Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22929 LG5 60515038 60517429 PREDICTED: light-inducible protein CPRF2 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to glucose stimulus, cellular response to starvation, cellular response to abscisic acid stimulus, cellular response to glucose stimulus, cellular response to glucose stimulus, cellular response to starvation, cellular response to abscisic acid stimulus, cellular response to starvation, cellular response to glucose stimulus, entrainment of circadian clock, cellular response to starvation, entrainment of circadian clock, cellular response to abscisic acid stimulus, cellular response to glucose stimulus, cellular response to glucose stimulus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein heterodimerization activity, protein binding, protein binding, protein heterodimerization activity, identical protein binding, protein heterodimerization activity, protein binding, protein self-association, protein binding, protein heterodimerization activity, protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein heterodimerization activity, protein heterodimerization activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein heterodimerization activity, kinase binding, protein heterodimerization activity, protein heterodimerization activity, protein heterodimerization activity, protein binding, protein binding, protein binding, protein heterodimerization activity, identical protein binding, protein binding
SNP Position Effect Amino acid change
A/C 60515116 5_prime_UTR_variant
G/C 60515303 missense_variant p.Asp63His
A/G 60515304 missense_variant p.Asp63Gly
T/C 60515350 synonymous_variant p.Asp78Asp
A/T 60515357 missense_variant p.Thr81Ser
A/G 60515437 upstream_gene_variant
G/C 60515440 upstream_gene_variant
C/A 60515467 upstream_gene_variant
C/A 60515557 upstream_gene_variant
T/A 60515576 upstream_gene_variant
C/T 60515577 upstream_gene_variant
C/T 60515597 upstream_gene_variant
C/A 60515601 upstream_gene_variant
C/T 60515609 upstream_gene_variant
C/T 60515639 upstream_gene_variant
A/G 60515670 upstream_gene_variant
A/C 60515726 upstream_gene_variant
C/T 60515753 upstream_gene_variant
C/G 60515808 upstream_gene_variant
T/G 60515887 upstream_gene_variant
G/A 60515902 upstream_gene_variant
T/C 60515935 splice_region_variant&intron_variant
A/T 60515950 stop_gained p.Lys103*
T/C 60515955 synonymous_variant p.Ser104Ser
T/A 60515997 synonymous_variant p.Ala118Ala
T/C 60516034 upstream_gene_variant
G/T 60516069 upstream_gene_variant
T/C 60516080 upstream_gene_variant
G/C 60516137 synonymous_variant p.Val129Val
C/G 60516186 missense_variant p.Pro146Ala
A/G 60516206 synonymous_variant p.Pro152Pro
A/G 60516298 missense_variant p.Lys183Arg
A/G 60516372 upstream_gene_variant
C/G 60516435 upstream_gene_variant
C/T 60516463 upstream_gene_variant
T/A 60516465 splice_region_variant&intron_variant
C/T 60516497 synonymous_variant p.Ala195Ala
G/A 60516656 missense_variant p.Arg226His
C/T 60516657 synonymous_variant p.Arg226Arg
G/A 60516664 missense_variant p.Asp229Asn
T/G 60516812 upstream_gene_variant
T/C 60516835 synonymous_variant p.Ala258Ala
A/G 60516883 synonymous_variant p.Ala274Ala
A/G 60516925 synonymous_variant p.Glu288Glu
T/A 60516949 synonymous_variant p.Gly296Gly
C/G 60517015 missense_variant p.Phe318Leu
T/G 60517217 3_prime_UTR_variant
T/C 60517226 3_prime_UTR_variant
C/G 60517349 3_prime_UTR_variant
C/G 60517375 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22929.1
MERVLSVDEISEQYWVAAKKESCKSKSKMNRSESEWAFQQFLQEAVSPSSSSSSDVKPKKDPDINMNIPVTLNVDSHDYQTILKTKLNLACAAVALTRGSLVKSQNPTTFPDSGSQAAVPSEVGTLKDVEAATGISFSSPSLQKKPAVAVRPTLSASSREQSDDEEAEEEINMTGKMNTTDAKRVRRESARRSRRRKQAHLSELETQVSQLRGENSSLLKRLTDVNHRYNSAAVDNRVLKADVETLRAKVKMAEETVKRISGLNPMFHAMTEMSSMEIAMFDESRSETSGGGAVPVQEDTNHKLSEASSKNGFGGISSVKSVQQKVVGWNKSGGGNSLHRVASLEHLQKRIRGDEDSRGEQ*

>Vu_22929.2
MERVLSVDEISEQYWVAAKKESCKSKSKMNRSESEWAFQQFLQEAVSPSSSSSSDVKPKKDPDINMNIPVTLNVDSHDYQTILKTKLNLACAAVALTRGSLVKSQNPTTFPDSGSQAAVPSEVGTLKDVEAATGISFSSPSLQKKPAVAVRPTLSASSREQSDDEEAEEEINMTGKMNTTDAKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRGENSSLLKRLTDVNHRYNSAAVDNRVLKADVETLRAKVKMAEETVKRISGLNPMFHAMTEMSSMEIAMFDESRSETSGGGAVPVQEDTNHKLSEASSKNGFGGISSVKSVQQKVVGWNKSGGGNSLHRVASLEHLQKRIRGDEDSRGEQ*


CDS Sequence:
>Vu_22929.1
ATGGAAAGGGTGTTGTCAGTGGATGAAATATCGGAGCAATATTGGGTGGCGGCGAAGAAGGAATCATGCAAGTCAAAGTCAAAGATGAACCGTAGTGAATCGGAATGGGCCTTTCAGCAGTTTCTTCAGGAAGCAGTTTCTCCTTCTTCATCTTCTTCCTCCGACGTTAAACCCAAAAAGGATCCCGACATCAACATGAACATCCCTGTAACTCTAAATGTCGATTCCCACGATTACCAAACCATTCTTAAAACCAAGCTTAACCTCGCTTGTGCTGCTGTCGCTTTGACTCGGGGATCTTTGGTCAAATCTCAAAATCCGACCACTTTCCCTGACAGTGGATCACAGGCAGCTGTTCCTTCTGAAGTTGGAACCTTGAAAGATGTGGAAGCAGCAACTGGGATTTCATTCTCATCACCTTCCCTGCAAAAGAAACCTGCTGTTGCAGTGAGGCCAACATTAAGTGCATCATCAAGAGAGCAATCAGATGATGAGGAAGCGGAGGAAGAGATTAACATGACTGGAAAAATGAATACAACTGATGCAAAACGAGTAAGGAGGGAGTCTGCCAGACGCTCAAGGAGAAGAAAGCAGGCTCATTTAAGTGAGCTGGAGACACAGGTCTCCCAATTAAGAGGTGAAAATTCTTCCTTGTTAAAGCGCTTAACTGACGTGAACCACAGATACAACAGTGCTGCAGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACGTTAAGAGCTAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTTCTGGGTTGAATCCAATGTTTCATGCAATGACTGAGATGTCATCAATGGAAATAGCAATGTTTGATGAAAGTCGTTCTGAGACATCAGGTGGTGGTGCTGTTCCTGTGCAAGAAGACACAAATCATAAACTTAGTGAAGCGAGTTCGAAGAATGGATTCGGAGGCATTTCTTCAGTGAAAAGTGTGCAGCAGAAAGTGGTAGGTTGGAACAAAAGTGGGGGAGGAAATTCCCTGCATAGAGTTGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGATGAAGATTCACGTGGAGAGCAATAA

>Vu_22929.2
ATGGAAAGGGTGTTGTCAGTGGATGAAATATCGGAGCAATATTGGGTGGCGGCGAAGAAGGAATCATGCAAGTCAAAGTCAAAGATGAACCGTAGTGAATCGGAATGGGCCTTTCAGCAGTTTCTTCAGGAAGCAGTTTCTCCTTCTTCATCTTCTTCCTCCGACGTTAAACCCAAAAAGGATCCCGACATCAACATGAACATCCCTGTAACTCTAAATGTCGATTCCCACGATTACCAAACCATTCTTAAAACCAAGCTTAACCTCGCTTGTGCTGCTGTCGCTTTGACTCGGGGATCTTTGGTCAAATCTCAAAATCCGACCACTTTCCCTGACAGTGGATCACAGGCAGCTGTTCCTTCTGAAGTTGGAACCTTGAAAGATGTGGAAGCAGCAACTGGGATTTCATTCTCATCACCTTCCCTGCAAAAGAAACCTGCTGTTGCAGTGAGGCCAACATTAAGTGCATCATCAAGAGAGCAATCAGATGATGAGGAAGCGGAGGAAGAGATTAACATGACTGGAAAAATGAATACAACTGATGCAAAACGAGTAAGGAGGATGCTTTCCAATAGGGAGTCTGCCAGACGCTCAAGGAGAAGAAAGCAGGCTCATTTAAGTGAGCTGGAGACACAGGTCTCCCAATTAAGAGGTGAAAATTCTTCCTTGTTAAAGCGCTTAACTGACGTGAACCACAGATACAACAGTGCTGCAGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACGTTAAGAGCTAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTTCTGGGTTGAATCCAATGTTTCATGCAATGACTGAGATGTCATCAATGGAAATAGCAATGTTTGATGAAAGTCGTTCTGAGACATCAGGTGGTGGTGCTGTTCCTGTGCAAGAAGACACAAATCATAAACTTAGTGAAGCGAGTTCGAAGAATGGATTCGGAGGCATTTCTTCAGTGAAAAGTGTGCAGCAGAAAGTGGTAGGTTGGAACAAAAGTGGGGGAGGAAATTCCCTGCATAGAGTTGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGATGAAGATTCACGTGGAGAGCAATAA


Promoter Sequence:
>Vu_22929::LG5:60513038-60515038(+)
AAATAAAATTATATATACGTAAATATTATTATTTGACTTATTTAAGTTTTAAACTTTTTATAAATTTTAGTATTTTTAACTAAAATTTTATTACTTTTTAATACAAGTACTTAAAATTGTTATATTTTTCTTTTGGATGTCTCTAGTTAATTTAATTTATTGTTTGAGAATGTATTGAATAACAAAGATAGCCACTCTCCTCTATATCAACAGTAGTAATGATATTAATAATTTAGATTATGCATATGATTACATGATTGAATGATATGATTATCTTATTAGATTTTAAATTAAAACAACAAAAGTCATTTATAGTTTTACATTAACACTTCAAGATGAGAATCACATTATAAAGATTAAATGACAAATACTTAATTAAAAATAATTAAACAATAAAGACTCAAGTAAAAAAAAATACAAATCAATAGACTAAAAAATTTAGTAAAAATATAATTAAAAATATCTAAATTTTAGAAGGACTTAATACTTAAATTAAATTATATTATTTTTACTATAAAAATTAATACTCAATTCATATTTTGAATCTTAATTTTTTGAAAATAACTTACATGTAAAATCCACCTAGTTAATAAGAAGAAGACTATTAAAAAAAATTGCTTACATTACTATCTTACCTTTAGTTGCATAGTCTTGGGATTACCTTTTTATACACATTTCAATTCGGAATTTGAAATAAGCAGAAGGTGGTATGCTTAGCAATTTGGGTTGGTGTATTATTTAAAGCCCGGCCCAAACAAGACCCAGAAAAGTGGATCTGATTTCGTGCCCAATCATTTCCATATTCCTAAACATTCAAAAAGGATTTTGTCAATGAAAAGTAAATAAATTTCTCTTTCTGTCTGACAGAAATCTACTTTTAACAATTAACCAAAGTTATTTAGGACTAATTAGCACCAAATATTTTTTTTTATTTCAAAAAATAATTACAGGATATTAATAAAAATTGAACTACAAGATAGGAAAAAAAACAGAACATTTTAACTTATGCCCACCATCATAAGAAAAACGTATTGAGAGATAATAACACTTAATGTATTCAAAGTAAAGAAGTCTTGCTATTCTAACTATCCAAAGTTCAACTCAGTGAATTAAACTCTTAAGTAATATTATTATGTGGTTTACTTTATCTGATTTACTATAAATTAATGATACGGATTAAAATGCAAATGATAACATAATGTATATTGATATAACGTAACGTGGTACCTAAAGATAGAGGAAAATTGTTAAAACACTAAAACAATAAAATTGAAAAATATAAATACCATATCAATTGAAATTTTATTCAGTTAATATTTTTTATTACCGAGAAGAAAAGTGTCATAGAAGAAAGAAGAAAGTGGAAATCCAACCTAAGATTACCCGAAAGAGACAGACAGTTGTGTCGTGTCTATCCGCAGTGACTCACTCACACCTCATCTTATGTCAATAAATATTCCTTCTTTCAAAACTCTAATATTTTAAACACGCTTTAGCAACATAAAAATATCTTTTTATTTATTTATTTTATCACAATTTATTTCATTTAAGAAAATTCATTTTTAGGAATATTTTAATCATTAAAAAAAGGCTAATTTTGTATTGATAAAAAAATAGATATAAAATACGTGTAAAAATTTACTGGGTCTGGTTGATAACGTCACAATCATTCCAGTTATTTTATTACGAGGATTGTTAGAAGAAGAAAAACAAGAAAACAGCAAGAATTTTAGTTTTAAAAATAAGAAAAGTTAACGACGAGATTATGGATTGGTGCCAAAAGTAGAAACTAGGAACAAGTTGGTGGGCGTTGAAAAGGAAGAAGATATGTATTGGATTATGATGCTGAAATGAAGAGCAACCAACCCTAATGGATGAGGGTGCCATGCCACCTCACAAATTCATTTTTTTTTTCTATTATTATTATAATAATTATTATTATTGTTATTGAATTCCAACAGACATGGATATTAAATAACAAGAAAACGTGAGGTTATTCG


Gene Sequence:
>Vu_22929(+)
GTGTGGATGAGAAGCATTTTGTGTTATGATAGGTCCATTGGTAGAATGATGTGATTACTGGAATTGAAAGTTTGAGAGAATGGAAAGGGTGTTGTCAGTGGATGAAATATCGGAGCAATATTGGGTGGCGGCGAAGAAGGAATCATGCAAGTCAAAGTCAAAGATGAACCGTAGTGAATCGGAATGGGCCTTTCAGCAGTTTCTTCAGGAAGCAGTTTCTCCTTCTTCATCTTCTTCCTCCGACGTTAAACCCAAAAAGGATCCCGACATCAACATGAACATCCCTGTAACTCTAAATGTCGATTCCCACGATTACCAAACCATTCTTAAAACCAAGCTTAACCTCGCTTGTGCTGCTGTCGCTTTGACTCGGGTATCTTACCTTTTTTTGCTTTCTTCAATGTTTTCTATTTTTCACAATTTCATCCGCAGATTACCAATAACAGTAAATGTTTTGTCGGATAGCTTCGTGTTCTTACCATGTAAAACATCAGTGTTGAATTAGTTTTGCTAAATTTTCGTCTGCTGTTAATGTTTATCTGTGTTCAATCTTTTAAAGCTAGCTTTTTTTCATGGATATGATAGCATGGTATTCCAAAATCGATATGTACTCACGGGATGTAACTTTTACAAATCAAACTTTGAACCTGTGGTTAACTTCATTGATTAATTAACCATTCTTTCTCCCAAATTGAATTGTTGCATCAATTCCATGCTTTTCGTATGGTCTTAAATGTTGTGGTTTCATTTATGTAATGCCTTCACTCTAGCAACCTTATATTTTGTACTGTTTTTCTGTTTCTCAGAGTAATTCCGTATTAATCATCTATTTCTGTCACCTCTTTGTCGTTGGAAATTGAATCGGTATCTCATGTTTTTTTCTTCTGCTGCTTGCAATAGGGATCTTTGGTCAAATCTCAAAATCCGACCACTTTCCCTGACAGTGGATCACAGGCAGCTGTTCCTTCTGAAGTTGGAACCTTGAAAGGTTTGAATTAATGTATAATTTTGGATGCATTTATGATTTTTTTGCACGTGTGAATGAGAGCATGGAAGGTCCTTTGGGAAATGATCGTTCTAAATCACAAAATACAGATGTGGAAGCAGCAACTGGGATTTCATTCTCATCACCTTCCCTGCAAAAGAAACCTGCTGTTGCAGTGAGGCCAACATTAAGTGCATCATCAAGAGAGCAATCAGATGATGAGGAAGCGGAGGAAGAGATTAACATGACTGGAAAAATGAATACAACTGATGCAAAACGAGTAAGGAGGTAACAGACAACAGTCTCGTAATTGACTATATATGTTTAGCATAGAAAACGTTAATGCTTCAGGTCTGAAATGTTAGTTTCTTCAAAGGGAAAAATGTACTTATTGAATATGGAATTTATTGTACCTTGTTTGATTTAAACTCTAACAAAATCGTGTTTTAGGATGCTTTCCAATAGGGAGTCTGCCAGACGCTCAAGGAGAAGAAAGCAGGCTCATTTAAGTGAGCTGGAGACACAGGTGTGCATGTTTCTGTAATAATTTCCTCAAAGAGTTATGTACATTCTGACCTTATATTGTATCTCAGGTCTCCCAATTAAGAGGTGAAAATTCTTCCTTGTTAAAGCGCTTAACTGACGTGAACCACAGATACAACAGTGCTGCAGTTGACAACAGAGTATTGAAAGCTGATGTTGAAACGTTAAGAGCTAAGGTAAATCCTTGCTGCAATGATTTTCAAATCACTTTTATATGATTTAAAAAATAGAGTTTAAGGGTGATGATTTGCTTTGTAGGTGAAGATGGCTGAAGAGACAGTGAAAAGAATTTCTGGGTTGAATCCAATGTTTCATGCAATGACTGAGATGTCATCAATGGAAATAGCAATGTTTGATGAAAGTCGTTCTGAGACATCAGGTGGTGGTGCTGTTCCTGTGCAAGAAGACACAAATCATAAACTTAGTGAAGCGAGTTCGAAGAATGGATTCGGAGGCATTTCTTCAGTGAAAAGTGTGCAGCAGAAAGTGGTAGGTTGGAACAAAAGTGGGGGAGGAAATTCCCTGCATAGAGTTGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGATGAAGATTCACGTGGAGAGCAATAACATAGCCAAATTACATTATGGTTTCATGAGGAAACTATTCTAGGCTCTTGTTTCTGCTAGTTGTAAGTAACAGTAAATTCTTGTAAATCAATTGGATGCATGTGAAGGATATTGAATACTGTTATTTTCCTATTTTATGTGGACCCCTTCAAATCTTAATACATGCCTAATGTGTAACATATATTACTTAAAGACATCATGGTCACAAGAGTCTCAAGTGTTTGGTAGAGGTTGCCTTATCCAAATTAGTGTTTATCCTTTGCAGTT