTGCTCATGCAAAAAACAAGAAAAAGAAGAAAAAACTTGTGCTTTTTTAGGGGAAATGGGGACCGAAGCTTTTTAATGTACTAGCTAAGTCCCAAGAAAAGAGACCCCTCCTATATAACCTAATGAATTGACATTGGCTCCACAAGGGCTTAGACTTCAGCACCAAAGCCAGCATGTATAATGTTTAACAGTTACATTGAAAATTCAGAATAACATTTTTTGTTCTTCATTTTCCTCAGATTTTTTGAGCTAAGGGAGAAAAAAAAAATTCTTTTTATGGGGTTTATATCGATTGGTTTATGATACTTACGATTGGATAAAGCTTAGCTGCGGTAACATATGTTTTTGGGGATTAAAAGTGGAGTTTCTTGCATTTATGAGTTGGAGGCAAGGTTGTTGGCCTTAATTTTGTGTTAACTAAAACAAGGGCCTAAACTGTGATGTGTTGGCCAGAGTGTTGGATGTTCTGATAAGTCAAGAAGTCATGATTTGTTGGGTTGTTGCTGTTGTGGGGTCTCATTCAATGACCGACTCCTGACATTGCTGTGATAAATGTGAATTATTGGAATCTGAAGGTTTCCCATGTTGAAAGGGAAGTTTTGGTGGTAAGTACACACTTGTAGGAAGAGTTAAAGAGTTAAACATATCACATCACTAGGGGCAATCCATTGCCTTGCATATCACATAAATAGGGATTGTTACCGTTTTTTGCTATTGCCATGAATGAATAAATCATGAAATACCCTTCATAATGTTTACAATGGAGGTTGATTTCTGGAGGTAAAAATAATGCAGTGCCACAAATTGACTGCTGGGAAGTTAGTATACACTTTAAATTTAAAAGGGAAATACATAAATGACTCACCTTTATTATTATTTTTTTTTTTGACGGTGGGGACTGGTTGATATCAGCCTGAGAAGTCTTACAACACTAAAATACAGCCACTCATCTGTCTGTAAAGTTATGGACGGGATTTGCAGAACACTGTGGAGTCCACGGATTTGTTTGATTTGTGTAATTAGGTTCTTTCTTTTGGTTATTTTGAATAAGATAATTCCCTCAGGAGCATCTCAGGTTAC


Gene Sequence:
>Vu_21763(-)
GAATTCGCCTTTGGTAAAATGTATGGTTAAACTAATTTACACTGGCAATGTTATACTTACTTACCATTACCACTTGCTATTTGCTAAGTACCTTTTTATTGCTGCCAAGATATTTTCTATTCTTGTTTAAATCTCTGGTTTGCTTCTGCATCTGGTCTGGCTGGAAATCCATCTGACATAGGGCTAGAACAAGTGATTTTAATTTTAATGTTGTCTTTTAAAGATTGATCGCCATGTTTACCCTTAAGAATTAGCTGTTCTTAGGTTCTATAATTATTGGTCGCTTCACAATTTTTGTATTATTAATAAGTGTTTGTTGATCATGCGTCCACCACATTTATTCAGGTATTCGCGGTGCCTTTTGCTTCTGCCAAACACTATTCCAGTTTCTGTTCTTTCTTGAACCACTTTAATCTCTTTGATAAGATCTTGTATGATTTTTAAAGAAACTAAAGCAGTTAACCCTTATGTTTGATATGAATTGTAGTTTGCAGATCACAGTGAGGATTTGCATATGAATTTCTAAGGACTTGTGATGGAGTGGAATGCAAAATCTCTCGGACAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACAGAAAATCCGAGGTTACCAACAACTGATTGTAGCAACGAAGCAGATCGAGAAATCAATGTTGGGGTGTTTTATCCATCAGGTGGGAGTGCATGTTCTGGGTCTGAACTAGTACATGCTTCTTCACCAAGGAGCTCAAAATCAGCTTCCAATAATTCACTGTCAAATGAGGATAGCAAGGCATCGGTGTTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAACTGTGCCCAGTTGAAACTTCTCAATCAGCAGTTCCTTCTCCAGTCTCTGGTGAACCTTTGCTCACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATGCGCAGGAAGTGATTCCAAGAAAGCATCTTCCTTTGAGGTTCCAATTTCTTCAGGAAAGAAATATAAAACCAGTAATCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGCTGTGACCTTGACCTTTCATCTGCTAAAGATTACCATCGCAAACACAGAGTGTGTGAAGGTCATTCCAAATCCCCTAAGGTGCTTGTAGCTGGTTTGGAGCGCCGATTTTGCCAGCAATGTAGCAGGTAAATCTCAATGAAGTTCTGATTGTTCTGATGAAAATGACATCGAATAAAAATAACATTTTCAAGCACATATCAGTTAAAATAAAGATTTTCCTGTCTTTCTCGGTCATATCAGATAAATTGGTTTAAGCTTTTTCCCTTGAATTATCTTGTTGAAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTCTCAGATCATAATGCAAGGCGTCGAAAACCACAGCCTGACTCAGTCCAATTAAATCCATCAGCGTTGTCTTCGTCGCCTTATGGTATAACAAAAACGTTCCTTTCTCTTGGAAAATCCACTGTTTTTGTCTTGCTCCTTGGTCTTGTTTTGCAGTTTATTATTTTGGGATGCATAGTAGAACATATCATGAAATGTTTCTGGGAGAATTCTGAGAATGAAACTTGTGGTAAAAATATGAACAAATGGGGGAACAAAATTTGGTGAATCTGTGCAAAATCTGACCCATATTTCCTTTATCGTAACGATGTTATCAGAAATTTCTTTTTCAGCGATTTACAAATTCCCATTTTTGTATGATCTCAACTGATTCCAGCAAGCGACAGTTGCATGTTTTTTCCTCTAGTGTTTCTGTTATGTACTTAGTTTTTGCGATTTATTTCAACTTCTGCTTGGAAACCTGTGAGCAGTAAACAAAGAGAATCCATTTTAAAAATCCTTTGCGTTTATAAAAAAGTAATCTAAATAGGACCATAGTAAAAAAAATGATCAACTATCACTTGGTAAAAGGCATAAACACAGTACGGTGGCCAAGTGATAGGAAACCAGACAGCGCACACTTAATAAAAGCAAAGCATGTGGTAGGTAAGCAAGAAACACCGTTACTTTGGTTCCTTTTATAATTGAGTGGTGTCACCTCAAGAAGCAACTTTAAATTCGTAATGTCAAAACACAAACTAACAAATGAACAGTGAATGTTACAGCTTAGCTTGTAGTTTATTGGAATTCATTTATCCATTATTGTTACTGAGAAAACCTCTGATATTGATTTCGTGAATTGACAAAAAAGTATGAAATGCTTCACTTACTTTGCAGATGGGAGGCAAATGATGAGTCCATTTGCATTTTCAAGAAGTGCTACAAACATGGGCTGGCAGAATTTGCATAGCAACAAGCTCCCCCAGACAAAAGATTTTCTTCCGAAGCCTGCAAAAGCCTTTGATAAGATACCCAGTATTGTATCCATGTTTTCTGATGATAACAGTGGTCTTCTAACATCCAGAAGTATAGCAGCGAAGACTATTGTTCCAGGTTATTGTTGAGCTCTTAATAATTCAACCTTCTGATAGAATTGATAGAATTAATAAAACGGTTGTTATTGCAGGTTTAGAAGATCCGAATTCCATTAGTTCGTGTGATCCAAATGGTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTCCATATGAGACTAAGTTCCTATCACTGGAACGCTCCTCTAGAACACAATCGATGACGCACCACCAGCAGCGCTTACCGCTTGCTTCCTCTTCGGAATATTGGCACACTGATCATCAACAACAACAACCTTCCCCTTCCACCATGAGCATGTGCATCTCATTCTCAGACTGTGATACCAACAATCGCTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGACTCGCCTTTTCCATGCAACCATCTGGATTGATCAACAACAACACTATTAATGCAATGTTCATTTGTCTGGATTGCTATGCTGTGCTGTCTTTCCTTAATTTGTTTCCTTTTTTAAATGGAGATTAATTGAACCAACTCATTGTTCCATTTTCTGAATTTTGTCCAAAACTCTCGAGACATTTAATATTGTACCAGACTGCGTTCGTTTATTTTG