Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22490 LG5 55629032 55629946 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding
SNP Position Effect Amino acid change
C/G 55629111 missense_variant p.Ser27Cys
G/C 55629172 missense_variant p.Met47Ile
C/G 55629267 intron_variant
A/G 55629271 intron_variant
G/T 55629355 intron_variant
C/T 55629409 missense_variant p.Ala88Val
G/A 55629431 synonymous_variant p.Thr95Thr
T/A 55629541 stop_gained p.Leu132*
G/T 55629544 missense_variant p.Arg133Ile
A/G 55629546 missense_variant p.Ile134Val
T/A 55629673 missense_variant p.Ile176Asn
C/T 55629675 missense_variant p.His177Tyr
G/C 55629714 missense_variant p.Glu190Gln
T/C 55629726 missense_variant p.Ser194Pro
C/T 55629727 missense_variant p.Ser194Leu
C/G 55629793 missense_variant p.Pro216Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22490.1
MAEQSVDWWKELSVDWNDLIGVPSDTSNVPTTFQSHLLPINVEAPLMFPPSQTLEHMQFHSNKGRRITWTKAEHKRFLEGLDIYGKGSWKNISAYVQTKSASQVASHAQKYFIRQSKSKEEKKRKSIHDMVIENTTHTNIHIQNSSSNRNLASSLFYEMQPQQQVIPFNPQINMSHPQELNHINMTYRPREEMINQNHMNSNNIIDYPANFNQMQSSQVIPFNAHINRPHPPELNHINILNRHPPNDGIYPTQFNQMQPTFSNLFM*


CDS Sequence:
>Vu_22490.1
ATGGCAGAGCAGAGTGTGGATTGGTGGAAGGAATTGAGTGTGGATTGGAATGACTTGATCGGTGTGCCATCGGACACCTCCAATGTTCCAACCACCTTCCAGAGTCATCTTCTTCCTATCAATGTGGAAGCTCCTTTGATGTTTCCACCGTCTCAAACATTGGAACACATGCAGTTTCATTCCAACAAAGGAAGAAGGATAACATGGACCAAAGCCGAGCATAAGAGGTTTTTAGAAGGACTTGATATATATGGAAAAGGAAGCTGGAAAAACATTTCAGCCTACGTTCAAACAAAGAGTGCAAGTCAAGTGGCCAGCCATGCACAGAAGTATTTTATCCGTCAAAGTAAATCAAAAGAGGAAAAGAAGAGAAAAAGCATTCATGACATGGTTATTGAGAATACTACTCATACTAATATTCATATTCAAAATTCATCATCCAATAGAAATCTTGCAAGTTCACTATTTTACGAAATGCAACCACAACAACAAGTTATACCCTTCAATCCTCAAATCAACATGTCTCATCCACAAGAGCTAAATCATATCAATATGACTTATCGACCACGAGAAGAAATGATCAACCAAAATCATATGAATTCCAACAACATAATTGATTATCCTGCAAACTTTAATCAAATGCAATCCTCGCAAGTGATACCCTTCAATGCTCACATCAACAGGCCTCATCCACCAGAGTTAAATCATATCAATATCTTAAATCGTCATCCACCAAATGATGGAATATATCCCACACAGTTTAATCAAATGCAACCAACATTTTCAAATTTATTCATGTAG


Promoter Sequence:
>Vu_22490::LG5:55627032-55629032(+)
AAACTTGCCTCTTAAAAAGCAAACGTAAGACAAATGAGTCCACCCACTTCCATCAAACATGTGCTTACCATATACCACCACCAACCAAACGAATTTTGACATTTCAAAAACATAATTACATCAGAAAAACAAGAGTACAAAGTTGTTTTTAAACATATAGAGACAAAAAATAAGCATAGTTCCCTTACCTTAATTTCTTATATATAACTTTTTCTTTGTCCTTAGGTCTTGTTTCCGTTTTCCTCTTCAATAGGTCCTATGCTAACTCTCTCACACACAGAACAATATAATTCCAATGCCAAAAAAAAATGCCCACTAAAACTCACGTTCCCTTTATAACTTATTTTGCACATTGAAAAACAACGAAAATCATTCACTACCACAGTTGCCTCAATTCCCTCAAATATATTTTTACTTCACGTGCCTATCTGTTTTTTTTTCAGAAATAACTTGTACAAATGAGCATAACATAAAAGAAACATTCCTAGAATTTTTTCTATCTCTTATCATTCTTTGAATTTTTTCTATTTCTTAACATTTTTTTGACCTAATGCAGAACATTTAAAAAAATTCATACTTTTATAATCTACACAGATAAAGACAACATAACAAATAACAAAGTACTAATCATACATGTATTTAATACATTAAACGTCATTAAGCATTTAGCAAAGGTACGTTTACTTAAATAGCATTTAAAACAAGTTTTGTTTTTAAAGTAACATTGAACGTTTAAGATAACATTTTACATGATTACATCGTTTAACATACTTATCCTAGACTATTCATTTTATTAGACAATATTTCATTAACCATTTTTGTTAAACTTTGAAACACATATTGCTAGACGATTTTATTTTATTAGACGATGTTGTCTTAGTATAAATGAAAGTAAGACATTCTAAAGCAAAAAAAAAAATAATAAATAAAAATTAAAAACAAGTATACATCAAAAGTGTATCCTATAAATTGTTTTTTTTTATGAGACTAAGATTTGTTTTTATCAAATACAATACATTATTTGAACGAAATTACTAAAAAGAACAAAATTTATAACAGAGTTTAATACATTATTTGAAAAAAAAAATCACTTAAAAGTGTCTAAGTGAACTTTGTATCATATGCCTAATTCTGACATGAGTCTATATGAAAAATATCTTTTATACTACTCATTATTAATATTAAAAAAAAACACATAATTTTGAAGAAAAAGTACACTGTTAGAAATATATTTAGTTATCCAAATTTATGAACATGTAATATTATTAATATCTTATTATTATCTAATTTATCATGTACTTTAAAGTACACCATTTATAATATCCAATATCAACTTCTAAATAATTAGACATAATCTTATTAATAGGATATTGAGATACATTTTATTTTATCGTCAGATATCTATATTATTATAATTTATTATTAATAAATATTGTCATATATTTTATTTTATCGTTACATATCTATATTATCATAATTTATTTTATTTTGAATTTAGTATAAGTAAAATTTTTTTATATACTTTTGATTATCAATATTTAAATAAAAGCTCATAAATTTGATGAAAATTTTAAATATATATTCTCTATCTAGTTTTAATGAACACATAATATAAATAATATCTAGTTTAAACTGTATCATTTATAATCTCAAGCATCAATTAATTTTTATAAAATCACACATATAACAACTATTCAATTCTAATATATTATTTTATTATTTTGTTAGTTATGTTAGTTAAGGAGGTGAGTGAATCTCAATATATACTATACGATATATTTCTAGTTTATAACTTGTCTTATAAATTTTAAAAAGATATTCTTATAGATATAATATCATTAATATCTTAACATTATTTATCATTATTTTGATAGATAAATTTAGTATATCATATTATCATGTTATCTTATCTATAAATAAGACAAGGATGGAGAGAGAAAAGTAACAAAAGATAGAAAGCATAATATTTGTAATAGTGAGTTGGAAAGAAGAAAGAGAAA


Gene Sequence:
>Vu_22490(+)
ATGGCAGAGCAGAGTGTGGATTGGTGGAAGGAATTGAGTGTGGATTGGAATGACTTGATCGGTGTGCCATCGGACACCTCCAATGTTCCAACCACCTTCCAGAGTCATCTTCTTCCTATCAATGTGGAAGCTCCTTTGATGTTTCCACCGTCTCAAACATTGGAACACATGCAGTTTCATTCCAACAAAGGAAGAAGGATAACATGGACCAAAGCCGAGCATAAGTAATTTTCATCTCAATATCTTTGTTTATAATATTTTCACTCTTACTACAACGTTCATAATTTATTTTTTACCATAACATTATATTAATTTTGATATTTGTTTATTGAGTATAGGAGGTTTTTAGAAGGACTTGATATATATGGAAAAGGAAGCTGGAAAAACATTTCAGCCTACGTTCAAACAAAGAGTGCAAGTCAAGTGGCCAGCCATGCACAGAAGTATTTTATCCGTCAAAGTAAATCAAAAGAGGAAAAGAAGAGAAAAAGCATTCATGACATGGTTATTGAGAATACTACTCATACTAATATTCATATTCAAAATTCATCATCCAATAGAAATCTTGCAAGTTCACTATTTTACGAAATGCAACCACAACAACAAGTTATACCCTTCAATCCTCAAATCAACATGTCTCATCCACAAGAGCTAAATCATATCAATATGACTTATCGACCACGAGAAGAAATGATCAACCAAAATCATATGAATTCCAACAACATAATTGATTATCCTGCAAACTTTAATCAAATGCAATCCTCGCAAGTGATACCCTTCAATGCTCACATCAACAGGCCTCATCCACCAGAGTTAAATCATATCAATATCTTAAATCGTCATCCACCAAATGATGGAATATATCCCACACAGTTTAATCAAATGCAACCAACATTTTCAAATTTATTCATGTAG