Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23052 LG5 61802949 61803803 PREDICTED: LOB domain-containing protein 1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to water deprivation, response to fungus, response to abscisic acid, defense response, response to water deprivation, response to fungus, response to jasmonic acid, response to abscisic acid, response to water deprivation, response to jasmonic acid
Cellular Component   located in   mitochondrion, mitochondrion, nucleus
SNP Position Effect Amino acid change
G/C 61802993 missense_variant p.Leu113Val
A/T 61803308 intron_variant
T/A 61803382 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23052.1
MLMRQKQVCNINLAQLAGCYAADVTTVEEAKRGDAVKSVVYEATARLRDPVYGSAGVIYELQKMIEELKAQLDSIRTRMSEMREEKELLLSIGNNYDPMFDSAMASDPFEFPLEGGCLYSNISTPS*


CDS Sequence:
>Vu_23052.1
ATGCTGATGAGGCAAAAACAAGTATGCAACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAACGGTTGAGGAAGCAAAGAGAGGTGATGCAGTTAAATCCGTGGTGTATGAGGCCACAGCAAGGCTTAGAGATCCAGTTTATGGGAGTGCTGGAGTTATTTATGAGTTACAAAAGATGATCGAGGAACTTAAGGCTCAGTTGGATTCGATAAGAACACGGATGTCAGAGATGAGAGAAGAAAAGGAGCTGTTGTTGAGCATTGGTAACAACTACGATCCTATGTTTGATTCTGCTATGGCCTCAGATCCATTTGAATTTCCTCTGGAAGGTGGCTGCCTATACAGCAATATCTCAACACCCTCCTAG


Promoter Sequence:
>Vu_23052::LG5:61803803-61805803(-)
GAAAATTGATGATTTTTTTTTTAATTTTGCAATCATTTTTATAATTTTTATTAATGATTTAAGATAGCAAAGTACTCGAGTCAATAATTCACAATTACATCCATGTAAATATCCACAAAAAGAAGGACTACACATTAAGACAATTTTTACATTTAGAGTTAATAATTTAATTTGTCTTGCCTTTCCACTTAATCATATTATATAGACGATACCACATTACTTCCAACAATAGATACTTACAATAAATAAAAAAATAAGTAATATTTTATTAAAATAAATTAAGATAAAAATATAATTATTGAAATAAATAAAAGTAGAAACATAATTATAAATAAACATAATAAAAAAATTCCAACATATGGATTATAATGGATTTGTTACATATATGTTAAATCAGATTAGCATGCACATAATGCAGTTAACATCTAATAATATACTAGCAAAACAACTATAGTATAAAGGCAGCATACAACTGCACAATTTTTTGTAGTATAAGATAAAGCTAAACTGAATCAGTAAAATATCTCTCATATATGTTCTCCACCACACAGAATGTTTGTGTCATTGGAAGATAGGATTATCGGCCAAAAACTTTTATCTGAATAAAACATTTCCTCCTCCATCTAAAAAAGAAACAAGTTTTTCCAACTTATATCCATGGCACCTTATTATTCGCATTATCACATCCATTTCATTTGAATGTTCTTTGTACATACAAATACTAAACTCACCCAACATGTTCTTAGAAGCTTTATAAAGAATGAAAAGTAAGGAAAAGACCAGTAGAGATCACCGAATTTAACCAGATCAGGAAAAATATTTACTCTTTTAGAAATTCATGATCTTTTCCTTTCAAATATCCCGTAAATTTGACAGGTTTTGTTAGGGTGTGGTTTTGCTGCATATGATACACATTCTTTTTTCGACAAAAAGAAGAAAATTAGACAGGTTTTGCCCATCACATTATATATACATATTAAATAGGAAAATCTTTTGACACATATGGTCTATTATCAAATAGTTATTAAAAAAAATATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATATATATATATATATACGTAACTTCTTAGTTAAAGTTGATCTAGCATGACTGGCACCTAGATTGCGAGCACCGACAAAAAGGGTTTAATTAATTCCACTTTATTTTGAAGATTTTGTTTCGTATATATTTTGCTGTTCCACTGCAGTCAAAGTCTCCCTGTGATTATTGCATATGGTAAACACGTAAGGTATAATAAAACGCTACCTGTCAACGAAAGCTAGCTAACGCTTTTGTTTTTTGTTTTGAATTTTCAAGGAAAGAAACCACTGAAAGGAACACTGAAAGAAAATAATATGTTATATCGAAATGTGCATGGTAAGACATTTTACACTTCCTACTTTGAATTCACCCCTATATATTTGACGTATGGTATGTATGTCCAAAATTCAAAAGATATGCCATATATGTTTTATATATTTTTCAACATTTCATTAGGTAAAAATGAAGTTTATTATACAAAACATTTAAACTTCTGACGGTGGTCCTAATGCATTTCTTCTGTTTTTTAGCTCCTTCCAATGTAGTTGGAGTTTGGCGTAGCCACGTGGGAGTTTGTATTAATTTGGTGAATCAGTGTGCTTGGTCTTATTTGTCTAAACTGGGGAAAACCTAATTGGATTACCTGTGTTAGGTCCCCTGTCCCAACAGTGAGATATACAAAAGTCACAGAATGTTTTCAAGTTATTGTTTTTATGTCTACTTTTACGATTACCGTCATCCAAAATCTGTCTTTTGTGGCCGCCTCTGCATCTTCCTTGCACTTAACCTTTGAAAAGGAGCACACACATGCAAGAACTTCTCTGCTTTTCCTATTGTAATAACAACTTCATCTTCTACATATATAACCTTGATTATACTTATGACACTAATAATATTTCTTCACGACACAAGATATGGCTTTCC


Gene Sequence:
>Vu_23052(-)
ATGCTGATGAGGCAAAAACAAGTATGCAACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGAACTTGCTCCGTATTTCCCAACCGACGAGGTTGAGAATTTTGCCGTAGTGCATAGAGTGTTCGGTGCTAGAAACGTTATCAAAATGATTCAGGTGGGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATGATGCATCCATTTTGTTACTAACAAAAGGTTTATCTAATATTTTAACTAAAATAATCTTCCATATTGTCTTGTTAGACGGCCTTTTTTGTCCAATGTTTACTATATGCCGTGATTGAAGCGCTGATAAATGCATACTTGTAAAATCTGTTGTAGAATAAAATGATATCTCTTCTTTAGGAAAGAAAACATTTAACTAACTTAAACCATGAACTGATACATATATATGAGCACCTTTGTGTCGTTTCTTACACACGAAGCATGTTAAATAATGTTGTTGTTGTTGTAGACGGTTGAGGAAGCAAAGAGAGGTGATGCAGTTAAATCCGTGGTGTATGAGGCCACAGCAAGGCTTAGAGATCCAGTTTATGGGAGTGCTGGAGTTATTTATGAGTTACAAAAGATGATCGAGGAACTTAAGGCTCAGTTGGATTCGATAAGAACACGGATGTCAGAGATGAGAGAAGAAAAGGAGCTGTTGTTGAGCATTGGTAACAACTACGATCCTATGTTTGATTCTGCTATGGCCTCAGATCCATTTGAATTTCCTCTGGAAGGTGGCTGCCTATACAGCAATATCTCAACACCCTCCTAG