Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22211 LG5 50723699 50725703 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of pollen tube growth, regulation of pollen tube growth, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of pollen tube growth, regulation of pollen tube growth, pollen sperm cell differentiation, regulation of pollen tube growth, regulation of transcription, DNA-templated, regulation of pollen tube growth, regulation of transcription, DNA-templated, regulation of pollen tube growth, regulation of transcription, DNA-templated, pollen sperm cell differentiation, positive regulation of transcription, DNA-templated, pollen sperm cell differentiation, pollen sperm cell differentiation, regulation of pollen tube growth, positive regulation of transcription, DNA-templated, regulation of gene expression, pollen sperm cell differentiation, pollen sperm cell differentiation, pollen sperm cell differentiation, regulation of pollen tube growth, regulation of pollen tube growth, pollen sperm cell differentiation, regulation of pollen tube growth, regulation of pollen tube growth, regulation of pollen tube growth, regulation of pollen tube growth, regulation of pollen tube growth, regulation of pollen tube growth
Cellular Component   located in   nucleus, nucleus, pollen tube, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/T 50723789 missense_variant p.Arg487Ser
C/G 50723803 missense_variant p.Ser482Thr
C/A 50724045 intron_variant
G/C 50724281 missense_variant p.Asp349Glu
A/G 50724344 synonymous_variant p.Ser328Ser
G/C 50724436 missense_variant p.Pro298Ala
A/T 50725059 intron_variant
G/A 50725305 intron_variant
A/G 50725395 synonymous_variant p.Pro103Pro
C/T 50725476 synonymous_variant p.Gly76Gly
C/A 50725590 missense_variant p.Leu38Phe
A/T 50725591 stop_gained p.Leu38*
A/C 50725656 synonymous_variant p.Gly16Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22211.1
MEGMANSNGDSNGENGLLAVFGGNEFGGGGGGEGGGKLEEVILKKGPWTAAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIIELHSQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYADENDHHCSTTPNPSPCFTQTGSNPNNNLTNFEFFKQSHHQHYHQQQQQQQEQQHSQQQPLSPSPTQHSPLSSPFHHRQPFTTSSPLTFLDQSPLPLSSSSPSSLSFTFQRPEPLLCTPLRFKRYRASSSYNPLPDLPLTTQFPHLDAFRFPVSSGFSPYFQPSFLESDRGISSSSSFQPKLDLPSSQFYKPPQDQDIKLDIDFNDPSFQTGSGLLGGLLLEAQALASGQNSKKRPHLSLNEGNDFFDACQSFEDFPSSSLYWPSSASAAKAKEEAPDLSKFTNEELSSLRTVIPSSNTQGHDWLNNGDPEGLNVQPCDSGMTDDNFGVDLKPVASLFPLTNTTNHNENQGCYPWDNLPGLC*


CDS Sequence:
>Vu_22211.1
ATGGAGGGTATGGCAAACAGTAATGGTGATTCCAATGGGGAGAATGGTTTGTTGGCAGTGTTTGGTGGCAATGAATTTGGTGGCGGCGGCGGTGGTGAGGGTGGTGGCAAATTGGAGGAGGTGATTCTGAAGAAGGGTCCTTGGACAGCTGCAGAAGATGCTGTTCTCATAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACAGGGTTGAATAGGTGTGGGAAGAGTTGTAGGCTTAGGTGGGCCAACCATTTGAGGCCCAATTTGAAAAAAGGTGCATTCTCTCCTGAGGAAGAAAAGCTCATCATTGAACTCCATTCACAATTTGGCAACAAATGGGCCAGAATGGCTGCTCTGTTGCCTGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACAAGGATCAAACGTCGCCAAAGACAAGGTCTCCCTCTCTATGCAGATGAGAATGATCACCATTGTTCCACAACACCAAATCCTTCTCCATGCTTCACACAAACAGGATCAAACCCTAATAACAATCTCACAAACTTTGAGTTCTTCAAACAAAGCCACCACCAACACTATCATCAACAACAACAACAACAACAAGAGCAACAACACTCACAACAACAACCTCTATCTCCATCTCCAACTCAACATTCCCCTCTGAGTTCCCCTTTCCATCACAGACAACCCTTCACCACTTCTTCACCTCTCACTTTCTTAGACCAGTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCTCTCTCTCCTTCACCTTCCAAAGACCAGAACCACTCCTATGCACCCCTCTTCGCTTCAAACGCTACCGTGCCTCTTCAAGCTACAACCCCCTCCCCGACCTTCCTCTCACAACCCAATTCCCTCATCTTGATGCATTCAGATTCCCAGTTTCTTCAGGTTTCTCTCCATATTTTCAACCATCTTTCTTAGAATCTGACCGAGGCATTTCTTCTTCCTCCTCCTTCCAACCCAAGTTGGATCTCCCTTCAAGCCAGTTCTACAAACCACCCCAAGACCAAGACATTAAGCTTGACATTGATTTCAACGACCCTTCATTCCAAACCGGTAGCGGATTGCTGGGGGGTCTTCTCTTGGAGGCTCAGGCTTTGGCTTCGGGTCAGAACTCAAAGAAACGACCCCACTTGAGTTTAAACGAGGGAAATGATTTTTTCGATGCATGCCAAAGCTTTGAGGACTTTCCATCTAGCTCGCTTTACTGGCCTTCTTCTGCATCAGCAGCAAAAGCAAAGGAAGAAGCACCAGACTTGAGCAAGTTCACGAATGAAGAGTTGTCATCATTGCGTACGGTGATTCCATCTTCCAACACACAGGGTCATGACTGGCTCAACAATGGCGATCCAGAAGGGTTGAATGTGCAACCCTGTGACAGTGGCATGACAGATGACAACTTTGGAGTTGATTTGAAGCCCGTGGCTTCATTGTTTCCTCTCACCAACACCACAAACCATAACGAAAACCAAGGTTGCTACCCTTGGGACAATTTGCCTGGTCTCTGCTAA


Promoter Sequence:
>Vu_22211::LG5:50725703-50727703(-)
CGTGGATTTTCTGTTTGTTTAGGTTATTTCTTTTGGGTATAGAATGGACATTCTTGCTAGTGGAGGAAGGGAGGTTTCCTTAGGGATACTTACTTGTAATTCTGTTTTACATACTTTATAGAATTAATAAAATTCATACACATACATACTTTCATTTTTGTTGTTATAGTATTTGAGTGAGGAGAGAGCATCGATTTAGGTTTCTCGCATAAAGAAACTTAACAACTTGACTGGCCTTGTGTCTAAAAGATTTAATCACACACAATAGAATATAATGCGAGTAAATAAGCAATTGGACTACTCGGTCATTTAATAATTTTGTTCACTTTCAAAAAGCTATTAACTTTGGAGTTGGGAAAAACTTATGCCCCTACTCAACCTGTTATTATAACATGATATAATTTGTCATGACCCATTGTAGGCCTAATCGATAAGAATTTAACAATAAAATTTATGAAATATTTTAATTATCTTTTAATATATTTAATAAGATATATGATATTGATTGTGTGATATAAACACAATCCGATTAACAAAATTCATTTATTAATTTATTTATCATATGTGTTATTGTATTTTATTTTAACGGACTTAAAAAACTTATAAATACATATTATTACATACAATCATCTTATAACCTTCTTTTACTCACAAACATTCATTCATACTCTCTTAGCTACTTTAATGTTGGGGTCGAGTCTTTGCAACTAGACTTCCTTTCTTGAGGTAATTCAGAATTCGATCACACCTTATAACATATCGAAGACTATTTGATTAAATTCGAAAAAAAATAGTTTTAGTTTTAAATATATTAAATAATACATATAAATTATTAGATTTTTTTCTTAAATGTTATGTTATAACAATATATAACTGCGCATTTTTTTTAATTTTACTAAAATAATTATTTGTGAAAATTAAAATAATTATCTTAGGAGTTTTATATTTTAAGTCACAACTTTTTAAATTTAACCGTTTTAATATTTTTTTAAAGTAAAATAATTATTTATAATAAAAATATTACTTATAAAATAAATAAAAATTATCTTAAAAAATTTATAAAAATTACTTAAATTTATTTTTATAATTAAATTAAAATTTATTATTTTTGTTACGATAAAAAATAACATATCCGAACGTGGGTGGTTTCACAGAATTTATAATTAATTTCAGCTTCGGCTGGGACATAAATGAATAAAACAATATTTTTAACAACATATTTAAGTTATATTTCTTTAATTAATTCAAATAACGAATTAATATACGTAGAATCTAGTATAAACAATGTCCAACACATATTCCCCATGCATGACGTGTTTCAAAATACTTCTATAATCCAAATGTTCCAACGTAGTTTCCCGCAACCTAGGATGTAACAACACACTACTGTGCTGTGTGCATTATAGTCACAGCTCATGCCACATATTTTTACATGCAAATTCAAGTTCATTCCCTTAGTGTGATGGATTTTCTATTTTTGAACACCATGTGTTTCTCTTAATGCTTGTCCCTTCTGTTCAATCTCCACATAGCAGCAAAAAACTGAGTTGTTACAAGCTTAGAGGACAGCAAGGGCTACGAAGAACCATTGGCTCTGAGAGTTTCTAGGAACCTAAATTTTAGCACTTCCTCTAAATTTCGGTCCCTTCAAAAGCCACTGTGGAACAAAGCACCCTCATTCAGTTTACGCCAAAACAACAACCTCTGCCACCATTCAAAACAACAACCTCTGCCACCCTTCACCGCCGCCGCCGCAGCCACAAACCAGTTCCTAGCTCCTACCCTCTCTTTTTGTAGAGTGGTTTATTTGGAGCTTAGGAATTAACCTGTATACTCACACTTTAATATACAGTTTATTGCATAACATGAATGCATTGAGCACGTGAAGATAAATTAAGTATTTGGCTTATGGACAGAGAATTGCAGAGGCTAAACAGATATCAAGAGGGGGGAAGTTGAACTAACTTATTTGATTTCTCCAGTTTTGGTGAAGGAGCTTG


Gene Sequence:
>Vu_22211(-)
ATGGAGGGTATGGCAAACAGTAATGGTGATTCCAATGGGGAGAATGGTTTGTTGGCAGTGTTTGGTGGCAATGAATTTGGTGGCGGCGGCGGTGGTGAGGGTGGTGGCAAATTGGAGGAGGTGATTCTGAAGAAGGGTCCTTGGACAGCTGCAGAAGATGCTGTTCTCATAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACAGGGTTGAATAGGTGTGGGAAGAGTTGTAGGCTTAGGTGGGCCAACCATTTGAGGCCCAATTTGAAAAAAGGTGCATTCTCTCCTGAGGAAGAAAAGCTCATCATTGAACTCCATTCACAATTTGGCAACAAATGGGCCAGAATGGCTGCTCTGGTATGCATTTTCTTTATCTTCTTTTCTTCACAGCTTCAGAATATATATTGTATCTGCAAATGTATCTAATCACTCCAAAACTAAAGCTACAATAAAAATATTTTAAGTTCTCAATTCTTAAAGATTGACATGTTTGTCAGTGCTTGTTAACATGGTAAGTTTTAATTTTAGTCTTTTCAGAAAAAACTGTCCTAATTTTGATTGGTGTATTTTTATCATCATTTACTAATAATATATGATATGCATTTAGACATGTCTTGTTAAAGTGATCCTTGATTGAACATTTTAATGCACCATGTTCCGTCTAAAATTGCACTAATATAGTAAAGAAAACCAGATTTTGAACTCTGTTTCTTTGGTTGCTGCTGCCACACAGTTGCCTGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACAAGGATCAAACGTCGCCAAAGACAAGGTCTCCCTCTCTATGCAGATGAGAATGATCACCATTGTTCCACAACACCAAATCCTTCTCCATGCTTCACACAAACAGGATCAAACCCTAATAACAATCTCACAAACTTTGAGTTCTTCAAACAAAGCCACCACCAACACTATCATCAACAACAACAACAACAACAAGAGCAACAACACTCACAACAACAACCTCTATCTCCATCTCCAACTCAACATTCCCCTCTGAGTTCCCCTTTCCATCACAGACAACCCTTCACCACTTCTTCACCTCTCACTTTCTTAGACCAGTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCTCTCTCTCCTTCACCTTCCAAAGACCAGAACCACTCCTATGCACCCCTCTTCGCTTCAAACGCTACCGTGCCTCTTCAAGCTACAACCCCCTCCCCGACCTTCCTCTCACAACCCAATTCCCTCATCTTGATGCATTCAGATTCCCAGTTTCTTCAGGTTTCTCTCCATATTTTCAACCATCTTTCTTAGAATCTGACCGAGGCATTTCTTCTTCCTCCTCCTTCCAACCCAAGTTGGATCTCCCTTCAAGCCAGTTCTACAAACCACCCCAAGACCAAGACATTAAGCTTGACATTGATTTCAACGACCCTTCATTCCAAACCGGTAGCGGATTGCTGGGGGGTCTTCTCTTGGAGGCTCAGGCTTTGGCTTCGGGTCAGAACTCAAAGAAACGACCCCACTTGAGTTTAAACGAGGGAAATGATTTTTTCGATGCATGCCAAAGCTTTGAGGACTTTCCATCTAGCTCGCTTTACTGGCCTTCTTCTGCATCAGGTTGGTTTCATTTTTGTTACTATGCTTAAAGTTTTGAATATTTGATGATTGATTCCATTTGAATGATGATGCATGCAGCAGCAAAAGCAAAGGAAGAAGCACCAGACTTGAGCAAGTTCACGAATGAAGAGTTGTCATCATTGCGTACGGTGATTCCATCTTCCAACACACAGGGTCATGACTGGCTCAACAATGGCGATCCAGAAGGGTTGAATGTGCAACCCTGTGACAGTGGCATGACAGATGACAACTTTGGAGTTGATTTGAAGCCCGTGGCTTCATTGTTTCCTCTCACCAACACCACAAACCATAACGAAAACCAAGGTTGCTACCCTTGGGACAATTTGCCTGGTCTCTGCTAA