Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21790 LG5 36229041 36231307 PREDICTED: uncharacterized protein LOC108318993
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   chloroplast, mitochondrion
Molecular Function   enables   DNA-binding transcription factor activity, ribonuclease activity, ribonuclease activity
SNP Position Effect Amino acid change
A/T 36229217 missense_variant p.Ser57Thr
G/A 36229302 synonymous_variant p.Ser28Ser
A/T 36229325 stop_lost p.Ter62Leuext*?
C/T 36229351 missense_variant p.Cys12Tyr
T/C 36229370 missense_variant p.Thr6Ala
C/T 36229457 upstream_gene_variant
T/G 36229459 upstream_gene_variant
A/T 36229498 upstream_gene_variant
G/T 36229502 upstream_gene_variant
C/T 36229535 upstream_gene_variant
A/G 36229556 upstream_gene_variant
T/G 36229564 upstream_gene_variant
A/G 36229570 upstream_gene_variant
G/C 36229611 upstream_gene_variant
G/A 36229622 upstream_gene_variant
G/A 36229682 synonymous_variant p.Leu88Leu
A/T 36229703 synonymous_variant p.Pro95Pro
G/A 36229713 missense_variant p.Ala99Thr
C/A 36229723 stop_gained p.Ser102*
G/A 36229767 missense_variant p.Ala117Thr
T/C 36229776 missense_variant p.Cys120Arg
G/A 36229777 missense_variant p.Cys120Tyr
C/T 36229815 missense_variant p.Pro133Ser
C/T 36229818 missense_variant p.His134Tyr
A/C 36229838 missense_variant p.Glu140Asp
C/T 36229849 missense_variant p.Ser144Leu
A/G 36229861 missense_variant p.Asp148Gly
C/T 36229871 synonymous_variant p.Ser151Ser
C/G 36229873 missense_variant p.Ala152Gly
A/C 36229890 missense_variant p.Asn158His
A/T 36229891 missense_variant p.Asn158Ile
G/A 36229944 missense_variant p.Ala176Thr
C/A 36229956 missense_variant p.Pro180Thr
C/T 36229980 missense_variant p.Pro188Ser
G/A 36230025 missense_variant p.Val203Ile
T/C 36230026 missense_variant p.Val203Ala
G/A 36230028 missense_variant p.Val204Ile
C/T 36230105 upstream_gene_variant
A/G 36230107 upstream_gene_variant
T/C 36230137 missense_variant p.Ile212Thr
C/G 36230158 stop_gained p.Ser219*
G/A 36230184 missense_variant p.Ala228Thr
A/T 36230192 synonymous_variant p.Ser230Ser
C/T 36230221 missense_variant p.Thr240Met
G/A 36230252 synonymous_variant p.Gln250Gln
G/T 36230258 synonymous_variant p.Gly252Gly
G/A 36230259 missense_variant p.Val253Ile
C/T 36230267 synonymous_variant p.Ile255Ile
C/T 36230284 missense_variant p.Thr261Met
G/A 36230305 missense_variant p.Gly268Asp
T/A 36230312 synonymous_variant p.Ser270Ser
T/A 36230353 stop_gained p.Leu284*
G/T,* 36230420 missense_variant p.Met306Ile
G/C 36230740 missense_variant p.Gly413Ala
C/T 36230947 missense_variant p.Ser482Leu
T/C 36231125 synonymous_variant p.Asn541Asn
T/C 36231282 missense_variant p.Tyr594His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21790.1
MFKEPDSSPKMVFGPISILGEYVDRVGILPLKLYKGVANLSGEGWECGIGFWEDAALAPSAIGIQLQQQHTLILTAFLRPGEDPTRPPLVSPAPVPGDYAVPSFSPSSSSNVSTQFPASKCAQNLNLGNVYHSPHLIEFEESPHSRHVDSFSASISPSNCSTKCPNHALPHCTVTFAALSPFDPFLPPPSFYFSCSTGWVLRFVVLKMVYLTYRRTDNPFKVSRFRSICFFTLEATCWHIYGGLRYYHSGSEWGKNQKLNPNEKPNRVGLFWDLDNKPPNAIPPFDVANKLRIAASSFGIVRYMVAYANSHTFSHVPQSVREKRKERELLYRLENKGVIKPNEPYRCRVCGRKFHTNDKLVNHFKQLHEREHGKRINQIESARGNRRVKLVAKYSMKMEKYKKAASAILTPKVGYGLADELKRAGFWVQTVLDKPQAADRALQSHIVDVMDHRRVECVVLVSDDSDFVDVIKEARLRCLKTVVVGDIDDGVLKRTADTAFSWEEILMGKAKKQAASVVKNWKDRDILKRLEWTYNPDADKNKLDVDVDDIVAETSEDDNIEDTSDEVDDVYKDDRGSWWELDSDNDVSEGQSGKLSDLSVHK*


CDS Sequence:
>Vu_21790.1
ATGTTTAAGGAACCTGACAGCAGCCCAAAAATGGTCTTTGGACCAATCTCCATCTTGGGCGAGTATGTTGATAGGGTCGGAATCCTCCCTCTCAAGCTTTACAAAGGCGTGGCAAATTTGAGTGGTGAGGGATGGGAATGTGGCATAGGGTTTTGGGAAGACGCTGCTCTTGCTCCTTCTGCAATAGGGATTCAACTTCAACAACAGCACACACTGATTCTGACTGCCTTTCTGCGGCCGGGAGAAGACCCCACAAGGCCTCCACTGGTGTCGCCGGCGCCGGTGCCAGGGGATTACGCAGTTCCGTCATTTTCTCCCTCCTCATCTTCCAACGTTTCCACACAGTTTCCTGCTAGTAAATGTGCACAAAACTTAAATTTAGGTAATGTTTATCACAGTCCACATTTGATTGAATTTGAAGAATCTCCACATTCGCGCCACGTTGATTCTTTTTCCGCTTCTATTTCGCCGAGTAACTGTTCGACGAAATGTCCCAACCATGCACTTCCTCACTGCACCGTTACCTTCGCTGCTCTCTCCCCTTTTGACCCCTTCCTTCCCCCACCCTCATTCTACTTCTCCTGCTCGACCGGTTGGGTGCTCCGATTCGTAGTTCTGAAAATGGTCTATTTGACTTATAGAAGAACAGATAACCCTTTCAAAGTCTCCAGATTTCGTAGCATTTGCTTTTTCACACTAGAAGCTACATGCTGGCATATATACGGTGGCTTGAGATATTATCATTCTGGATCAGAATGGGGTAAAAATCAGAAATTGAATCCAAACGAAAAGCCAAACAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAATGCAATCCCACCTTTTGATGTTGCCAATAAGCTGAGAATAGCTGCATCTTCCTTTGGGATTGTTCGTTACATGGTGGCTTATGCAAATAGCCACACTTTTAGTCATGTTCCTCAATCTGTACGGGAGAAAAGGAAAGAGAGGGAACTGTTGTATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTCATACTAATGACAAGCTTGTCAACCATTTCAAGCAACTGCATGAGCGTGAGCACGGTAAAAGGATAAACCAGATTGAGTCTGCTAGAGGGAACAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTCACACCCAAAGTGGGGTATGGTTTGGCAGATGAGCTCAAACGAGCTGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCGCAGGCTGCAGATCGAGCATTGCAAAGCCACATTGTGGATGTCATGGATCATAGGCGGGTTGAGTGTGTGGTTCTTGTGTCTGATGATTCTGATTTTGTTGATGTGATAAAGGAGGCAAGGCTGCGATGTCTGAAGACGGTTGTCGTTGGGGATATTGATGATGGTGTCTTGAAGAGGACTGCCGATACTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAACAGGCTGCTTCGGTTGTGAAAAACTGGAAGGATCGTGATATTTTGAAGAGGTTAGAGTGGACATATAACCCTGATGCAGATAAAAATAAATTGGATGTGGATGTGGATGATATTGTAGCTGAAACATCTGAAGATGATAATATTGAAGATACCTCTGATGAAGTTGACGATGTCTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGACAATGATGTCTCAGAGGGACAGTCGGGCAAATTATCCGATTTATCTGTGCATAAGTGA


Promoter Sequence:
>Vu_21790::LG5:36227041-36229041(+)
TACGCATACTAGACCGAACACGGACTCCTTTCAGAACATTGGAAATTTAAAAGACTTAAAAGCAAATCATCATATAATTGAGACCCTGATCTACAGGTCATCTGGTCCAACTAGTTCAGAGTACAGTACGATCATGGAGGTATTTGGATCTCACTCACATAATTCAATGGAATACATGCTATGGTAATATCGAGTGTAATGTAAATATGAGATAGACAATAACAACTCAAAGTTACAAAGTTAGTTATAGCCAAATCTTATTAAATATTTATGCAAAAGCATTTCATATTGACAGTGCAAATGCATTAAATTAAATTTAAAAGAAAAGAGCAAGCAGAAGTGAGAAGTCACTATTTTTTTACATTTTCTTTACTTCATAAAAGCAAAGATGGAATATCGAACTATCTTGGTTTCATACAGTCATGCTACCAGTATATTTGATTCATGACAATAAAGCAATGAGATCATGGTAAGTCCATTTTTTCCTTTCTCTGTCCTCAGGGTGAAGAGAAGAGTACACTTCTTCACAGCTTTTAAGAAAATGACCTTTCCCAAACGCAGTAATGACCAGAGAATCTGTATTCAATTCTACTACTCTGTCCAGATAGCCCATTCTTCTCCATGATTCTAAAGCTCCTCTACCATCAAAACCAATTCTACTGGCATCCATTACAATTCCAACAGTGACAATATCAGGCCGCACCCGGTAGATTGGCAGTTGAGACAGTAAAATTCTCAAACGCCTGAAATCTTTCATCTTCACATAAGCCAACATGATAATATTTGCAACAGCAACACTCCAATTGATCTTGGAATCTAGCATTTCTTTAACTACTATATCCATTCCCTTTTTACTCAAAAGACATGCATAAGAAAGGAGTCGGAGACACCAAACAAGATCACTCTCACCAAATGCCGAACATAAGTCTAGTGCCAGGTCTTCCAGTCGAGAAAACATGTAGTTCTTGATATAAACTTCAGCCATTTTTCTAATCACATCATCCTCTACACATGTTTTTGAATTCAAGACTTTCCTGTAAAATTTTTCCATCTTTTCAACAATCCCAAATGTGGTGTAAGCCTTTAGCATTGCAACAAAAGTATAAGATTGCAATTTCATTCTCTTTGAAAGCATTCTCTGGTATAGCTTTTCCATTCTCTGGAGTAGCCCACCTCGAGCATACTCCTGGATAAGTATATTATAAGTGATATGATCGGGAGGACATCCATCCAACTCCATCTTTTTCACACACTCACTCATCTCATCATACATTTGAAATTTCCCATAGGCTCCAATCAAACCATCATAGGTTTCAGAATCTGGCTCTAAGCCAGATTCTTTCATCTCATCAAAAAACCGTAAAGCATCACTGAACTTACCAGCTCTGGATAATCCATGAATTATTGGATTATAAGTGTCCAAACAAGGCTTCATACCTTGAACTTTCATCTCTTGCAATGCAGCTAACGCCTCTTCCATCGTTTCATCTTCGCATAACAAGCCTATTATCTTGTTATAGTTGAACTCACTAATCCGAGATTTCTCAATGTTCTTCCACATGTCAAACACCTATTAATGCAAAGTGCTGAGAAAGTAAGGATTCAATTCACAAGGGAAGAAATGATACTAAAAAAAGTGTCATAAAACAGGATCGAATGGAATAAACCATAAATTTGGTCCTGAAGTGTTACTCAACCTTTCTAAGTAATTTCCAAAGTACCAAAGCTATATAAGTATCAAAGTATTCAATATCTATCAGTTTTTTCCTCATGTTAGCGTATTTTACTTCCGTTCAGGGACCAATGAAGGGTTTTCCAATGCTAAAACTTGGGGATTATTTACGTAGTTTTTTTTCTTTTACTTTAAAACCCATTAAGAGAAAGGCTGATACTCTACAATGAAATTTAAGGTTTATTTGGAACAGAAATCAACTTTGTCACAAAAATTAAAAATTGGCATTAGGGTCCCTACCTGAAGGATTTCGGCGAACCTTGAGGCA


Gene Sequence:
>Vu_21790(+)
ATGTTTAAGGAACCTGACAGCAGCCCAAAAATGGTCTTTGGACCAATCTCCATCTTGGGCGAGTATGTTGATAGGGTCGGAATCCTCCCTCTCAAGCTTTACAAGTAGGGCTCTGAGGCTGTCATGGTGATGGTAAGTCTCAACCAGAAGAGTTCTGTGCTTTGTGTCTGAAACTGAGTCAGCGAAAGGTAATCGGTGGAAAGAGGCGTGGCAAATTTGAGTGGTGAGGGATGGGAATGTGGCATAGGGTTTTGGGAAGACGCTGCTCTTGCTCCTTCTGCAATAGGGATTCAACTTCAACAACAGCACACACTGATTCTGACTGTGAGTCACAGCATTCACCATTTTTCTTCATTTCAATTTTCAACCCTCCTGCCTCCTTTTTTCTATATAAAAAACTAACCTTTCATCCCTCCCCTAATTTAAAACATTAAAAATATTAATATTTTGAAATATAAAATGTTATTAAAGAATAATAAAATTATATATTTAAACCTGTTAGATATAACAAACAAAAATAAATTATTGGAAGAAATATACTGAAAGTAAAAGTGATTGCAAAAGTTGATTGGAAGAAATAAGTTATTCTCGATCAGCTAGGCCTTTCTGCGGCCGGGAGAAGACCCCACAAGGCCTCCACTGGTGTCGCCGGCGCCGGTGCCAGGGGATTACGCAGTTCCGTCATTTTCTCCCTCCTCATCTTCCAACGTTTCCACACAGTTTCCTGCTAGTAAATGTGCACAAAACTTAAATTTAGGTAATGTTTATCACAGTCCACATTTGATTGAATTTGAAGAATCTCCACATTCGCGCCACGTTGATTCTTTTTCCGCTTCTATTTCGCCGAGTAACTGTTCGACGAAATGTCCCAACCATGCACTTCCTCACTGCACCGTTACCTTCGCTGCTCTCTCCCCTTTTGACCCCTTCCTTCCCCCACCCTCATTCTACTTCTCCTGCTCGACCGGTTGGGTGCTCCGATTCGTAGTTCTGAAAATGGTGTAAGAAGATGGTTTATCTACAATCTCCATTACTCTTTCTCTTTCATTGAAACTTGATTGGACCCAATGGTTACTTTTAAAAGCTATTTGACTTATAGAAGAACAGATAACCCTTTCAAAGTCTCCAGATTTCGTAGCATTTGCTTTTTCACACTAGAAGCTACATGCTGGCATATATACGGTGGCTTGAGATATTATCATTCTGGATCAGAATGGGGTAAAAATCAGAAATTGAATCCAAACGAAAAGCCAAACAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAATGCAATCCCACCTTTTGATGTTGCCAATAAGCTGAGAATAGCTGCATCTTCCTTTGGGATTGTTCGTTACATGGTGGCTTATGCAAATAGCCACACTTTTAGTCATGTTCCTCAATCTGTACGGGAGAAAAGGAAAGAGAGGGAACTGTTGTATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTCATACTAATGACAAGCTTGTCAACCATTTCAAGCAACTGCATGAGCGTGAGCACGGTAAAAGGATAAACCAGATTGAGTCTGCTAGAGGGAACAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTCACACCCAAAGTGGGGTATGGTTTGGCAGATGAGCTCAAACGAGCTGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCGCAGGCTGCAGATCGAGCATTGCAAAGCCACATTGTGGATGTCATGGATCATAGGCGGGTTGAGTGTGTGGTTCTTGTGTCTGATGATTCTGATTTTGTTGATGTGATAAAGGAGGCAAGGCTGCGATGTCTGAAGACGGTTGTCGTTGGGGATATTGATGATGGTGTCTTGAAGAGGACTGCCGATACTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAACAGGCTGCTTCGGTTGTGAAAAACTGGAAGGATCGTGATATTTTGAAGAGGTTAGAGTGGACATATAACCCTGATGCAGATAAAAATAAATTGGATGTGGATGTGGATGATATTGTAGCTGAAACATCTGAAGATGATAATATTGAAGATACCTCTGATGAAGTTGACGATGTCTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGACAATGATGTCTCAGAGGGACAGTCGGGCAAATTATCCGATTTATCTGTGCATAAGTGA