Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22474 LG5 55402772 55406725 PREDICTED: nuclear transcription factor Y subunit A-1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of timing of transition from vegetative to reproductive phase, embryo development ending in seed dormancy, embryo development ending in seed dormancy, microgametogenesis, regulation of transcription by RNA polymerase II, embryo development ending in seed dormancy, embryo development ending in seed dormancy, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, embryo development ending in seed dormancy, embryo development ending in seed dormancy, regulation of transcription, DNA-templated, somatic embryogenesis, seed development, regulation of transcription by RNA polymerase II, embryo development ending in seed dormancy, seed development, seed development, embryo development ending in seed dormancy, regulation of transcription, DNA-templated, seed development, somatic embryogenesis, regulation of transcription, DNA-templated, embryo development ending in seed dormancy, embryo development ending in seed dormancy, somatic embryogenesis, somatic embryogenesis, somatic embryogenesis
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
T/A 55402896 3_prime_UTR_variant
G/C 55402966 missense_variant p.Asn334Lys
G/A 55403150 missense_variant p.Ala273Val
G/A 55403339 missense_variant&splice_region_variant p.Pro210Leu
T/C 55403485 downstream_gene_variant
A/G 55403689 downstream_gene_variant
A/G 55404624 synonymous_variant p.Phe159Phe
T/G 55404695 downstream_gene_variant
T/C 55404745 downstream_gene_variant
A/G 55404752 downstream_gene_variant
C/A 55404775 downstream_gene_variant
A/T 55404783 downstream_gene_variant
T/A 55405271 downstream_gene_variant
C/G 55405868 downstream_gene_variant
G/C 55406121 downstream_gene_variant
A/G 55406123 downstream_gene_variant
A/C 55406125 downstream_gene_variant
A/C 55406128 downstream_gene_variant
T/C 55406131 downstream_gene_variant
C/T 55406133 downstream_gene_variant
C/G 55406175 downstream_gene_variant
C/A 55406375 intron_variant
A/G 55406582 5_prime_UTR_variant
T/C 55406610 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22474.1
MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKESQPAAPNEPGNYGQEQQGTQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKSDAEGSNNSGKEKDNGADSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVQNRFEAPGFQNVSGSYNNHHGLQSSVYHSSSGERVEEGDRSGQN*


CDS Sequence:
>Vu_22474.1
ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGCGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGAATCGCAGCCTGCTGCTCCTAACGAACCAGGAAATTATGGGCAAGAACAGCAAGGGACCCAGCATACTGCATCATCTGCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCATATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGGATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGACGGGCGAGGGGTACCGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGTTCAAACAACTCAGGCAAGGAAAAGGATAATGGTGCTGACTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACAGAACAGGTTCGAAGCACCTGGTTTCCAAAATGTCAGTGGCTCTTACAATAATCATCACGGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACCGTTCAGGTCAGAACTAA


Promoter Sequence:
>Vu_22474::LG5:55406725-55408725(-)
TTTCTCGATAAAGAGACTCGTAATGACATCAAAGTTAATAGTTAGCTTTTGTGACCAACTCATATAAATACAATATGAAAAAAAAATTATAAAAGTTTTAAGTAATTGTGTACCGAGTCTAGTCTCATATCATAACGACACCATCAAATTCAGTAAATATAGGTATAAAGACCCATAAACCATTTTAAATTAAAAATAGTATAAAATTCTTATATAAATTGAGCTCAAAGGTGTGTTCTCAACTTTCTCCTTATATAAAAACTCATTCAAAACAATTAAAGATATCAAAACTAAATTACTAATTAAACTTATAAAAAAATATCCTAAAACTACTAAAACAATCTTATATGTTAAAAGATAATAATGTAAAGTTATGGTTTTGTAAAACTCGTTATATCTAGGATATATATATATATATATATATATATATATATATATATATAATATGATATAATGATACTTTGATAACATTTTAACACTGTCTACGTGTCATTCTGTGATTGGTCCAAAATTATTCCACAATCAATAATAATAATCATAAACACCAATATAAACCAATTACAGAATGACACATAGACAATGTTAAAATATTGTCATAAAATTGTTGTCAAAAGTATCACTATCTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAGATATGTGTTGAAGTTGGTCAATTTCCCCTTTTTCCAATCCAACTAAACTTAATTAAGCTGGATGGATTTTTTCTTTCTTTTAAGAACCTAATTCAATTAGAATTAGATTGCGTTAATTAATTTAAAATTATTTTTCTTATAGTAAAAATACCTAAAATTAAATATTTTCGACATTTTTCAATTTTAATAAAATAGCATTAATGCATATTATTTAATTTTATTATTATTACTATTGATGATTAATAATGATTTAATATTAATTTTATGAGATGGCATGAATTTACAAATAGGTGATAAGATTTTAATAGTGATTTAAATATTTTTTATGACCTAATTTAAATCCTTATTATATAAAGAGGAAAATTCACTTGTATAGACATTTCAATGTTTAAGTAATTAGAAAAGTTTAAATACTATTTTAAGAATAATAATTGTATTTGATAATAAACCTATGTTATAATTAGAGTAATAATAACAAATAAGTTACTAACAATAATATAATATCTTAATATAAACAATAATTATAATAACTAAAAATTAGTTATAAATTGTTCAAATAGATGTAAACATGGACTAATAGAGAATAAACATGTTTAATAAATTTTACTGAACTGTATTTTTAATATATTTGTTAGACTGAATAAAAATAAATATAATTAATATTTTGACAATTGTGAAAAAAAATTAACTTTCTCTACTAATATTAAATGTATTTTCATCTCAACGGATTCAATAATTTTTTTTCTAAAAACAATCACAATAATTTTAATTAACTTTACTCAATTTTTAATTAATTCCTTTTATATTTAGAAAAAAAATAAAGTTAGTCGTTCAAATCATAAAAACTGACTAAAATCAGTGTAAAAAACTAATTGAATTCGTCTCAAACACGTGTCTGAGGTTGCTGTCAGCGGTGGAACGATGTGGTCCCCACACAGAGGCCACGCGTTTCGCGGACTTGTGCTGCTCAAGTGCGTGTAACGTGGGCCACATTTTTCTTTTGTTGGGTTCCTCTCAAGGGCCCTGATAACCTCACCCGCAGCCCTCACCCTCAATCCCAACCCACTATCCCCGGTCACGCTTCACCTCTGTCTCACACGACGCACCCTCTCTTGCCACCGGCACTGCCGGTTCCCCTCCTCCACGTGTCCTTGGTGACCCCACAGGTAGGTGACGTCATCATTACCCTTCTTTGTTGAAGAAAAAAAATTAATTAATTGATTAAATAAAGGAAAATGCAGTTTGAGGACTGAAGACTTAAAAAGACCAAGACCCAAAGACTTTGTG


Gene Sequence:
>Vu_22474(-)
AGAGTGTTAAGTTTGTTATTTTACAAATTTTCTTATCTTTTTTTTCATTGAACTTTTGTTTCAATTTTTTTATTTATTTAAACTTTCTCTATTGTAATTGGTGTTGCTGCTATTAATTAATTTCTGGTGCTAATTTGAGAGTGTATGCGTGAGAGACAGAGAGACAGAGAGAGAGGAATCAAGATAGCGCCTTTTGAATTTTCTATCAGAATCTGAGGACCCAAAATCTAGGGTTTTCTGTTCTTTCTCTTGGTAAGTAAGTACTCTGGTATTCTTTTCACTCGATTCTTCTCTCGATTGATTTGGGGGTTTCGTTTAATTGCGTGATTCGTTTCTGTCAGAGTCTTTTGGGGATTAGGGTTTTCGGCTTCGTTCTTCCTATGTGAATTGTTTGAAGATTGGTCGGAGAATTTGTTGACTGATTGAGCTGTGATGTGGGAATTCTTGAATGGAATCACGAAATATATTTTTTTTTTCGTGGCGGGAAGGGGAATTTAGCTGAAATAAGGTTTTGTGTGAATGTGGGGAGAATTGAGTGTTTTGGGGTGGTGTAAAGTGACAAATTTGTTGAAATTTGGCGAGGCTGAGCTTCGTAGGTAGTGTGCGGTTGGTTGTCTGGCACTGACCGACAGTTGGATAACATATGCTGTTGATGTATGCTATGGTCTTCCTGTGCTTCTGTTCGGTTGTCTGTTTGACTAATACGGCTTTAAAAATTTAAGATAGTGTTTGAGTTTTTGTTCCCCTGCTTTATATCTATAGATGTAACTATCATTTGATAGATGTTGTCTATTGTACACAAAATGAATGAATTCCAGCTTTGTTACTTTTAGCTGGTTAAAAAAAAAGGCTTGTTTGATTTTATGATGAATCATGATCAATTTCGGTGTGGGTTGCTGGTTGGTTTTTATCATTCCCCCCCGGAGATTGAATTTATTTTTATAAAGGTTATCAGTTTTGTTTTACTATCAGTTGGCTTTGTCTTAGTGTAAGGAATATGATTTTGTGCATCACTGTGTTGCTTTTGTAGGGATCTGTAGACATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGCGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGAATCGCAGCCTGCTGCTCCTAACGAACCAGGTGCTTAGAGTATCATTTAACCATTTAAAGACACATGATGGAAATGAAATTAGGGAACATAATCAAATGAATTGTTACTTTTTAATTTTGTATTTTGTAACTTTTTCATTCTTCCAACTATTAATACGTTGTATTATTTACTTTGCAGGAAATTATGGGCAAGAACAGCAAGGGACCCAGCATACTGCATCATCTGCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGTCATTCAATTGTTAGTCTTTTCCTTTGGTCTCATCACTTTTTTAACATTTAAACACGGTCCAAATATAGAGTGCATTAATAGCATAAATTCTTGCTGACTCATGCATATCATTTTATAGAAAATATGTAGTAGAATTTATTGCTGCATGTTTTGTGGGATGGATTGGACTCTTTAAATTTTTTGATACAGGCATGTGCTACAAATCCTTATCAAGATCCATATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGTATGTAATTAATCTTGTGCAAATACTTTATCAAAGGTTATGATTGCATATACAGGTCATAGTATAACAGTTACTGAGTTGCAATTTCCTCAAATTTGTGTAATAAGAAATATGGTTAGCATATAATCCTGAACAGATATGTTCTTGTAATAACTGTAAATTTGTTTCATTCTGTTTGATCTATTTTCTTGTTTAAAGAATTGGTCATATTTGGATAGCAGATAAGTAACCAAATAATATTTTTTTTACCATTAGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGGATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGGTACAAATGTGTTGTCTTTGTTATTGTAACTACTATTTGAACAAGTGATATCTAACCACATTTTACGTGAGATATTTTTTAAGCCATGTCTTCTTTTACTGTACTTGTGTACTAAAACTTATAACTCTCTGGTGATCTAAAAAGGAAAATCATTGGGACATGGATTAATTTTATCTAATCTATGTGTGAAGGTTTTCTACCAAAGATGCAATGGAAGTAAAAAAGAAGTCTACCTCGTGAATGTAATTCTGTTTGCCAAAGGGTGTAATATAATCTTGAACACTGACCATGTTTAGATGAAAAAAAAAAGCTAGTGGAATGTGAAATTCCTGTTGTCATGTTGTACCATTGTACAGCATGACCATATTTCAATGTGTGTAGATCGAGATGCTTGTGCATCAATATCCATTTCAGTAATGTCCATGACCATGCTGAATTAAAGATGTTGTGACAAATTGGTTCTCCTTTATTCCAAATTGGAAGTTGGAACTGTGAAAATATTTATGAAATGAACATCTATTGTGTAATAGGCTGAATCAAAATAAATGTAAATAAGAACAACTTCCAATATATTTTTTGCTAGGATCTGTTATTGTAGTCTCAAGGAAGTCAGGAGTGGTAAAATAAATAGCATTGCAATGCAGGCAGCGGAAAACACTGCATAAACGTTAACAACCTTGTTATAACCTATGTTGAAAACCAGAATAATATATTCTGTATTTATTGTAGACATAAAATTTTTAGTAGAGGAAATAAAATATTCTCTATTCATGCATGACGAATGTAATGAATGACTCTGTATAAACTTTCCTCACGGTTTTCATTCCAATCTCTGATTTCTCTCGTAACAACCTAGTATCTCCTATAATGATTTTTCTATATTAACTTCTGGGGACTCCTCTCTAATTTTGCCTTTCAGTGGTAAACATCATATGCAGTTAACTTTATTCCAACAGTAATATGTTTGAAACTGAGAATCAAAACAGGAATTAAGTAGCGTATTCTTTTATTTACCATGTTGAAAATGTTTTTTATGGGACATGGAATTTAGTTCTACTTGTGCCACTGTTGTGTTTGATATTTTCTGGATCACTATTGCACTATTGGGCTGTGCTGACATCTGTGTCTCACAGCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGACGGGCGAGGGGTACCGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGTTCAAACAACTCAGGCAAGGAAAAGGATAATGGTGCTGACTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACAGAACAGGTTCGAAGCACCTGGTTTCCAAAATGTCAGTGGCTCTTACAATAATCATCACGGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACCGTTCAGGTCAGAACTAAACCACAATTGATGGGGGGGGTTTAGAGGCCGAGGTTGGTTTGTATCCTAGAGACATATTGGTGAATACCTTGGTTATCTGTAAACATTCTTGGCAATATATGTGCCAAGCGGCAAATCATTCTTGGCTTTGTTCTTGTGTTTGTGGTGTGAATGATATTATGGGGGAGCGAAAAGAGTGATTGATTATTGA