Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23079 LG5 62049518 62051275 PREDICTED: DELLA protein RGL1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of gibberellic acid mediated signaling pathway, salicylic acid mediated signaling pathway, response to ethylene, salicylic acid mediated signaling pathway, regulation of seed dormancy process, negative regulation of seed germination, negative regulation of gibberellic acid mediated signaling pathway, response to abscisic acid, jasmonic acid mediated signaling pathway, regulation of seed dormancy process, negative regulation of gibberellic acid mediated signaling pathway, hyperosmotic salinity response, response to ethylene, salicylic acid mediated signaling pathway, regulation of seed dormancy process, regulation of seed dormancy process, regulation of reactive oxygen species metabolic process, regulation of transcription, DNA-templated, response to salt stress, regulation of seed dormancy process, regulation of seed germination, gibberellic acid mediated signaling pathway, regulation of seed dormancy process, negative regulation of seed germination, regulation of reactive oxygen species metabolic process, response to gibberellin, regulation of transcription, DNA-templated, salicylic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, negative regulation of seed germination, gibberellic acid mediated signaling pathway, regulation of seed dormancy process, jasmonic acid mediated signaling pathway, regulation of seed germination, negative regulation of gibberellic acid mediated signaling pathway, hyperosmotic salinity response, regulation of transcription, DNA-templated, hyperosmotic salinity response, response to gibberellin, negative regulation of gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to abscisic acid, regulation of seed germination, regulation of seed dormancy process, negative regulation of seed germination, salicylic acid mediated signaling pathway, response to abscisic acid, gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, regulation of reactive oxygen species metabolic process, negative regulation of gibberellic acid mediated signaling pathway, response to abscisic acid, regulation of seed dormancy process, negative regulation of gibberellic acid mediated signaling pathway, regulation of reactive oxygen species metabolic process, hyperosmotic salinity response, response to ethylene, jasmonic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to salt stress, negative regulation of gibberellic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, regulation of seed dormancy process, response to gibberellin, response to abscisic acid, regulation of seed dormancy process, regulation of seed germination, response to ethylene, response to abscisic acid, salicylic acid mediated signaling pathway, regulation of seed dormancy process, negative regulation of gibberellic acid mediated signaling pathway, response to gibberellin
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
C/T 62049568 missense_variant p.Gly570Arg
C/T 62049656 synonymous_variant p.Leu540Leu
T/G 62049992 missense_variant p.Gln428His
C/G 62050865 missense_variant p.Arg137Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23079.1
MEDLYHVCFSTVDENSSSSNDIFWGSEEHNEIKKLHFSGAEDHGVYGGVDSFYSNFEFSTDYPSGYLISPNQEKYHQQQSYHDHGDLDDNLQFDMVSPPLQFDAQYPTSGTTEDKPHSTFPLASLEILKNYGKGFKRFSYEGKSLQPVVDSVATDEFGFRKLSTEDIMRIAGTRFIKSSSSESEPLTFLETHPYGFSFSGFSDEEKDDVALSESLLACAEKVGHQQFERARKLLSHCQSLSSKTGSPVKRIVHYFAEALLHRIDRETGRASSKDLHKGQSFDPEEAAKELNPAIAAFYEALPFCQISVFTAVQAIIEDIAEAKKIHVIDLEIRKGGQWAILMQALESRHQCPVELLKITAIESGTTRHIVEDTGKRLKDFAQGLNIPFSFNIVMVPDLLHFKEDLFEIDPEEAIAVYSQFALRAKIQQSDQLEIIMRVIRTLNPNVMVVSEIEANHNSTSFVNRFIEALFFFSAFFDCLEACMKGNEKTRMIIESLYFSHGIKNIVATEGAERKTRNVKIDVWRAFFSRFGMVEKELSTLSLYQADLVSKRFPCGSSCTFDKNGQCLIVGWKGTPISSVSVWKFI*


CDS Sequence:
>Vu_23079.1
ATGGAAGACTTGTACCATGTTTGTTTTAGTACAGTGGATGAAAATTCTAGTTCATCCAATGATATTTTCTGGGGCAGTGAGGAACATAATGAAATAAAGAAGTTACACTTTTCTGGAGCAGAAGATCATGGAGTTTATGGGGGAGTAGACTCCTTTTACTCTAATTTCGAGTTTTCCACAGATTATCCATCAGGATACCTTATATCCCCTAATCAAGAAAAGTATCACCAGCAACAATCATACCATGATCATGGCGATTTGGATGATAACCTTCAGTTTGACATGGTGTCTCCACCACTCCAATTTGATGCACAATATCCAACCAGTGGTACAACAGAGGATAAGCCACACTCAACTTTCCCTTTAGCCTCACTTGAGATCTTGAAGAACTATGGCAAGGGCTTCAAGAGGTTTTCCTATGAAGGCAAATCCCTGCAGCCAGTGGTTGATTCTGTGGCCACAGATGAATTTGGTTTTAGAAAGCTCTCAACTGAAGATATCATGAGGATAGCAGGAACAAGGTTCATCAAATCATCATCTTCAGAGTCAGAACCTTTGACTTTCTTGGAAACTCACCCTTATGGGTTTTCCTTCTCTGGATTCTCTGATGAGGAGAAAGACGATGTGGCACTGTCTGAGTCCCTCTTGGCTTGTGCTGAGAAAGTTGGTCATCAACAATTTGAACGTGCAAGGAAGTTGCTAAGTCACTGCCAATCATTGTCAAGCAAAACTGGGAGCCCCGTTAAGAGAATTGTTCATTATTTTGCTGAAGCACTTCTCCACAGGATAGATAGAGAAACAGGAAGAGCTTCATCCAAGGATTTGCATAAAGGTCAGTCATTTGATCCTGAAGAGGCAGCCAAGGAACTAAACCCCGCTATTGCTGCATTTTATGAAGCGCTTCCCTTTTGTCAGATTTCAGTGTTCACTGCAGTTCAAGCTATAATAGAAGATATAGCTGAAGCAAAGAAGATTCATGTTATTGATCTCGAAATCAGAAAGGGGGGCCAATGGGCTATCCTAATGCAAGCCCTTGAGTCAAGGCATCAATGTCCAGTTGAGCTTCTAAAGATTACCGCTATTGAAAGTGGAACCACTAGACACATTGTTGAGGACACTGGTAAGAGATTGAAGGATTTTGCTCAAGGTTTGAACATACCCTTCTCTTTCAACATCGTTATGGTACCAGACCTGTTACATTTTAAAGAAGATCTTTTTGAGATCGATCCTGAGGAAGCAATTGCTGTTTATTCTCAGTTTGCACTCAGAGCCAAGATTCAACAATCAGACCAGCTTGAAATAATCATGAGAGTGATTAGAACCTTGAATCCTAATGTGATGGTGGTATCTGAAATTGAGGCAAATCACAACTCCACATCTTTTGTAAATCGTTTCATTGAGGCTCTTTTCTTCTTCAGTGCATTCTTTGACTGTCTTGAGGCTTGCATGAAGGGGAATGAGAAGACCCGAATGATTATAGAGTCACTATACTTTAGTCATGGAATCAAAAACATCGTGGCCACAGAAGGAGCAGAAAGAAAGACTAGGAATGTGAAGATTGATGTGTGGAGGGCCTTCTTCTCCCGCTTTGGAATGGTGGAGAAAGAACTGAGCACTTTGTCTTTATACCAAGCAGATTTGGTGAGTAAAAGATTTCCTTGTGGAAGTTCTTGCACGTTTGATAAGAATGGGCAGTGCCTTATTGTTGGGTGGAAAGGAACACCGATTAGTTCTGTTTCTGTCTGGAAATTCATTTGA


Promoter Sequence:
>Vu_23079::LG5:62051275-62053275(-)
TCTTGCAAGATGACCCCTTACTAGATGACCTACTAGATTTTTGTACAATAAGAGACTAACTAAGCCTTAAATGGCTCCAAGACAGTTCTCAAAACTGCAGACTTTCCACAAAACCATGATCTTAAAATCTATTAAAACCCCTATTTTATGCCTAAATCTCACCCTTATTCTAATTTATCTCATACCCAAGTTATGTAAAAACATATCACCTCAAATTCACCAAACCTACATTCATAAACTCATCAAAAATCAAATTTTAACAGCTACAAACCAAACACACCAACATGCATCAGTTTTCAATTCAATACACCACCTTTCTCAAACACCCAACATACCAGATTTCACGATTTAATCCAAGTTCACAAATCAATCATCACATCATCATTTATCCCATTCCAATACCAAGTTTTGTAAAAACACATAAGCAAAAACTCACTAAATCAACATTCATAAATTCATCAATAAACAAATTTTAACAGCAGCAACCCAAAGACACCAACATGCATAAGTTTTTAATTCAACACACCACCTTTCTCAAACACCCAACATAGCAGATTTCACGATTTAATCCAAGTTCACAAATCAATTATCACATCATCAATAATCCCATACCCAAGTTCTGTAAAAACACATTAGCTCAAACTCATTAAATCTACATTCATAAATTCATCAATAAACAAATTTTAACAGTAGCAAACCAAACACACCAACATGCATCAATTTTCTATTCAATACATCACCTTTCTCAAACACCCAACATACCAAATTTCACGATTTAATCCAAGTTCACAAATCAATCATCACATCATCATACAAACCTCAAATATCATATGCATACCAAATCCAAACCAAACAAACTAGTTTCCCTTACCTGGTTGACACTCCAACAGTTCCAATAACTTTAAAATTTCTCCTACAACTCCAAGATCTTTATTTGCTCTCTATAGCTGAAATCAATCGTTTAGAAATGGAGATCTCGCCTCAATAAACCCTCAGGCCGTCTTTGATCTTCTAATAGATGAGTAGGGAGTTATGATTTTTAGAGAGAATGTAGAGAAAATTTTAAAGAAAGAAGTTTTAGAGAAATAAAACTTCTTAAATAATGAAACTCCTTGTCGAATCGAAGAATTCTATTTGTTCTTGTTAATATTTTCGAAATAAAATAATAAAGTATCATTATTTAAAATATATAACTTCACATTTCTTGATAACTTCACATTTCCTTCTTATATAACAACTACTTCTTATATAACAACCACTTTTAGCTCCGAGACTATCTTTGAAATAATCATATTTATTTATTTTATACATTAATTTAACATCACAGATTAGCTGCATGATAAAAAAAAATAGATATTCTCAATCAGTACAAAAACATTTTGATGATGGCCTAGTCGTGAACTATATCTTATATTTTATTTGTTCTTTTCTTTTGTAATTATGTCGTAGTGATTGCTTGTTTTCCTTTTTTTATTTACTTAGCGAAAGGCTTGAATATTTTTTTTAAATAAAATAGAATTGATTTTTTTTAAATAAATAGAATAGTCCAAAATAAGTTAAAGATCATAATATATTTTAACATTCAAATTGCGGATTTTTATCTTTCGATCATTACTTACGCCATCTTTCTCAGCTGGCTATTGTTGTCTTCTGGACGACCTTATTTCTTACACAGAGTTAGTCTAAAACATGAAAAAGATTAAAAAATATAAGAAGAAAATAAGCAATTTATTTAAATTTTATTATTTCACTGCATTATTATGCAGGCGACCTTGATGACATCGGCACGTTATGGTGACAACATTAATGTTAACAGTACTGGACGGATTTAGCATTAGAACGGATCAATTTTGCATAAAAATAATCAGAAACCATATCCTTAATTACTTAATCAATAAGGGTTAATACAAACAAAGGATTAATTATTTTATCAATAAGGATTACTCAAGGAACCTACTATGAATCTGATAATACTGAAGCAAAGCTAGTGACTGTTTGTT


Gene Sequence:
>Vu_23079(-)
ATGGAAGACTTGTACCATGTTTGTTTTAGTACAGTGGATGAAAATTCTAGTTCATCCAATGATATTTTCTGGGGCAGTGAGGAACATAATGAAATAAAGAAGTTACACTTTTCTGGAGCAGAAGATCATGGAGTTTATGGGGGAGTAGACTCCTTTTACTCTAATTTCGAGTTTTCCACAGATTATCCATCAGGATACCTTATATCCCCTAATCAAGAAAAGTATCACCAGCAACAATCATACCATGATCATGGCGATTTGGATGATAACCTTCAGTTTGACATGGTGTCTCCACCACTCCAATTTGATGCACAATATCCAACCAGTGGTACAACAGAGGATAAGCCACACTCAACTTTCCCTTTAGCCTCACTTGAGATCTTGAAGAACTATGGCAAGGGCTTCAAGAGGTTTTCCTATGAAGGCAAATCCCTGCAGCCAGTGGTTGATTCTGTGGCCACAGATGAATTTGGTTTTAGAAAGCTCTCAACTGAAGATATCATGAGGATAGCAGGAACAAGGTTCATCAAATCATCATCTTCAGAGTCAGAACCTTTGACTTTCTTGGAAACTCACCCTTATGGGTTTTCCTTCTCTGGATTCTCTGATGAGGAGAAAGACGATGTGGCACTGTCTGAGTCCCTCTTGGCTTGTGCTGAGAAAGTTGGTCATCAACAATTTGAACGTGCAAGGAAGTTGCTAAGTCACTGCCAATCATTGTCAAGCAAAACTGGGAGCCCCGTTAAGAGAATTGTTCATTATTTTGCTGAAGCACTTCTCCACAGGATAGATAGAGAAACAGGAAGAGCTTCATCCAAGGATTTGCATAAAGGTCAGTCATTTGATCCTGAAGAGGCAGCCAAGGAACTAAACCCCGCTATTGCTGCATTTTATGAAGCGCTTCCCTTTTGTCAGATTTCAGTGTTCACTGCAGTTCAAGCTATAATAGAAGATATAGCTGAAGCAAAGAAGATTCATGTTATTGATCTCGAAATCAGAAAGGGGGGCCAATGGGCTATCCTAATGCAAGCCCTTGAGTCAAGGCATCAATGTCCAGTTGAGCTTCTAAAGATTACCGCTATTGAAAGTGGAACCACTAGACACATTGTTGAGGACACTGGTAAGAGATTGAAGGATTTTGCTCAAGGTTTGAACATACCCTTCTCTTTCAACATCGTTATGGTACCAGACCTGTTACATTTTAAAGAAGATCTTTTTGAGATCGATCCTGAGGAAGCAATTGCTGTTTATTCTCAGTTTGCACTCAGAGCCAAGATTCAACAATCAGACCAGCTTGAAATAATCATGAGAGTGATTAGAACCTTGAATCCTAATGTGATGGTGGTATCTGAAATTGAGGCAAATCACAACTCCACATCTTTTGTAAATCGTTTCATTGAGGCTCTTTTCTTCTTCAGTGCATTCTTTGACTGTCTTGAGGCTTGCATGAAGGGGAATGAGAAGACCCGAATGATTATAGAGTCACTATACTTTAGTCATGGAATCAAAAACATCGTGGCCACAGAAGGAGCAGAAAGAAAGACTAGGAATGTGAAGATTGATGTGTGGAGGGCCTTCTTCTCCCGCTTTGGAATGGTGGAGAAAGAACTGAGCACTTTGTCTTTATACCAAGCAGATTTGGTGAGTAAAAGATTTCCTTGTGGAAGTTCTTGCACGTTTGATAAGAATGGGCAGTGCCTTATTGTTGGGTGGAAAGGAACACCGATTAGTTCTGTTTCTGTCTGGAAATTCATTTGA