Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22837 LG5 59571439 59572221 PREDICTED: nuclear transcription factor Y subunit C-9-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, regulation of seed germination, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, positive regulation of photomorphogenesis, abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, regulation of seed germination, gibberellic acid mediated signaling pathway, positive regulation of photomorphogenesis, positive regulation of photomorphogenesis, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, extracellular region, nucleus, nucleus, cytoplasm, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, sequence-specific DNA binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein heterodimerization activity, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, DNA-binding transcription activator activity, RNA polymerase II-specific, protein binding, protein binding
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
T/C 59571567 synonymous_variant p.Ser43Ser
T/G 59571854 stop_gained p.Leu139*
C/G 59571862 missense_variant p.Arg142Gly
G/T 59571869 missense_variant p.Trp144Leu
G/A 59571870 stop_gained p.Trp144*
A/G 59571885 synonymous_variant p.Glu149Glu
A/T 59571992 missense_variant p.Glu185Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22837.1
MDHQGHGQNPSMGVVGSGAQLTYGSNPYQQGQITGPPGSVVASVGTIQSTGQPAGAQLGQHQLAYQHIHQQQQHQLQQQLQQFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALPYCYMPPQHAPQVGTGGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQPSPEH*


CDS Sequence:
>Vu_22837.1
ATGGATCATCAAGGGCATGGCCAGAACCCATCTATGGGGGTTGTTGGTAGTGGAGCTCAATTAACATATGGTTCTAACCCATATCAGCAAGGCCAAATAACTGGGCCACCAGGGTCGGTTGTGGCATCTGTTGGGACCATTCAGTCTACTGGTCAACCTGCTGGAGCACAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAACATCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAATCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAAATTATGAAGGCTGATGAGGATGTTAGAATGATTTCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAAAACAAAAGGAGAACACTTCAAAAAAATGACATTGCTGCAGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTACCCCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGAACAATGCCTGTTGGAGGGCCCGCTGATGCACTTCCATACTGCTACATGCCTCCTCAGCATGCTCCTCAAGTTGGAACCGGTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCCCAGCCTCCAGACCAACGTCAGCCATCCCCAGAACATTAG


Promoter Sequence:
>Vu_22837::LG5:59569439-59571439(+)
AATATTTTTATATTACTCTATTGTAATAGAAATAACACATGATAAAATAATGGTAATAATAATAATAATCTTATTTCTCACCTATTTTACTATTTTTCATTTAATCCAAATAATCTTAAATGTTTAGAATTCTTCAATTAAAGATCACCTTTTTCTCTCAAATATAATTCTACTGCTATTAACTGTAAAAACCACTAGTATCCATTTAGTACTGTAGTTTCATGTATAAAAATTTAATTATGAAAAAAGATAATTTTAATTTTTAAATAAGTATTATTTTAAATTTAGATATCTATGACACCTCCAAAATTTATCATCACATAAAATCTTAATAAAATAAAAAAGATAATTCTAATTTAAATATAGCAATGTTTTTTTCACTAGTTTTTTTCTTAAATATCCAAATATAAGAAAATAAGACAATAATTTGTTTACAAAAACATAAATTAATTTAAATTTAATAATTAACATCTTATACACTTTAGAGAGTTAATTTCTTGGACATAAAACTTTATTTTATGTCTTCATACAGCCTATTAAAATTCTAAAAAATATAATAAATTCAATAGTATTAGTTAATTTTTTAACAATTAAAAATGAAAAAAAAAAATTTTGATATGACCGCGTGAACTTAGGCAAATAAGGGGAAGATCTAAATCTATGTAAGTTTGCGAAGAAGAATGTCATGTTGAGAGCGCGGAATATGAAAAGGGTAAATTGGTCATTGTGAGAAAATTGAAAACACTTGGGGCAATATAAGAGTTAGGTCCGACAATGTTAGTCAGAATCGATCACACAGCTTTTGTTTTCGCACTTCGCTGTCTGAGGTTCGTTCCAAAAGAAACATCGATAATCCTCATGACCAGTTCTGCTATGCTTTTTTTTGTTTTCGTATTTTTATTCTGAAACCCTAAATTTTTTTTGTCTGCTATGAACTTTGGGATCTTTCACACTTCAAAAAACTGTTTCTTGTGCTCCATCCACCACAATTCTTATACCATAGATCTTTGATTCGAACACAATTTCTGATCATTTCTCTGTTTTTTCTTTTATCGCCTTTTAATTCCTTTTCAGGTTCTGGATTATAAGTGTTTGGGAAGCGCAACATCATCTCTCGGGGAAGGTATCAAGTAACAACTCTTGCTACAAAGTTACATATGTCTATGTGATTTTGTTCATGATTCTGCATTTGTTTAGGTTTACTGTAGCGTGGTCTTCATGCTTTTGTCTATCAGTTATTATATTTTTGGATATTTTTCATTGGTTACTCATAATTCAATTTGCTGTTGTTTTATTCCATTTTGTTGAGGTTCCTTTGGTTGATTTTCCTGACGCCCCGGACACGGATTTTCGCGATTGTGAAAACTGATTGTCTTGGACTGAAGAATTCTCTTTGATCTTAATTGTTAGAAAATATGAAAAATAAAAGCTGTTTTTTTTATGATTCCGTGCTAAAATCAGCTCAGAATTAAAATCTTCGGAAATCTTGGATTGCATGTTATTTTGAACTGTTAATTTCTTTATAGATTTCTTTCTTTAGTTGAGTTGGGTGGTTGTCTTATATTTTTGGAGGCATCCGATACTTCTTTAAATGGGATCGCATTTTGGTGAAGATATTTTTGGTGATCATATATATTTGGTTTACCGTGCTTTCTGAACTGTGTCACACATATTACATGTGTGTTTCTATTAGCTGCCAAAGTTGCCTACTTTAATACTTTGTGTGCAATATTCACCTGCTTTAATGCTTTATGCAAATAGTTGCCTGCTTTAGTGTTTAGCGCAAATCAAGAAAAATATTTACCTACTTTTTTTTTCGCGAAGTTCATGTTGTTTTCCATCACATGATTGAGGGGCACTGCATTAGAGACCATTTTTTCATCCCTTCCACGTTTAAGTTGAATATTTAATCATAGTAAAACATACTAGTATGATAGAGAAACTTGTCTTAATTGAGAAGTGAAAACACTCAGGATAGTTTTATTTTTCCTGAAACAGAA


Gene Sequence:
>Vu_22837(+)
ATGGATCATCAAGGGCATGGCCAGAACCCATCTATGGGGGTTGTTGGTAGTGGAGCTCAATTAACATATGGTTCTAACCCATATCAGCAAGGCCAAATAACTGGGCCACCAGGGTCGGTTGTGGCATCTGTTGGGACCATTCAGTCTACTGGTCAACCTGCTGGAGCACAGCTTGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAACAACAACATCAGCTTCAGCAACAGCTCCAACAATTTTGGTCAAATCAGTACCAAGAAATTGAGAAGGTTACTGATTTCAAGAACCACAGTCTTCCCCTGGCAAGGATCAAGAAAATTATGAAGGCTGATGAGGATGTTAGAATGATTTCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAAAACAAAAGGAGAACACTTCAAAAAAATGACATTGCTGCAGCAATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTACCCCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGAACAATGCCTGTTGGAGGGCCCGCTGATGCACTTCCATACTGCTACATGCCTCCTCAGCATGCTCCTCAAGTTGGAACCGGTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAGTCTCACCCCTACATGGCACCACAAATGTGGCCCCAGCCTCCAGACCAACGTCAGCCATCCCCAGAACATTAG