Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22522 LG5 56085656 56088422 PREDICTED: transcription factor DIVARICATA-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, response to red light, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, small molecule metabolic process, carbohydrate derivative metabolic process
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
A/C 56085671 3_prime_UTR_variant
T/A 56085779 3_prime_UTR_variant
G/A 56086240 stop_gained p.Gln255*
C/G 56086245 missense_variant p.Ser253Thr
G/C 56086310 missense_variant p.His231Gln
G/A 56086355 synonymous_variant p.Ser216Ser
C/A 56086545 missense_variant p.Gly153Val
G/T 56087133 missense_variant p.Asn82Lys
G/A 56087139 synonymous_variant p.Val80Val
A/G 56087241 synonymous_variant p.Tyr46Tyr
G/A 56087325 synonymous_variant p.Ser18Ser
G/A 56087460 5_prime_UTR_variant
T/C 56087650 5_prime_UTR_variant
T/A 56088073 5_prime_UTR_variant
G/T 56088186 5_prime_UTR_variant
T/A 56088394 5_prime_UTR_variant
C/A 56088419 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22522.1
MKWEMEILPPASPYMYNSNWLLDDNRTNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSEDSSKRSTSPQHSVMLSHHHQHHQQQPISSAASSGMNFQWSNQSNAGIAMALNPAHEQVFVSPYGLNSYGFKVQGQSLHRSPLHESSYLGPQTPNMVFQMQPSQHYSHA*


CDS Sequence:
>Vu_22522.1
ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCCTCGCCTTACATGTACAACTCCAATTGGCTTTTGGATGATAACAGGACCAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGCACAAGGTGGCTGAGATGATACCAGGAAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGAATTGGAAGCAGATGTCTGTAACATAGAAGCTGGCTTGATCCCGATTCCAGGCTACAGTACCACCACCTCACCCTTCACCCTAGACTGGGTGAACACTCCTGGCTACGATGGCTTCAAAGGCCTCACTGCTAAGAGATCCTCCTCTGGCAGACCTCCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAAGTTGTTTCTACTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATTTCACGCAATTTTGTGATCACTCGAACGCCAACTCAAGTTGCCAGTCACGCTCAGAAGTACTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGACATCACAACAGTGAATCTCACAGAAACCACCAGAACTTCTTCAGAAGACAGCAGCAAAAGATCCACTTCACCACAGCATTCTGTGATGCTCTCACACCACCACCAGCACCACCAGCAGCAGCCAATTTCCAGTGCTGCCTCATCAGGAATGAATTTCCAATGGAGTAATCAGTCAAATGCAGGAATAGCCATGGCTCTCAATCCTGCACATGAACAAGTGTTTGTCTCCCCTTATGGCCTTAACTCATATGGGTTTAAGGTGCAGGGCCAAAGTCTGCACAGAAGTCCTCTCCATGAGTCTTCTTACCTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCAGCCCTCCCAGCACTATTCCCATGCATGA


Promoter Sequence:
>Vu_22522::LG5:56088422-56090422(-)
AGTTGATGTCTTATTATAAACAGTTGATTATTAGTTTAAGATAGGTTATACACTTTTGTTTAAGTCTAAAATAGTTTATAATCCAATCTAGGAGTGTTAAAAATTGGTAAAAGTTGTTAGAAGAGGTAATTGGTGGTCTAGAAGTGCTAATTTTGCAGTTTTACTGCTGCAGAATTATGCAGTTTGGCTGGGCGAGCAGAATTGGCTAGTTGGATGAGTGTAGGGGAGTTTTGCAATGAGTTTTAGAGGTTGGGCGAGCCAGCTCACTTAGTTTGTTGTTTGGCTCTCGCTAGGCGAATGTTTGGGGTTTTTGGCAGAGAGTTGCAGTGATTAAGCGAGCCAACTTGCTTAGCTTGGGAAGCTTGTTGTTTCGCCTCTAGCTGGGTAAACATAGTCTATTACTGGACGAGTGGGTCTGCTTTCTTAAGTGTTTTTGAACACTTTTACCTATGTGTATGGTTTGAAAAGATATATTGGTTTGATGTATGATCTATGGAAATGTTTAGAAGTTATGTTTTGAATGGAATGAGATGCATAAGAGTCCTAAGGAGGATTCTTAAGGGTTGTATAAAATGTTTAATATAAATGTAAGAATCTGATATGGGGGTTATCCTGAAATTCTAATGATCATCCATGCTTAATTAGAGAATAATGAGTCATGTCGTAAGAGGAGCAGGAGGTCCTAGCCTGAGAGCCTTTCTTCATAGTGGCAAATAGCGTTTTAAAGGACTAACTTATTGTGGTAGCTTTGAGTGGGTCAGCTGTTCCACCACACAAGTGCAGGACCTTTCCATGGCTCGACATTTATACTATATTGTAATAGGGTTTGGCCAAGTCTGAGTCATTGGTGTGAATGGGAAAGATGCTTTACTATGTGTTAATTGAATTGTATGGTGAAATTTTATTTTTACCATGTAAAATTGTTTTATCATTAACTTACCATTGTTTTTGTTTTTTTTGTTAGTGTGTTTTCTCGTTTAGGATTATCACCTTAATTGGTGTGAACTTAAAGATGACATCTTTTCACTTGTTTCATTGTGAGGTTGAGGGTGAAACAAAAACATAAATAATTTCTTTTGTTCTCTAGGTATAGGTTTTTCTTTATTAGAAATATGTAGTTGTTAAGTTATCATCTATGTAACGTTTTATTTTAGTAGTTTTATATTATTAATATGTGATGTTACATTTAAAACGTTAAAAAAATTTCATACAATACTAAAATTTGAGGCATAAACAAAATTAAATTTTATACTAAGTTTTGAGAATAAAAGTATATTTAATCTTTATTTATAAAATGTTATTGTTATTTGTTGTTATAGAAAAATATATAATAATATAATTTATTTAAATATGTAATAACTACAGAAAAAAATAGAAAAAGAATAAAAGAATTTTTAAAAAATTTTATTTACTAATTTATTTATTATTTTTCTTAAACAAAAGATAAAATAAAATGGAAAGAGGAGTATAAAATTTATTTTGAAACAATAAATGATATTAGTCGAGAGTTATAATGGCAATAAATTATAATTATACCAGTAGTAAATGAAAAAAATTCATAAGTAGCAAATAGTAATTAGGATCATTAATGATTATAATTAAGATCATTAATGATATTGCTTAGCAATAAATTCCTAGACCATTTATTTACTCCATTTCATTTATTATGAATAAAAAAACCTTGAGGCGGTTACACGAAATTAAACTGAAAACTCCATAAACGAAGACTAGGTATGAAGGAAGCATTGATCTGAAAGTGGGGTGTTACATTGACCATTGCAACGCAACATAATAGCCAAGCTTGATGAACTAAGAATACTGGTTTCACGTAGAACGTCAACGAAAAAGACAAAAAGAAATTAAACGACTGAATAAAATAATAATTAGGAGTAAATGATGCATTAATAAATCATTAATTAGTTATTATTATTTTTAATAAAAAGTGCACAGAAGGAGGAGTGTGTGCGTATTATAATAAGAGGGAAACTTTTTATATGGTT


Gene Sequence:
>Vu_22522(-)
GCAGGATCCACACACACACATAGCATCCAATCACAGCTCACCACCTTCATCCACTGCTTTTTGGTTCTCTCTCCCTTGGTGCTTCCCCTTTAAGGAGAGAGTGGCAAAGTTTGTTTTAAGATTCATTCTTTCAAGCTTCATCACTTTGCTTTTTCAGCTTCCATATAATTTCCATCTTTTCCATTTGGGGGGCTCCTATTCCTTTTTTGTGCCAAGTTTCTTTTCAGTATTTCTTTCTCTTTTCTTTCTCTTTTCTTTCTTGCTCAGCATCAAGAAAAAAGATTTAAAGAAAAAAAAAACAGTTTTGTTTTGTGTTTTTTTCTAAACAAGCTTTTCTTCTTTTTCTTCCACCACCCTCTTCCCTCATAAATTCGGAGTCTTTCTGCTCTTTCCTAATTGGGTCTGTACATTCATTGTCTTAGGCTGCACCCCTTTTGCTGTTCCTTGGTTTCTAATTGCTTTCCCAATTGGGGTAAACTCAAATTGAAGTGCAGAAAGACTTGTCAGATTTTTCCTCTCTGAAAGTTGTCATTTTTATTTTGTTGGGATTTGTTTTTTTGGCTGGAATTTTGCTGTGTCTTAGTTCCAGTTTTTGGTATCTGGGAGGAACTTCATTGGGTTTATAGATCTCATCATAAGTGGTTCTAGGGTTTTCCTTTGGACCAATTAGGTAATAATCTTGAACCTCAATTTGGAGCATTCCCTTTGATTTTTTTACAAAGTGGGTCTTTTATAGATTCCTCAAGAGCATGCCTCCTTTCCTACACATAAAAAAAAGGCTATTCTGATTCCTTTAAAAAAAAAATGCTTGTTGATTTATCCTTCATAGTGTTGTGGTAAAACCTCCACCTCTGCTTCTCACATATCTCCCTCTCTCTCCTGCTCTGAATCAACCCTGCTTCCCATAAAGTCGTGCAATCTTTCGAGTAAAATCCACAGAAACACACACAGACACAGCAAACCAAAGAACCATCTTGAATTGGCTCAAACCTTGTTCTTGATGCTCCCATAGTTTTTGTGTTCTTGTGTTGTGACTTTGGTGTGATGAAGTGGGAAATGGAGATCCTCCCTCCTGCCTCGCCTTACATGTACAACTCCAATTGGCTTTTGGATGATAACAGGACCAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGCACAAGGTGGCTGAGATGATACCAGGAAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGAATTGGAAGCAGATGTCTGTAACATAGAAGCTGGCTTGATCCCGATTCCAGGCTACAGTACCACCACCTCACCCTTCACCCTAGACTGGGTGAACACTCCTGGCTACGATGGCTTCAAAGGCCTCACTGCTAAGAGATCCTCCTCTGGCAGACCTCCTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAAGTGAGTCATCTTCTTGCTTATTCTTTATTACTGTTGCTTTTAAATTTTTATTTCCATGTATGTCTGAGGAATACCACATGAAGGATATTACTATTTAGTTATTGAAAATGGGAATTAGTCTGAAAAGAAAAATGGATGTGGTTAAGTTTATGATGTACTTTGTATGTGAACCTAGGAGTAGGAGCTATGATGCTGTCTAGTTTGTTATCAAGAGTTGGATATTTCTTATTTGTGTTAAGGTCTTTATAGTAGCCTTCATGAGGCAAGCTTTGTGGTTGGTTGGTTAGGTTAAATAAATAAATTCATGTGCTATTTATATCAGATGTTGGGTGTGTCAACTGGGAACTTGATTATGCTTTGTGAAAATTCTCCACAGGTTGTTTCTACTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATTTCACGCAATTTTGTGATCACTCGAACGCCAACTCAAGTTGCCAGTCACGCTCAGAAGTACTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGACATCACAACAGTGAATCTCACAGAAACCACCAGAACTTCTTCAGAAGACAGCAGCAAAAGATCCACTTCACCACAGCATTCTGTGATGCTCTCACACCACCACCAGCACCACCAGCAGCAGCCAATTTCCAGTGCTGCCTCATCAGGAATGAATTTCCAATGGAGTAATCAGTCAAATGCAGGAATAGCCATGGCTCTCAATCCTGCACATGAACAAGTGTTTGTCTCCCCTTATGGCCTTAACTCATATGGGTTTAAGGTGCAGGGCCAAAGTCTGCACAGAAGTCCTCTCCATGAGTCTTCTTACCTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCAGCCCTCCCAGCACTATTCCCATGCATGATGTGGTGGTGGTGGTTGTGTTGAATTATTTATCCCTAGAAACAGTGTCTTTTGCTCAGTGCACTCACTAGTACAGTGTCTGTGCCTTTTGCCATGTTTTTATGTGAATACCTTACATTAGACTATTAGTTAGTTATTGCCTTCTTGGTATATGAACTTGAAGGAAGGTGTTGAAATTTGTTTCTTCATCAACCTTACATTTGTGAAAGGTGAGAGCTGCTAGGCAAAAAGAAGTACCAAACTTTGGTTTTTCGTTTAAGAATATTGGATTTGAAGCTAAGTTTAGAATGAAATGTTAACTTTAAAGAGAAAGGGCCCCTTGTACTATGGCAAGCCATTTATGTAAGAGAAGGGTAGTACTATTGATGCAAAAATTGTATTT