Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22670 LG5 57831931 57832725 PREDICTED: agamous-like MADS-box protein AGL80
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, positive regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, cis-regulatory region sequence-specific DNA binding, protein dimerization activity, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific
SNP Position Effect Amino acid change
A/T 57831964 intron_variant
T/A 57832049 intron_variant
C/T 57832053 intron_variant
G/A 57832459 synonymous_variant p.Cys44Cys
A/T 57832565 intron_variant
C/T 57832643 splice_region_variant&intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22670.1
MTRAKIELAYITDPAKRKATFKKRKNGLMKKISEITVLCGIDACAVVYSPDLPNKPEVWPSESEARSVISKFNGVPEAEKRKKMFCQESFLRQRIDKGKEQLKKLKNENRKREINLLMCEYLTHGGNNLDSNNMSYLKDFSFFTDQNLDEIRNKITMLQTQEETPETMDQGEQAQWLA*


CDS Sequence:
>Vu_22670.1
ATGACTAGAGCCAAGATCGAACTTGCTTACATAACAGATCCTGCAAAGAGGAAAGCAACTTTCAAGAAAAGGAAAAATGGTTTGATGAAAAAGATCAGTGAAATCACTGTCCTTTGTGGGATTGATGCATGTGCTGTAGTGTATAGTCCTGATCTGCCTAACAAGCCAGAGGTTTGGCCATCTGAATCAGAAGCCAGAAGTGTGATTTCCAAGTTCAATGGTGTGCCTGAGGCTGAGAAAAGAAAGAAAATGTTCTGCCAAGAAAGCTTTTTAAGACAGAGAATTGACAAAGGCAAAGAGCAGCTGAAGAAACTGAAGAATGAAAATAGGAAGAGGGAGATTAACCTTCTCATGTGTGAATACCTCACTCATGGAGGCAACAACCTTGACAGTAACAACATGAGTTATCTCAAGGACTTTTCATTCTTCACTGATCAAAATTTGGATGAAATTAGAAACAAAATCACTATGCTCCAAACCCAAGAGGAGACACCAGAAACCATGGATCAAGGAGAGCAGGCACAGTGGTTGGCTTAA


Promoter Sequence:
>Vu_22670::LG5:57832725-57834725(-)
CGCGTTCTCGGAGAGGATTAAAAATCGAAAGAGAGCAGAGTAAGGAATGACGACCGACCCTCAGACCAATTCAATTGAAACAATAAGGTTTTCTGTGATTCTCAAATATGAGAGAGAAAGAGGGAATGAAGAAAAGTGTCGTCAACGTCAATGATATTCCTAGTTGCACCATTACTTCGACACTGAGGCTTTGCTCACTTGAATGGATTTGGGGAGGGTGATTGAGGGGATTTGAGAGGATTTGAAGGTAAATTTTATTGTTGTTTATTTGAGTGAATTTGGAGGTAAGTGATTTGAAAGTAAATTTTTTTAATCTGTCACATCAATCAAATCATACACTAATTCTCACAAATTTTACTATTTTACTTCCAAATTTACTCTCACTTACCTCCAAATTCACTTAAATAAACAATAAAAAAAATTTACCTTCAAATTCTCTCAAATCCATTCAATCACTTTCTTTCAAATCTATTCAAGTGAACAAACATCACATAAGGAAAAGAAGAAAATATTCTTAGTGGTATTGGTAACCTCTTTGTGCTCTGATGTGGTGAGTTCGATCAATGGCGATAAAATCCTGAGTTGTTATGGTGATGAGTTGTACATGGGAAAATAGAATACACCGAGTTTAACGTAACTCAGGTCAAACTTAATTAAATAAGTTGACTCAAGTCTAGACAAATAATGTATCAAAACAAAACTTCTTTTTATTTAAAAAGTAAAATTAAAATCATTTTTCATACAAAACTTCTTTAAATTTTAAAATAGCATGAATTTGCATATGATTTTCTTAAAATAGCATGAATTTGCATATGATTTTCTTAAAATAGCATGAATTTTAAAATAGCATGAATTTGCATATGATTTTCTTAAAATAGCATGAATTTTAAAATAGCATGAATTTGCATATGATTTTCTTAAAATAGCATAATGATTTTTAAAGAGATGTATTTCTTCTATTATTTTTATTTTATAAATATTTATAATAATATCAATTCAATATGCTTTTATGACTTAAAGGTATTTACAAATGATTCATTTTTATATTTTTTTTCAAACGGACCAAAATTCAAATCTATATCCCTCAATGGATACAATTTTGACCTTTACAAACCTACTCAATATTTCAAATTTTTTGTTTATCAATCTAACTTTTAAAACTAAAAGTTTTTGACTTCGTATTAGAAAAATATTTAAATGTTAGTTTCTAAAGCTGTTATCACCTTTTTCCCTAATAGGATTAATGATTTTTTTTCAAACAAATAAGTACTATTTAATAAATAATAATACAATTATTAATTGTTATTCATTCAATTTTATACTTATGCAGGAATAAATTTAATACAAAATTAATTATTACCTGTTAATAATTAGAAAGTAAGCATAGTTAAGAACATATCTCAAGAGATAAAAGAATAAAGATAAAATTAATTTGAATATTAAACATGAAAAAGTTATATTTTTCATTTATCATGCACATATGACAAGTCATTTAAAAAATATTTTTATTGTAAAACCCTTCTAACAGTTCAATGCTGATGAACTTATTTATTATTTTTAGAGAAAAAAATTACATATAAAAAAAAGCAACTCGGATGGACATGGTGATAAGGAATATTCATAAGAACATTTGGTAAATAAAAATAAAATAAATATATACTTTTATATAAATTAAAATTAACTCATGTATATATTCATTTATATTTTTAAAATTTGTGAAAGAATTAATGTTATCTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTATATATATATATATATATATATATATTATCTATTTAATAAAAAATTGTCCAAAAAATTATAGTATTTAATTACATCCTAATTTCTTTTATATAAACAACATATCATGAATCATGAGAAAGACACATCAAAATAGCATTTTTAGAACCTAAATCTTGCATTCCTCTCTTGTTTGTTTTCTGATCACAGTC


Gene Sequence:
>Vu_22670(-)
ATGACTAGAGCCAAGATCGAACTTGCTTACATAACAGATCCTGCAAAGAGGAAAGCAACTTTCAAGAAAAGGAAAAATGGTCGAAATCTTTTCTCTTTAAATAATTTTAACTATGCTTCATGCACACGTACCGTTTGATAAAATTCCAATTTGAGCATTTTGCACCTTCTCTCTGTTCTTATATGGTTCTTGGTATATATGTTTCTGAACAGGTTTGATGAAAAAGATCAGTGAAATCACTGTCCTTTGTGGGATTGATGCATGTGCTGTAGTGTATAGTCCTGATCTGCCTAACAAGCCAGAGGTTTGGCCATCTGAATCAGAAGCCAGAAGTGTGATTTCCAAGTTCAATGGTGTGCCTGAGGCTGAGAAAAGAAAGAAAATGTTCTGCCAAGAAAGCTTTTTAAGACAGAGAATTGACAAAGGCAAAGAGCAGCTGAAGAAACTGAAGAATGAAAATAGGAAGAGGGAGATTAACCTTCTCATGTGTGAATACCTCACTCATGGAGGCAACAACCTTGACAGTAACAACATGAGTTATCTCAAGGACTTTTCATTCTTCACTGATCAAAATTTGGATGAAATTAGAAACAAAATCACTATGCTCCAAACCCAAGAGGAGACACCAGAAACCATGGATCAAGGAGAGCAGGCACAGGTTCATGTGCCAAAGACCAATTTTTCTAGAAAAATAATAAAAAAACTAAATTAGTCTGTGGATATATAACATCAATGCTGGTGATGAGAATGAGTGTTAACATTGGAAGATGTTAATGATTATAGTGGTTGGCTTAA