Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23026 LG5 61516109 61518393 PREDICTED: probable WRKY transcription factor 30
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to salicylic acid, regulation of transcription, DNA-templated, response to ozone, response to hydrogen peroxide, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, leaf senescence, regulation of transcription, DNA-templated, response to hydrogen peroxide, response to ozone, leaf senescence
Cellular Component   is active in   nucleus
Cellular Component   located in   cytoplasm, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
T/G 61516158 3_prime_UTR_variant
G/A 61516159 3_prime_UTR_variant
G/A 61516179 3_prime_UTR_variant
A/T 61516217 3_prime_UTR_variant
G/T 61516218 3_prime_UTR_variant
T/G 61516255 3_prime_UTR_variant
A/T 61516293 3_prime_UTR_variant
G/A 61516597 missense_variant p.Ser318Leu
A/G 61516738 missense_variant p.Leu271Pro
G/A 61516824 synonymous_variant p.Thr242Thr
T/G 61516873 missense_variant p.Glu226Ala
A/G 61516879 missense_variant p.Ile224Thr
T/G 61517183 intron_variant
A/C 61517267 intron_variant
G/A 61517303 intron_variant
G/A 61517337 intron_variant
A/G 61517343 intron_variant
A/G 61517360 intron_variant
C/T 61517391 intron_variant
C/T 61517489 intron_variant
A/G 61517593 intron_variant
G/C 61517603 intron_variant
G/C 61517605 intron_variant
A/G 61517809 intron_variant
A/T 61517812 intron_variant
A/T 61517822 intron_variant
C/G 61517952 missense_variant p.Gly72Ala
C/T 61517953 missense_variant p.Gly72Ser
C/T 61517983 missense_variant p.Gly62Arg
A/G 61518243 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23026.1
MEQSPKRKHSSLIHELIQGKELAKQLGNLLVSSSPSSHEANELLVDKILSSYEKALTMLNWGSIVGEAKTTGATMMDSHCSFTNGGSPKSEVVDRELDHKAVLKKRKTMPRWTEQVKICSRTGLEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKYLNKAFPSNIKKGLGENQFHNDETNQPIKEKIQETPVGIFAFETEHRVKTEELEIKEDIFPWFSFPSQSNGSENEDVLLESTFENHFTESFSPAFISPATSESNPFCLSACYLNSTELLCQQIQTSESDITETFSAPTSVTNSPILDLDILLHKGDFDTDFPFNNPDFFSSFELPCTST*


CDS Sequence:
>Vu_23026.1
ATGGAACAGAGCCCCAAAAGAAAACACTCTAGCCTCATCCATGAACTTATCCAAGGTAAGGAGCTAGCAAAGCAGCTCGGTAACCTTCTGGTTTCTTCTTCTCCATCGTCCCATGAAGCCAATGAATTGTTGGTTGATAAAATTCTCTCCTCCTATGAGAAAGCACTCACCATGCTGAACTGGGGGTCCATTGTAGGAGAGGCCAAAACCACCGGTGCCACCATGATGGATTCCCATTGTTCTTTTACGAATGGAGGGAGTCCCAAAAGTGAGGTTGTGGACCGTGAATTAGATCACAAAGCTGTCCTCAAGAAAAGAAAGACCATGCCTAGATGGACGGAGCAAGTGAAGATTTGCTCAAGAACAGGACTCGAGGGGTCTTTGGATGATGGATATAGCTGGAGGAAATACGGGCAGAAGGATATTCTTGGAGCCAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTTCAAGGGTGTCTGGCAACTAAACAAGTTCAAAGGTCAGATGAAGACCCGACAACAATTGAGGTGACCTACAGAGGAAGACATACGTGCACGCAAGCTAAGTATTTGAACAAGGCATTCCCATCAAACATAAAGAAGGGTTTGGGGGAAAATCAGTTCCACAATGATGAAACCAATCAACCAATTAAAGAGAAAATACAAGAAACCCCAGTGGGGATTTTCGCCTTTGAAACTGAGCATAGAGTCAAAACCGAGGAATTGGAAATCAAGGAAGATATCTTTCCATGGTTTTCATTTCCTTCTCAATCAAATGGATCAGAAAACGAGGACGTGTTACTCGAGTCTACTTTTGAAAACCATTTCACCGAAAGCTTTTCTCCTGCATTCATATCACCAGCCACTTCAGAATCAAACCCTTTCTGTTTGTCAGCGTGCTACTTGAACAGCACTGAACTGTTATGTCAACAGATTCAAACCTCAGAGTCTGATATCACTGAGACATTTTCGGCCCCAACTTCAGTAACCAACTCCCCAATCCTGGATTTGGACATTTTGCTTCATAAAGGGGATTTTGACACGGATTTCCCTTTCAACAACCCTGACTTTTTCTCTTCATTCGAACTTCCCTGCACTTCCACTTAG


Promoter Sequence:
>Vu_23026::LG5:61518393-61520393(-)
ATTTATAGGCTTCTTCGTGAATTGATAATTAAGTTGACTTAATCACAATAATCTTTAACTTCGTATTCAAGTTTAAAGATTAAATCCATATACAATCATATTATAGGATAAGTTATATACATATTAATATTTTAATAAATAAGTGTAATTTAATTGAAAATATATAAACTAAAGTTGTAAAACTTAAAGTAAATAATTATCTTAAGTACACACCAATTAATTATGCAAGAAAAAAAGAGAGTCAAATTTGGTTATTAAAATAATTGAAAGTTGTTTAATTTTGATATAAATGAATTAGAGAAATCCATACGTGTCTTTTATTAAAGGTTTAAATTCTCCTGTTAATTTTCATTTTGTTTTAAAATTTTAATTAAGTATTTAGATTTTGATTGATCTCAATTAAATCTCATTTTTTTAAATGTGACGCAACTTGAGTATTATAGCAACAAGGTTAATTTATGTAATGTTGGGATAAGTGTGAGATGAAATATTTTAATTTAGTCTGTATTTGTTATTTTATCTTAATTTAGTTTTAATTTATTTTAAAATATTATAATTTCATTTATATTTAAAGATTAAATTTAACTTTTATATAAATATTATGATATTTTTAACAATATTGAATTTATTTAATTTTATATTTTATATTAACTTATTTTAGATTTACTTTTAAATATTTATATATCAATCATCTCTATACAAATGTTAGACATTTTTCAAAAATAAAATTTTTATAGATTCAAATGTAAATTTTAAAATAGTTTTATAAAAATTTAAAATAAATATATGTAAAATTTTAAAACAAAATATAAATAAAATTTAATTTAAAATATAAATTTTACATGACATTTTATTATCATCACTCATGACACTTTCTCACTGTTGTATATAATAGGACCGTAATTTAATAGATGACAATTTAAAAAAAAATAACAAAATAAAAAAATCACTAACTCATACATGATACATGAATTAATGCGATACGTTATTACTAACGAAACAACTAAATCATATCATAATTTAAAAAATAATGACCTAATTAAATATTTCAAAGAAATATGAAAAGAAACAAAATGTTTAAACTTTTATCAAACGATAAACAAACTCATCCTAAATTGAAGAGACGAAAACAGCTGAAATTTCCTTGAAAGAAAACACAGAATGACGGTCAGCTACCCAAGGAAGGGCAATTAATGGGAAGGAATGAGACTCACGTTAGAGCATTAACATCATACGCAGTGTGATGCACATTACATCACGATAACAACATCCATCCCTTTCTGTCGTTTCGTCCTGTTCAACATCCACAACACTGGTCCCTTCCTTTCACCCTCACCATCACCTTCGGTAGCTCCTACCAAAAGATTAAACTACTTTTTACTCATTTTTTTGTTTGCAATTTAAGATTGACTCCGAGTTTTAACACTAAAAATGACAAAGACGAGCATGGATAAACTTATTGTCTTTAACATTTTGGACATCAATTTAATTTTATGTCTCTATTGAATTCATGTCTTATTAATAATGTCTGTCTCCTAACTGTCTTCCTCCAAAGACGTATCTATTCTTAACATGTTATAACATCCTGTGTAATTGTTTCTGAGTTCTCGGTTTTTCTATGTTTTTTATCCCCTGATGGAAAGTGTAAGAACTTTATGAGGAGTAAAGTAAGATGTGTTCAAAATAAGAGAAAAGTGCTTGGAAGGTAAGAGATTGAACTGGAAATGACGAGGTGGAATAGAAGAATCTTCGGACTTGTTTCCATAGGGAGGAAAGAACGCGTGAGGATCTCTTGACCCACACAAGGGGTTTGAAAGAGTCAGCACATGAAATAAAAAAGATCACTCTCAAAGACTCCAACAAATCTATGCACACACTAAACTCTCCACTATCATGGACCCACGTTGTGGAAAACTCGTTCGGTTTAGCCAGTCAAAAGTATCTCCTTCCGTTCAAATTTTTCACTCTTATATATCCCTCTTCGTCTCACCTTCCAAACC


Gene Sequence:
>Vu_23026(-)
AAGTCTTGTGTATATTTCACACTCACTTTAAGTCTTACTTTGCTGCCTTATATCTCCTCACTTTAGCATCCCCTTCATTTGGCACAACATCACTACTTCATTCTGCCTTGGATATTCTCCTTAATATGATCAAATCCCTCAACTGAGGAATTCAAGGCCTTAGTGCAACCAAGTAGGAGAGTAATTCCCTATCTGTTGTTTTGTTCTTGTTAGTTGATTTACACCAAATGGAACAGAGCCCCAAAAGAAAACACTCTAGCCTCATCCATGAACTTATCCAAGGTAAGGAGCTAGCAAAGCAGCTCGGTAACCTTCTGGTTTCTTCTTCTCCATCGTCCCATGAAGCCAATGAATTGTTGGTTGATAAAATTCTCTCCTCCTATGAGAAAGCACTCACCATGCTGAACTGGGGGTCCATTGTAGGAGAGGCCAAAACCACCGGTGCCACCATGATGGATTCCCATTGTTCTTTTACGAATGGAGGGAGTCCCAAAAGTGAGGTTGTGGACCGTGAATTAGATCACAAAGCTGTCCTCAAGAAAAGGTAATATCACGAGCTACCAAGTTCTTGTTTCTGTGAATTCTGTCAATTGTTGAGACTGGTTTTCTGATTTCAATATGGAACCCTTTGAATTTTTGGCGTGCAGAAAGACCATGCCTAGATGGACGGAGCAAGTGAAGATTTGCTCAAGAACAGGACTCGAGGGGTCTTTGGATGATGGATATAGCTGGAGGAAATACGGGCAGAAGGATATTCTTGGAGCCAAGTTTCCAAGGTCAGTTAGAAGCTCTCTTCTCATTTAACTTTCATTGTTATAAATTAAACAAGTTTGATTAAATGTATGCATGTATTCAATTTTTTCCTGGTTACAGAAAAATCAGTGGTTAATTATTCCAATCTGTAGACTAATTCAAATGAACTTAAATTCGTCCCTTGTGTAAAAGGTGTTGAGTTGTATTAATGGGGTTAATTATGGAGTTGTGTGGCACTCTTATCAAATGGGACAACTTGTTGTAGAGTGCCATGCTGGTTTTGGGTTTGGCTGCTCATGTACCCCATTCATTATTAAATGCTATGACATGCAAATTGCAAGCGAATTTATAATGATAGACAAGAACAGAACATTAAGGCCTTTTTTCTCATTATTTTTTGACAGACTGTACTATAAACTTGAATGCAAATAAAAAGGATCATAAAAGAATACACGTTACTTTGCCAATCTGTAAAGAAAAAGAAGAAACTATTTTATAGTTTTGCCAAAAACTGACAACTTGTGGTTTGCATTGCAGAGGATATTACAGATGCACACATAGAAATGTTCAAGGGTGTCTGGCAACTAAACAAGTTCAAAGGTCAGATGAAGACCCGACAACAATTGAGGTGACCTACAGAGGAAGACATACGTGCACGCAAGCTAAGTATTTGAACAAGGCATTCCCATCAAACATAAAGAAGGGTTTGGGGGAAAATCAGTTCCACAATGATGAAACCAATCAACCAATTAAAGAGAAAATACAAGAAACCCCAGTGGGGATTTTCGCCTTTGAAACTGAGCATAGAGTCAAAACCGAGGAATTGGAAATCAAGGAAGATATCTTTCCATGGTTTTCATTTCCTTCTCAATCAAATGGATCAGAAAACGAGGACGTGTTACTCGAGTCTACTTTTGAAAACCATTTCACCGAAAGCTTTTCTCCTGCATTCATATCACCAGCCACTTCAGAATCAAACCCTTTCTGTTTGTCAGCGTGCTACTTGAACAGCACTGAACTGTTATGTCAACAGATTCAAACCTCAGAGTCTGATATCACTGAGACATTTTCGGCCCCAACTTCAGTAACCAACTCCCCAATCCTGGATTTGGACATTTTGCTTCATAAAGGGGATTTTGACACGGATTTCCCTTTCAACAACCCTGACTTTTTCTCTTCATTCGAACTTCCCTGCACTTCCACTTAGATAGTTAAAGAGTGGGTACCAACTAAGAACAGCGTAGCCAATGCCATAGTCTGTTCTGGATTAACTTGTGAGTCTTAGATCCTGGCTATGGAAGGGTATCATGGGTCATGTTGATAAACGAAGACAATGAAACCTCCTTGTCATGCAAGTTTAGTAGAGTTTTCCTGTATGTAATTTAAGTTTTTACCTAGGGTTAGTGCGTAAATAATTTGTAGCTGTTGTGTACTTGTGCATTTTGTTACTTGTAATTGGTTCCGGTGTTTCTTTGGGCTCTCAAGAATTGAGTTTCTGAAATGAATGAGTTCTCATATTAGCTGCTGTCTAT