Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23443	LG5	65398707	65399444	PREDICTED: nuclear transcription factor Y subunit C-2-like	Map

Annotations

category		relationship type		keyword
Pathway		B 09151 Immune system		C 04612 Antigen processing and presentation [PATH:ko04612]

SNP	Position	Effect	Amino acid change
T/C	65398708	splice_region_variant&stop_retained_variant	p.Ter246Ter
C/T	65398787	missense_variant	p.Ala220Thr
G/A	65398884	synonymous_variant	p.Gly187Gly
A/T	65398890	synonymous_variant	p.Leu185Leu
T/A	65399170	missense_variant	p.Gln92Leu
G/A	65399288	missense_variant	p.His53Tyr
A/G	65399319	synonymous_variant	p.Ser42Ser
G/A	65399329	missense_variant	p.Ala39Val
A/T	65399352	synonymous_variant	p.Pro31Pro
G/C	65399369	missense_variant	p.Gln26Glu
A/G	65399419	missense_variant	p.Leu9Pro
C/T	65399441	missense_variant	p.Glu2Lys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23443.1

MEQNQHGQLGRGIGSAPAQEAHNKNQYQSKPTNPPIQTAGPSVPSPYPGENHHALRSMDRQQQQQDQLEEKVKSFWAQQLKEIEESTDLRNQHRIPLSRVKKIMKSDADVKLVSAEAPVVFAKACELFIMELTMKAWANAEDNNRSTIKKSDVASAIARTDVFDFLEDIAPIPRVHKNTMMHPLLPGNAPTPTENVPHMPPPQHVASPPPPYVAAEIPHALQIYPLVPSSTVPPNQQNPSPTSDD*

CDS Sequence:
>Vu_23443.1

ATGGAGCAAAACCAGCATGGTCAACTAGGAAGAGGAATTGGTTCTGCTCCTGCACAAGAAGCACATAACAAGAACCAATATCAGTCCAAACCTACCAATCCTCCTATTCAGACTGCTGGTCCTTCTGTTCCTTCACCCTACCCAGGAGAGAATCACCATGCTCTCCGAAGCATGGACCGACAACAGCAACAACAGGATCAGTTGGAGGAAAAAGTGAAGAGCTTTTGGGCACAACAACTGAAGGAAATTGAGGAGAGCACTGATTTAAGGAATCAACACAGGATACCTCTGTCGAGGGTTAAGAAGATCATGAAGAGTGATGCAGATGTGAAGTTGGTTTCAGCTGAGGCTCCTGTGGTGTTTGCCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAAAGCTTGGGCTAACGCCGAGGACAACAATAGGAGTACAATCAAGAAGTCTGACGTTGCATCTGCAATTGCCAGGACTGATGTGTTTGATTTTCTTGAGGATATTGCCCCCATTCCTAGGGTTCACAAAAACACAATGATGCATCCATTGCTTCCAGGCAATGCTCCAACACCAACTGAGAATGTTCCTCATATGCCACCTCCTCAACATGTTGCAAGCCCACCACCACCTTATGTTGCTGCTGAAATTCCTCATGCGCTGCAAATCTATCCTCTCGTTCCAAGTTCAACTGTCCCCCCCAATCAGCAAAACCCTTCTCCTACTTCAGATGATTAA

Promoter Sequence:
>Vu_23443::LG5:65399444-65401444(-)

ATGTGTGTGTTTTCTTCGTGCAATTTATATTGGATTTTGTTTCAAAACATTTGTGTTTATAATATATATAGTTTTTATTCGCAATTTCTTTTTGTCTTCAACCATTTGCATGATATTTTTCTTTAGAAATACTATAACAATTTCACATAATTAACAATCAATAAATTCAAACTTATCAATAGATTTTTCTTATAAATAACTTTTTAAGTACGAAATTGTCCGTAAAATTTATGAGAAAGATATGTTTATAAATTATAATTAGTATTATGAAAAAATATTATTGTTAGTAACTTAGAATCATAATTATCGACGACGAAAGTCATCGGTATCATCTGTTAATAAACTACAAATTTTATTATCAACGAATATGTTTGTCAGCTCCTTATTATTGCAATTATTGATAGACACATTTTGTTGATAAATTCGTCCCCAAATTTCTTGTTCAGTTTAGTAAAGTTTTTTTTGTATATTTAGAGGAGATAAGTGAGAAGAAAAAGATAAGAAGAAGATAAGGGAAGGAGGAAGAAGAAGAGAAGGATGAGGAGAGGTGGCTTAGTGGTGATCCAGAGACACAACGATATTGTTCACTAGTGACACGAATGATCATCGGTGACATGACGATAACAATGGTTATCAGAGTTAGAGATGGAGGTGGAGGAAAAGGAAAAAAAAAGTGTTGGAAGTCCCACATTGATTAGAGATAAGGCAAAATTATAATATATAAACGGGGTGCAAACCTCACCTTACAAGTCGGTTTGTGGCGATGAGTTAGGCTTAAACCCACTTTCTGATATGGTATCAAAGCTATGGTTAAAGTCTATCCTAGCGATAGATAGCAAAAGGGTGTGTTGGAAGTCCCACATCGACTAGAGATAAGGCAAAATTATAATATATAAGTGGAGTGCAAAGATTTTGTGGGGTTGAGTTAGGTTTCAAGCCCACTTTCTAGAGAACATGTCGATTTAAACAATTCAAATGCTAACATGAAGCATGTTTGACACATAAAATTTTTAATATAATTAAACTAAAAGAATTATGTCCATTCATTTTCTTTACCATCTTCTTTTCCAATTTCTCTCTTTGGTTGGAACTGAAATATCAATCTGCTCAAAATAAAGTTGAGGTATAACCCTACTTCTCTCTTTCTCTCTTTGGTTTTTTTTTCTTGCTACCTCAAATTCGATTTTACTTCATTACCCACATGTTTGTTATAATTAGTCTTGTTAGTTAATTTTTCCAATAACAAATTTAAAAGGTATTGCGAAGGCTCATCACTTTTAATATGTGGTGATTGTTATTTTGCAGCTGTTATATAAATTTGATTCCTTTTTAAATCAGTGCTAGAAGTTGGAAAAAACATTAATTTTAATCTTAGTTTTATGAGGATTAAAGTTCAACTCATTTGTTTTGTTAATTGGGTTTAAAAGGGTTATATGAAATGAGTTTGTGAGATATAATCATGTATACTAGCAAACATGATGCGTGAAATAATATTATATATTGTTCCCATTTATTTTTTTACAAGTATTTTGAGGAGTCTTCTTCATTTATTGAGGTATATGAGACATGTTCTAGCTCTATCATTATTGACTTCGACAAATGACAATTTACATAAACTTCTTACATGATTTAAAGGTTTGACACATTTGACATTTACATAACCCAAAAAGGGTAATGTAATGGGTTTGTAGAGTCAGGTTATGTCTGAATTGGCAAATATGATGTATGGAATTGTACTATATGTCAATTTATTTTTCTCACAGCATGTGTGATCTTTACTTTTACTGATTTTTTTCCACACTTAAAACATGAGTCTTCTTGATTCAAAGATCTATATGATACACATGCTCTATATGAATCAATTGACTCAGACCAATGTCAATAATTATTGAGATTACTTAACGTTTTTTCTTAGGGCATATATGATGATCATCTTTTCTTGAATTTTGTTGCTCTATGACTGTTCAGAGATTAATTTGAATTCAATTAGAGCAGCTAGC

Gene Sequence:

>Vu_23443(-)