Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22980 LG5 61020903 61025130 "PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial "
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response, regulation of transcription, DNA-templated, DNA repair, regulation of transcription, DNA-templated, DNA repair, DNA repair, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   mitochondrion, mitochondrion, chloroplast
Molecular Function   enables   mRNA binding, protein binding, mRNA binding, DNA binding, single-stranded DNA binding
SNP Position Effect Amino acid change
A/T 61020931 5_prime_UTR_variant
A/G 61021005 synonymous_variant p.Lys3Lys
G/C 61021026 synonymous_variant p.Leu10Leu
C/T 61021147 upstream_gene_variant
G/T 61021180 upstream_gene_variant
C/T 61021186 upstream_gene_variant
A/G 61021213 upstream_gene_variant
G/A 61021223 upstream_gene_variant
G/A,T 61021224 upstream_gene_variant
C/T 61021265 upstream_gene_variant
C/T 61021267 upstream_gene_variant
G/T 61021312 upstream_gene_variant
G/T 61021351 upstream_gene_variant
G/A 61021425 missense_variant p.Arg37His
T/C 61021492 upstream_gene_variant
T/C 61021495 upstream_gene_variant
T/G 61021717 upstream_gene_variant
A/G 61021845 synonymous_variant p.Gly109Gly
C/T 61022254 synonymous_variant p.Gly154Gly
G/C 61022268 missense_variant p.Ser159Thr
C/T 61022269 synonymous_variant p.Ser159Ser
T/A 61022336 upstream_gene_variant
T/A 61022505 synonymous_variant p.Thr202Thr
C/T 61022614 upstream_gene_variant
G/C 61022649 upstream_gene_variant
T/C 61022827 upstream_gene_variant
A/G 61022858 upstream_gene_variant
T/A 61022864 upstream_gene_variant
A/G 61022870 upstream_gene_variant
C/T 61022884 upstream_gene_variant
T/C 61022927 upstream_gene_variant
C/T 61022930 upstream_gene_variant
G/A 61022958 upstream_gene_variant
G/A 61022991 upstream_gene_variant
C/T 61023019 upstream_gene_variant
T/C 61023044 upstream_gene_variant
C/T 61023048 upstream_gene_variant
G/A 61023051 upstream_gene_variant
A/G 61023150 upstream_gene_variant
C/T 61023194 upstream_gene_variant
G/A 61023207 upstream_gene_variant
A/G 61023224 upstream_gene_variant
G/A 61023225 upstream_gene_variant
C/A 61023229 upstream_gene_variant
A/G 61023276 upstream_gene_variant
C/T 61023296 upstream_gene_variant
T/A 61023362 upstream_gene_variant
C/T 61023519 upstream_gene_variant
A/T 61023526 upstream_gene_variant
T/C 61023564 upstream_gene_variant
T/G 61023579 upstream_gene_variant
C/T 61023676 upstream_gene_variant
G/C 61023685 upstream_gene_variant
G/C 61023695 upstream_gene_variant
A/C 61023697 upstream_gene_variant
C/A 61023756 upstream_gene_variant
A/T 61023757 upstream_gene_variant
T/G 61023839 intron_variant
A/T 61023849 intron_variant
T/A 61024004 intron_variant
T/C 61024142 intron_variant
T/A 61024198 intron_variant
T/A 61024261 intron_variant
T/A 61024407 intron_variant
G/C 61024438 intron_variant
G/T 61024476 intron_variant
C/T 61024499 intron_variant
C/T 61024689 downstream_gene_variant
T/C 61024865 3_prime_UTR_variant
A/G 61024874 3_prime_UTR_variant
T/C 61024963 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22980.1
MFKLSRVLHLTSTSRHRLLEVLSSRNVEVGDSLWDRRDFTHSAGISTATNNYAAKGYASDRIFAPYTVYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLINMGSQDSSEFFHDPSMLSSNAGQVRKSLSIKPNANSNGYFVSLNVVNNLLNTKDYFSVPVTAAEFAVMKTACSFALPHIMGWDQITNPQSRGTVGIQRKGGSQVLDLEWEK*


CDS Sequence:
>Vu_22980.1
ATGTTCAAACTATCGCGGGTGCTTCATCTGACCTCCACTTCTAGGCATAGGCTGTTGGAAGTGTTGTCGTCTAGGAATGTTGAAGTTGGAGACTCTCTGTGGGATCGGCGTGATTTTACCCATTCAGCCGGCATTTCTACTGCTACAAATAATTATGCTGCTAAAGGGTATGCCTCGGATCGTATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCGGCATTCTCGTTGAGTCCCTGTCTTCCAACTTTTACTAAGTTGGATTCCGGGACTGTTGTAGTTGATCGACGTGGTTCAATCATGATGACTTTCATGCATTCTATTGGAGAACGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCAGCCACTGAAGTTGGTTCTTTGATAAATATGGGCTCTCAAGATTCCTCTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGCCAAGTAAGAAAGAGCTTATCTATTAAGCCCAATGCAAACAGCAATGGATACTTTGTGTCATTGAATGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAGCTGCCGAGTTTGCTGTAATGAAGACTGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCCGCAATCCAGAGGCACAGTGGGCATTCAACGGAAGGGTGGCTCTCAAGTTTTAGATTTGGAATGGGAAAAATGA


Promoter Sequence:
>Vu_22980::LG5:61018903-61020903(+)
AATTGTCAAACAAATTATTTTTAGTTATTTGACATTTTTTTATTTATACTTATTTAAAAATATATATATATATATATATATATATATATATATTATTTACTTATATATTATTTATTATTTTTTTATATTTATTTTGTTACCTCTTAACATTTTATGAGATTTTCTATGTGGATTAAACAAATCTAAAACTATATAAATGAATCATTCGTATATATATATATATATATTCAACGATTATGATAATATATAATGGACATTTTTTTTCAATACATAAATTAAACTAATCTATTAATAAATTAAAGAAGTTTATTACAGTTTAGATAAATCTTACAATACACTCACATACAAGATTGTTCATTCATTAAATAAGTACAAAAAAACATTACACACTTACCGGTTTAATAATATATACTAAATAAATCTGTATATACATTAGTTAGAAAAGTATAATAAAACATATAATGAGTCATTTCATACATTTATGAGATAACTTTAAAAATACATATTGAGTATGTATTTACAATGTTCAAACTATTATGATAACATATATTACATAAATTTGTCCACACTGATCAAATTATTATTATAACATACATTAGATTAGTTTGTCCATGTCCTTGTTACATTAGTTTAACAACATAAGTTAGAGGAGTATCTTCATATATATTATAATACACATTAAAGACTCCCATTAATTATATGATTTGATGAGTCTTATAATATACATTACACAAATTTTTCTATATACTAATAAGACGAGTCTAACAATATTCATTAAACAAATATGTCTTTATACATATTAAGTACTCCTACCATGATCAGCGATCTCTTCCTTAACATTTGGCTTCCACTGTACAGGATTTTTAGTGATTTTAATGAATTCTGACAATAACAAATAATAATAATAAATAAATAAAATAGCATTATTAAAAAAAATACATAATGTCAGGCTATAATTATAAATTATTATACGATAAATTATTAATATTTAAATTAGTTATCATAAAACCGTCCCGATAATTGTTTGTAATTAAATAACTCTATACAACTATTTTACGATGTTAATATATCTACTTGAATTGTTATTTGATAAGTCATAAAACAGAATATATATTTTTTTCCATTTTTTTTGAAAACAAGTTATATGTATGCATCATTAAAAAACAATTTATAGACATGTATTCAAAATTATTTCTTTAGATAATCGTGGTCTCTTCAATAATGATAATATGTGTTATAAACTTTCTAAAATAAAAATAACAACAATAATAATAATAATAAAAATAAAAAAAATGACTGCCATCAGATAAACTAGTACAATTATTACTGTATGTACCAAATAGTTGTTATAAAAATTGGTTTAATCCTTTTGGATATCCCTATTTGTGTAGGGTTGTCTCAAATAGGTCCTCGTATTTTTATTTATTTCAATTAAGTCCCTTCTTTTTTTAAAATTGACTCAATTAGACAAATTATTATCATTATACTGTTACAAGAAATACTATTTTATAAGTATTAATATAATTTTAATTTTCTTTTCAAATAGTACATCAATAAATTAAAACTTAAATTTTTGTTGTTAGAATTCTAACAATTTTTATGAATTTTACAACTATAGCATAATTTTTTAAAATTGATTTAAATGAGCGTTGAACGCATAAAATAAGTAAAAAAAAAAGGAAATTCTATTTCTGATTAAAATACAAAAATAACATTTTTGTTCAAACACGATGGACCTAAGATGGATAAATAAAGATAACAAAAAAATATAATACGAATACAAATTTATAACAATTGACCAATATAAATTAAACATAAACTACTTTTTGGTGGATTATGAAATTATGGCTGCAATTGCTTTGAAAAGCAGTTCAGACTAATAACAAATTCACCATCACTACAAAACCTGGGCTTGGGTTTGGGCCTGGACTGGGCCAGTATTTGTAGATCGGCGTCGTTGAGGGTGAAGGTTACCGGGAGCATTTTCCAATTTCAATTTG


Gene Sequence:
>Vu_22980(+)
GAACGGGGCATGAGCAATAAACCCCACAATCTCGGTTGTTGGTCTCTTTTACTCAGCAAGTGAAGAAGAGGAGAAAAGAGAAAAGCTTTCCAAAATGTTCAAACTATCGCGGGTGCTTCATCTGACCTCCACTTCTAGGTACTCTCTGTTACTACCTTATTACTTCAACTATGTACTCACTTTTCCCTTTCTCTTCAATATCGGCTATTGTCTGTACTTGCTATTCCGTTGTTCTTCACAACTTCGTATCAACACTAAATAACAAACATGAAAGTGGGCCGTCCCAGATAAAAAACAGAAGGTTTTTAAAAAGGGCTTTGGGGAATTTTGTTGTAAATTGCTTAATGTGGTGTGAATCTGGACACGCCATACCCCAGAGGTAGCTTTCGATAATGTCAGATGAATCTTCGTAGTAACATGGTTAGATGGTTTTAAATTTTACAATTTTGTGAAACAGGCATAGGCTGTTGGAAGTGTTGTCGTCTAGGAATGTTGAAGTTGGAGACTCTCTGTGGGATCGGCGTGATTTTACCCATTCAGCCGGCATTTCTACTGCTACAAATAATTATGCTGCTAAAGGCATTGCTTATACTAGTGTTTATAATTTTGCTACTTGTTGAGGCTGCAACTGAACTTACTGGGCTTTACTTTTACTTTTTATTTTTCTGCTATGAACTTCTCTTGCAGGGTATGCCTCGGATCGTATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCGGCATTCTCGTTGAGTCCCTGTCTTCCAACTTTTACTAAGTTGGATGTAAGATTGCTTTTTTCTTTTAATAATTTTATTGAATGGACATTTTGCGTGTGTTATTAACGCATATGTCATAACTATGAACTCCACTTGTCTAGTCCGGGACTGTTGTAGTTGATCGACGTGGTTCAATCATGATGACTTTCATGCATTCTATTGGAGAACGCAAATATGACTGGGAGAAGAGACAGGTAATTGTTTTTGCTATCCATTTGCATGGTTATAGGTTACTGGGGTTTTGACCTGTTTTTTGTTTATCTCTCTCATAGTGATTATCTTTTTGTAGAGATTTGCTCTCTCAGCCACTGAAGTTGGTTCTTTGATAAATATGGGCTCTCAAGATTCCTCTGAATTCTTTCATGACCCTTCAATGTTATCAAGGTTGGTTTCATGGATCTTGGATTAGGTTTTGACGGCCAACTAAATATCATCTTAGTGAACTATAATGGGGTTGAATAAAAAGTACATCATCATCAGCTTTTTAGTCAGATTTTCTTTTTATATTTGTATTAATCAAAGATAAATAGCGATGACTGCTTTGTAATCGTATTATGTTGCAGTAATGCTGGCCAAGTAAGAAAGAGCTTATCTATTAAGCCCAATGCAAACAGCAATGGATACTTTGTGTCATTGAGTAAGATTATTATTTTTTTCATTAGTTTTTTTTCTTCTTTTTTGCTGCTTACTCAGATTGCACAATGCACCATGTGTTCTCTCTGATTGTTGCACCTTCTTTGGCAGATGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAGCTGCCGAGTTTGCTGTAATGAAGACTGCTTGCAGTGTATGCCTTTTATCTGCTTATTTTTTCATAAATTCTCAAATTATATTATAGCTTTTATGAGCTGATGAGTTTCTACTTGCAATAATTCAAAAATAAGAACAGAGATGGTTCCTTTTATATCATGAATTTTCTTTGTAGCGTTGGAAAGGACAAAGAAACTAATTATCCCGTCATCTTGCAAGCCTAACATTCCTAATCAACACCATTCTTGTCTTGAACCTTGGTTAATACTAGAGTTGTCAACTTGACCCATAGCTCATTGACCAGTCCTAGCCCACCCCTAAATAAGTCCCCTTTTGGAGAGTCCCTAATTGAGGGGGCCAAGAAAAAGTCCTAGCCCCCAAAGCCCTCTCTCAAGTGGGTTAGGGTCAGGGCTAAGGTGGGCTTGGCCCCACTACAAGGCGAAATGCAGTCGCTGAGTCGGCCCCGACTAAAATTTGGCCGAATTTGTCTGATTCTGCCTCGACCGAAATTTGGTCAAATTCGGTTGAGTCTACCCTGACCCGAATTCGGACCCACCCTTAATTGTTGGTCGAGAAAAGCCGAATTGGGTCAATGGTCATGACTAGTTGGCTTGGGCCGAAGGTCAAGATTGGTGCAACCTAGGACGAAGGTCGAGACTAGTCGATCCTACTAGTGACGAAGGTGGACTCAAGCCGTTCCGGATTGAAGTTTTAGACGAGTCAAGGTCGGGATGGTCCATGGGTTGAGGATCTACTCTAGTCGGTTTTGTTAAAAGTTGAGACACGCCTATTCAAACTAAAAGTCGAGACAAGTCAGCCTATACTAAAGAAAGTCCATGTGCTCATAGGGCTTTTTGGTCCTATGAATTTTTCAATGGAGGGCCTTTTTTTGATTGTGTGAGTTTTTTTGGTCATAGCCCATGTGGATTAGGGCCAAGCTCTACGGTGAGCCAAATTGACAGCTCTAGTTAATACATCGCAAAAATGCCCTCAATCTTGATTCATCATTTATGGCCCATTAAATTTAGCACATTTCTGATCCAGAATCAAGAAATTGAGAATTGATAGGTTCCTAAACTGGGAACCTAATCAAGAACTCCCTCACAGTCTCTCACACCCAGAAAACAGAGAGAAATATGTGGTGAATTGTGTATTATTAACAGAAAAAATAGTGTGTATACAAGATCCAGAGGCATAACCCTCTTCAGAGGTCAATGGCATGTTAACAAACAATGTACTCAAAAACTACCTTCTAACTATCCAAACAATCTATTTATACAATTCCTCTACCTTCTATCCTAATCCCATTTCCCATTATACCCTTATATCCCAAATACCCTATATCCTAACAAGAACTCATGTGGGTTTCTCATGACATTTTTATTAGCATTCTTGAACTGCCTTTTACACATATGACAACCCACTGTTGCTTTCAGGAGAGGATTCAAATAGTTGATTATATGCTAATTTTTTTTACTGTGGAACTGTCATGTTGGTTTCATTCATAATATACTGTTGGTAAATAGTACTTAAGATTAGTATATATAAAATTGTACTAGTGATTAAACCGGTGAAAATGGCTCATGTTTCACTAGTATAAGGATTGTTGGACCAAATACACACGCACGCACTCAAGGATGAATTCAGACCCTCTAGAGTTGGTTTAAAAACTACAAGGATCTTGACCCTTAAAATATTAAGTTTGTTTTGTAGAAGTAGTTTAAATAACTGTGGTGTAAAGCCGTTAGATCCAAACTGCATGGGATGCAGTTCATTTTTGGACTGCAGAAGATCCATATCCCCATATGCACACCATATTCTATATCCTGCAAGAAAAGAAAAACGCAATGAGGTCAAATAATGATCATTCTACAGGTACATGACATAGAGTGTTAAAGGAAAACGAGGTTGAAGGGGTAACCATTGTGTTCCTTGATGCTTGGAAGTTCCACACTGGAAAGTCAGTCAATTATAAACGTATATAGAAGCTCAGGGGAGGGAGGGAGATTATATTTGCGAGTCCCTAAATGAAAACTAGGACGGAGGCAAGTCATATCATCCCTTGCTTACATGCTGGCCTTTGTAGTTTGAAACTGCTGTCACTTGGCTTAAATAATCCTTCGGATTGAATTCAACGAAACTTGAATTCCATGGTCATCTCTTCCTTTCTTACAACATGTATACTTTTGCACCTTCTTAAGAGTTTTTCCACTTATTAATTTGTATTATAATGCAGTTTGCATTGCCACACATTATGGGTTGGGACCAGATAACTAATCCGCAATCCAGAGGCACAGTGGGCATTCAACGGAAGGGTGGCTCTCAAGTTTTAGATTTGGAATGGGAAAAATGAATTGCTGCAGAGGAATATGAAATGGATCCTTGTTTGTTTCGCAATTCCATTTCTATATTGTCAATTTGAAGACTAGGATTACTAGTTATCAATTTTGTATATTATAACTGGCAATATTTGATCAGGTGTCAGTAGCTTTTTGCCATTAACCATGTTATTGTGTTGTCATATAACTTGTAAAACCACTCAGGTCTTCTGTCTGGTTTTGAAAATACTATCTGGCTGTTTGAACATCAACAGTCTGATTGCAACACGGACGAATATGAGTCGTCAAGTTAAATGCTAACAGATTTAATAGTT