Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23053 LG5 61810954 61812393 PREDICTED: transcription repressor MYB6-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   seed coat development, trichome morphogenesis, regulation of gene expression, seed coat development, mucilage biosynthetic process involved in seed coat development, seed germination, trichome differentiation, mucilage biosynthetic process involved in seed coat development, seed coat development, mucilage biosynthetic process involved in seed coat development, mucilage biosynthetic process involved in seed coat development, seed coat development, mucilage biosynthetic process involved in seed coat development, trichome morphogenesis, mucilage biosynthetic process involved in seed coat development, trichome morphogenesis, trichome differentiation, mucilage biosynthetic process involved in seed coat development, cell differentiation
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/G 61811338 missense_variant p.Glu154Gln
G/A 61811716 intron_variant
T/G 61811903 intron_variant
A/T 61812005 intron_variant
A/G 61812016 intron_variant
G/A 61812054 intron_variant
G/A 61812094 intron_variant
G/A 61812153 intron_variant
T/C 61812210 intron_variant
C/T 61812327 missense_variant p.Ala23Thr
T/A 61812334 synonymous_variant p.Arg20Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23053.1
MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPKTHHKLTVPPEKKKGKKKNKQKHENKKGSSEKTLVYLPKAVRVKAVSCVPRTESTFTLDSNSGSASTSQEKVQSPEEVAREVNMVWGVGNEGDHGGVGIFFGEDHDLVNTSSYVECHSDDVHTDHGTLQKLYEEYLQLLKDEEKPADELDSFAQSLLV*


CDS Sequence:
>Vu_23053.1
ATGGGAAGAGCTCCTTGTTGCTCCAAAGTAGGGTTGCACAGAGGTCCATGGACTCCACGAGAAGATGCTTTGCTCACTAAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCACTGCCAAAAAGAGCTGGTCTTCTCAGATGCGGAAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACTCCAGAAGAAGACGATCTCATAATTAGAATGCATTCACTTTTAGGAAATCGATGGTCCCTCATTGCTGGAAGGTTACCGGGACGAACAGATAATGAGATAAAGAATTACTGGAATACCCATCTTAGCAAGAAGCTGAGAAATCAAGGAACAGATCCTAAGACACACCACAAGTTAACCGTACCACCGGAGAAGAAGAAGGGCAAAAAGAAGAACAAGCAAAAGCATGAGAATAAGAAAGGGAGCTCTGAGAAAACCTTGGTTTATCTACCAAAAGCCGTGAGGGTTAAGGCTGTGTCATGTGTGCCTCGAACGGAGAGCACCTTCACCCTGGATTCGAATTCGGGTAGTGCATCGACGAGCCAGGAGAAAGTTCAAAGCCCAGAAGAAGTAGCAAGAGAGGTAAACATGGTTTGGGGTGTAGGCAACGAAGGAGACCATGGTGGGGTTGGAATTTTCTTTGGTGAAGACCACGACCTAGTCAACACCTCCTCTTACGTGGAATGTCATTCTGATGATGTTCACACTGATCATGGTACGCTACAAAAGCTCTACGAAGAGTACTTGCAGCTCTTGAAGGATGAAGAGAAACCTGCGGATGAATTAGATTCTTTTGCCCAATCTTTATTGGTGTAG


Promoter Sequence:
>Vu_23053::LG5:61812393-61814393(-)
AATTTACAAGACTAGGGGGTCAGTTAAAGACTGTTCTAGTTTAAGGAACCCGTAATTAGTTATGAATATCTATTTAGTGATTTAACCACATTTTTTTTTATTTTTCTTAATTTAATTTAATTCTAGAATTTTATTAATTGTTTTTTATGCTAGAATTTTGTTATTGGTGATGGACTTCTTCTTTTCTTTTTTTCTGAAGATTTAGGCTTTATACTTGGTTTGAGATCGAATCCTTATACTCATTCTTAGCAACCAATTAATATTTTATTAACCTGTTATGAGGGGAAAGAAGACACAACCAGTTCAACGTAGCCAGAAAATAAAACGAATATTCAAAGTCATTATTAGATGCTTTCATATACTTAGTTGTATAAACTAATAACATATCTTCATCATTTGCAACGGCAACAAATCCAGATTTTATTTCTTTATTCCCTCAATGACTAATTCCATTCTACTTTGGTGCAGAACTCAATAAAAAGAAAAGAACAAAATGGAATTTTTCCAAGTGTGTTTTTAAGTATTATTCGTTAATTCACTACAATGGAGTCAGCAAACAAACGGACTCCCTCCAACTATGTTAAATATTATTATATACAACCGAGTCAAACAGGGAACTACTGTCTTTGTTTATATTTATTTAATTTTGTTCAGAATTGTTATAAATACTAGCCAGATAAGTTCGTCTTACAAATTTTATATACTTACTATAATTATTTTTTTAATATATTTCTTACTTGTGATAAAAAATAATCTCATCCCCAAATTCCCACAAAAGTAGAAGAGGAACTTAAACAAACAAACAAAGGGACTCCACATAAATGAAGTTGTACACATTAATTAATATTAATACGTCTTTACACTCTTCTTTATTAAATACTAATAAAACATACAATTTCGACGCATTCCTTTAACCGACATGCAAGTGTGGAAATATATTTTGAAATTAAAATCCAACAGCAATTAATAATGCTACTTACGTAAAAAATAAAAAGAATTTTGACATAATTTACCGACAGTTTTTTTATTAGGAAAGACAAAACGTGGATCTCTGGTCAATCCAAAAGTCAACAATATCGCATCAATTCAATTCATGGTCACGACGCATACAGTTCTAACAGTGACAAATTTGAATGTAAGAGCATATAAAAAGTGGTGCAGATTGGATTAAATCCGTGTCGGGTTTAATTATTTTAAAATAAGTATTTCTTTTTGTAGTATGTTGAAGTATTTTAAAAAAATGGTTAGGGCAAAATAGTAGAAACCATTCGACGGCCATAATAATGTCTTAATAGAACAAGTTTACGAGACATATTTTTCAGTGACAATGTCTTCCATGGACGTGTCCGATAGGTTCACGTCAAGTCCCAAGAATATAAATGCATGTAAAAGCAATAAGAGAAAGCATGCGGTAGAAAGACAGATAGAAGAAAGGTCGTTGAGTTTCGTGCATGGATGTATATTTACAAATTAATAAATTAGAATATCATTACTCCATTTATACACATATAATAAGATCACAACCTTCCAAATAAGACGCATAGCCATTTTGCGGTAAAAGTATTTAATTAAGAAATGGTTTTATTAAAAGCAAAGGTTTATATATATAATATATTATATATATATATATATATATATATATATATATATATATATATATATAATGTTTAGTATTTTTAAACCATGTAACTTGTGATAGAGAATTATGAACAAATCTGAGGTGAGAATTAGGGTGAGAGAAGGGGTAATGGTGGCTGGCTTTCAAGTTTGAATTAAATAATGAATTTAAAATTCAACAACCATGAATCAGATTTGTCGTGGTCCATGGAATAAAACAAATATATTATTTTAAAAGAGAAGAAACGTGGTATTTAAAAGGAGGGTAAGGTGTTGAGAAGCTGAGAAGCTATGGTGTGCTTCCTCATTACGAGGTAGAGAACCTTCTGGATCTCTCTCCATCCACCACTTGAAAGTGAGTTTGGTTTTCTTGTGTGAAGAAG


Gene Sequence:
>Vu_23053(-)
ATGGGAAGAGCTCCTTGTTGCTCCAAAGTAGGGTTGCACAGAGGTCCATGGACTCCACGAGAAGATGCTTTGCTCACTAAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCACTGCCAAAAAGAGCTGGTCATAATCTCTTCTTCTTCTTCTTCTTTCATAATCTTCCTTCCTTCTTCATCTTCCATCTCAATGTTCTTCGTCTGCTTCTCCCTTTTTAATATATTAATCTCAAACCAACTTCTTCCTCTTTCTTCTTTGCCTTTCTCTCCTATCTTTATTGTTTTTTCTTCTCCTTGTTATCATCGTCAAACTTTCGTTATATAATATGTTCCCGATCAGTATGTATGTGTAAATGGCATCTTTCGTTCTTTCTTACACCATTACATCTCATTGTCTTTATTCTATTAAATTTATTTATTTTTTAATTATCATATTTAATAAAATTGTTAATTTGTTGAATAGCTAATCATAAATAAGGTTAGTAAAATTTATATCGTGTATTTTTCCGTTTTTAAACATGCGTATGGTGGGGACAACAAGGTGTTCCGTGATAGCTGTCAAAAATTATATTTTCTTGGTAACATATTAATTCAAGTTGTCCCCCACCTTCAATCATCTGAGTTAATTGATTTTACCATATGAACATGGTAAGTTTACGATAGACACAGTGCCTTTTAGTTTTGTTTTGAGCTAGATAATGATGGTTGGTGGTCGATGCAGGTCTTCTCAGATGCGGAAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACTCCAGAAGAAGACGATCTCATAATTAGAATGCATTCACTTTTAGGAAATCGATGGTCCCTCATTGCTGGAAGGTTACCGGGACGAACAGATAATGAGATAAAGAATTACTGGAATACCCATCTTAGCAAGAAGCTGAGAAATCAAGGAACAGATCCTAAGACACACCACAAGTTAACCGTACCACCGGAGAAGAAGAAGGGCAAAAAGAAGAACAAGCAAAAGCATGAGAATAAGAAAGGGAGCTCTGAGAAAACCTTGGTTTATCTACCAAAAGCCGTGAGGGTTAAGGCTGTGTCATGTGTGCCTCGAACGGAGAGCACCTTCACCCTGGATTCGAATTCGGGTAGTGCATCGACGAGCCAGGAGAAAGTTCAAAGCCCAGAAGAAGTAGCAAGAGAGGTAAACATGGTTTGGGGTGTAGGCAACGAAGGAGACCATGGTGGGGTTGGAATTTTCTTTGGTGAAGACCACGACCTAGTCAACACCTCCTCTTACGTGGAATGTCATTCTGATGATGTTCACACTGATCATGGTACGCTACAAAAGCTCTACGAAGAGTACTTGCAGCTCTTGAAGGATGAAGAGAAACCTGCGGATGAATTAGATTCTTTTGCCCAATCTTTATTGGTGTAG