Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22389 LG5 54115522 54116139 PREDICTED: nuclear transcription factor Y subunit B-1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   abscisic acid-activated signaling pathway, blue light signaling pathway, embryo development ending in seed dormancy, embryo development ending in seed dormancy, regulation of transcription by RNA polymerase II, positive regulation of transcription, DNA-templated, positive regulation of fatty acid biosynthetic process, somatic embryogenesis, blue light signaling pathway, regulation of transcription by RNA polymerase II, somatic embryogenesis, positive regulation of transcription, DNA-templated, regulation of gene expression, epigenetic, positive regulation of transcription, DNA-templated, abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, embryo development ending in seed dormancy, somatic embryogenesis, somatic embryogenesis, blue light signaling pathway, positive regulation of transcription, DNA-templated, positive regulation of fatty acid biosynthetic process, abscisic acid-activated signaling pathway, regulation of transcription by RNA polymerase II, positive regulation of transcription, DNA-templated, embryo development ending in seed dormancy, positive regulation of fatty acid biosynthetic process, somatic embryogenesis, abscisic acid-activated signaling pathway, blue light signaling pathway, regulation of transcription by RNA polymerase II, positive regulation of transcription, DNA-templated, embryo development ending in seed dormancy, positive regulation of transcription, DNA-templated, positive regulation of fatty acid biosynthetic process
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein heterodimerization activity, protein binding, DNA-binding transcription activator activity, RNA polymerase II-specific, chromatin binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
G/T 54115603 missense_variant p.Asp28Tyr
A/G 54115704 synonymous_variant p.Leu61Leu
C/T 54115719 synonymous_variant p.Tyr66Tyr
A/C 54115720 missense_variant p.Ile67Leu
A/G 54115809 synonymous_variant p.Glu96Glu
T/C 54115821 synonymous_variant p.Phe100Phe
G/C 54115994 missense_variant p.Cys158Ser
G/A 54116064 synonymous_variant p.Leu181Leu
C/A 54116090 missense_variant p.Ala190Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22389.1
MPMQQENNYANTETAADGVEIPNLIGRDKSKMPITNVTKIMRKFLPNTAKVSDGAKEMIQLSATNYITHVTRKAKEKCQSEYRKIMNADDLLWAIENVGFDEYIGPLSTFLQRCRHFEGASANGPAFGPTFGPDLNPLEMPHPPLPPPPPPPPPPVVCSSGLDFSMQQNTIFDPNDVSGYLDGVGCSNNAFINFDPFSLFQQDQL*


CDS Sequence:
>Vu_22389.1
ATGCCTATGCAGCAAGAAAACAACTATGCGAACACAGAAACTGCAGCAGATGGAGTTGAAATCCCTAATTTGATTGGGAGAGATAAGAGCAAGATGCCAATTACAAATGTGACAAAAATCATGAGAAAATTCCTTCCAAACACTGCAAAAGTCTCTGATGGAGCCAAAGAGATGATTCAACTAAGTGCTACAAACTACATAACCCATGTAACAAGAAAAGCCAAAGAGAAGTGCCAGAGTGAGTACAGAAAGATTATGAATGCAGATGACTTGTTATGGGCCATTGAAAATGTGGGCTTTGATGAATACATTGGGCCTCTCAGTACTTTTCTCCAACGTTGTCGTCACTTTGAAGGAGCTAGTGCTAATGGGCCTGCTTTTGGGCCTACTTTTGGGCCTGACCTTAACCCTCTGGAAATGCCCCACCCTCCTCTACCACCTCCGCCACCACCGCCACCACCACCGGTGGTTTGTTCATCTGGGTTAGACTTTTCCATGCAGCAAAACACAATATTTGACCCAAATGATGTGAGCGGATACCTGGATGGTGTTGGTTGCTCAAACAATGCTTTTATCAACTTTGATCCTTTTTCCCTCTTCCAACAGGATCAGCTCTGA


Promoter Sequence:
>Vu_22389::LG5:54113522-54115522(+)
ATTTTTAACTAGATTTTCTTATACATTATTATCCTACCAAAAATAAGAAGAAACTTACACACACAAAAAAAAAACAACTCTTTTTATAAATTTTGTTATATCTTGACACTTTTATGGTGTTTTTTTTATAAGCCTCATCAACCAATTTTTAATTATTATTAATATATTTCTTAAATTTTATTGTGAGTGTCTTATTGTAGAGAAAAATGTAAAATTTTAAAAAAAAAAATTTTACAGTGTGAATTATATAGATTTTTTAGTTTCATTTGAGATTTGTATCATGTTAATTATATATATATATATATTACTCATGTTACCATGTGAATATTAATTATATTTCGGTTTCAGTGATATATCAGTGTCAACGTTGATTCGTTAAGGAAGAATACAAACTATAAAAAGTAAAAAAAACGTGAGATTGATACTGATAATTATAAAATGTTTTATATCATTTATTTTTTCAATATATAACTATGTCTTATTAATTATGAATTGTTACACCATTTTTCACTTATGTGAGTTAAATGGCCCTTTAAATACTACCTTATCATATAGTACTCTTATGAGCATAATTATATACTAATAATTGTATAGAATTTCTAGTTTCCTATTCCATATCCAACATTATTTTTTTTTTTATACTTTTGTGTTGAAACTATAGGGATTGTGCCATAAGCATGTACAATGTCTCGTATTATTTAGTTTTAACATATATGTTTACTTATATTTTTATTTATGTTACCTTGATTATTGCAAATTTTGTTATTGAAGTTATAATGATAAATGCATATTTAGGATATAGTTATTTAAATAATTAATGTTTGCATTGGTCAATTTCTAACTTGAAGAATTGGTTTATGTAATGGTCTATACACAAAGTAATTTAAAATCAAGGACATTTTGGCTAAACTAAATTCATAATTATTCTAGCAAAAATCAATTAAATGGTCATGTCATGGCTGTGTTATTTTATTTTAAAACTTCAGTTGAATAAAGTTCTAATTCAACTATAGTACTTGTTTTTTGTGTGTTCATCTAATGTCATAATTGTGCCACATATAAACTATTGAGTTTGTTTTTCATGAAGGATGGAACTTTTTTTTTCCATTTTTCTTCTTCTTATTATTCTATTTATAAACTATTTTGGCTTTTGCACTTGAAATATGATTTCAATGTGTAGTTGACTTTTGTGGAAGACTTTTTATTTCAATTTTATGGTATAATGAACCTAAGGGTAGCAATATATTCCTTTTATACTATGATGGATCTATACTAGTTGAAGGAATTTTTTTTACCATTTTTTAACAAATGCTTAAAAAAAGAAAAATATCATAAAAAGTATGTAATACTTTGCAATTAATTTATACAAGTAGTAAAAATTTAATCTCTCAAACTAATTGCACCTTTTTTATTTGCTCAGTACATAGAACTAATCTAAGAGATATGTTGAATTGCTGGTAAGAAAAATTGTCAAAGCATAACCCTTAATTTTTTTTATAGTAATATTGAAAGTTTCATATGGATAAAAGATAAAACTATAGTAATGCAAATCTAATCTTATAAGTTGATTGTGTGAGGTTGAGTTATGTTTATAGTATTAGAGTCATGAATTAAAGTCTATCATAATAAAATTTGTTGTTTATTGAACCTATCGTGTCAACTGTTATCGAGTTGTTATAAAATAATTCATTAATGTCTAATTCTAAGTTTGAAATTTATATATCTTGATATAAGAAATGTGTGTTAAAAGTCCTATTTCGATTAGAGATATGCTTATAATTGATTTTGTATAGTTGAATTAAGATTATAGTTTAAATTACTATTTTAAAATTCTAATTCTACACATATTTATTAACTAGTTGTTTAGTAAATTATATTAATTTCCTTAATTTATATTCCAAAATTGTAATATTTGGTTTGCACCTCCGAAATGCAATGATGAATCTGATTGAAGTTTTGAACGATGTAATTATCTTTTTTTATCGGTTCAGGTTTAACAA


Gene Sequence:
>Vu_22389(+)
ATGCCTATGCAGCAAGAAAACAACTATGCGAACACAGAAACTGCAGCAGATGGAGTTGAAATCCCTAATTTGATTGGGAGAGATAAGAGCAAGATGCCAATTACAAATGTGACAAAAATCATGAGAAAATTCCTTCCAAACACTGCAAAAGTCTCTGATGGAGCCAAAGAGATGATTCAACTAAGTGCTACAAACTACATAACCCATGTAACAAGAAAAGCCAAAGAGAAGTGCCAGAGTGAGTACAGAAAGATTATGAATGCAGATGACTTGTTATGGGCCATTGAAAATGTGGGCTTTGATGAATACATTGGGCCTCTCAGTACTTTTCTCCAACGTTGTCGTCACTTTGAAGGAGCTAGTGCTAATGGGCCTGCTTTTGGGCCTACTTTTGGGCCTGACCTTAACCCTCTGGAAATGCCCCACCCTCCTCTACCACCTCCGCCACCACCGCCACCACCACCGGTGGTTTGTTCATCTGGGTTAGACTTTTCCATGCAGCAAAACACAATATTTGACCCAAATGATGTGAGCGGATACCTGGATGGTGTTGGTTGCTCAAACAATGCTTTTATCAACTTTGATCCTTTTTCCCTCTTCCAACAGGATCAGCTCTGA