Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23553 LG5 66513086 66515675 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, positive regulation of nucleic acid-templated transcription, leaf development, leaf development, positive regulation of nucleic acid-templated transcription, cell differentiation, regulation of transcription, DNA-templated, response to blue light, positive regulation of photomorphogenesis, leaf morphogenesis, positive regulation of photomorphogenesis, positive regulation of development, heterochronic, positive regulation of photomorphogenesis, regulation of secondary shoot formation, regulation of transcription, DNA-templated, leaf development, regulation of transcription, DNA-templated, positive regulation of nucleic acid-templated transcription, regulation of secondary shoot formation, positive regulation of nucleic acid-templated transcription, leaf development, leaf morphogenesis
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, sequence-specific DNA binding
SNP Position Effect Amino acid change
A/T 66513091 missense_variant p.Glu2Asp
C/G 66513169 missense_variant p.Asp28Glu
C/A 66513178 synonymous_variant p.Thr31Thr
C/T 66513552 splice_acceptor_variant&intron_variant
T/G 66513736 intron_variant
C/T 66514268 synonymous_variant p.Gly209Gly
T/G 66514439 synonymous_variant p.Thr266Thr
A/T 66514740 stop_gained p.Lys367*
G/T 66514806 missense_variant p.Ala389Ser
A/T 66514872 missense_variant p.Asn411Tyr
A/G 66515219 synonymous_variant p.Ser526Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23553.1
MELQVHRSVRCENDNLRPCFLFPFYSPDLNTFHKTRSNNVQRESYKQADTRRSQKEFGADPRPICKICCFSLKTKREDLDQRLIPFKVLSVKQHGQTQILSAEARLWLCDLLSLLLLKGFLFLLRLGKALSRASDLDRDLSYFPWDKRTRRRPSGVRSLEKSRVCDMEEDEIQAQAVCKFPRVGNGRSDQYQEEEEEVDIRRRGIGGGGGGGGGGGGSDASTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLNNPFPDTPKQPSDEKRPTSGQRGVQPQAFDDADGDTNFLHQSQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARVRAAKDKGKDRDKEKEKEKENESGIAHHHHQHHNVNNPNHMSHTASFTELLTGGIGSTVTVNPTTTASPNGSSVHQIHEGHDEANIFNKGRQQQQQHWSSTVTPMDYFSQGGLLVGPSSSSARTQHQHQHQHQSSSGQFQLGHALPISPFSGENHSDQMQHFSFMPDHLNMPAVVTSSSSASQPSGGDNYNLNFSISSGLAGFNRGTLQSNSPSFLPHLQRFQPLDGSSNLPFFIGAPAPSSAPPTIDSNNNNNHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN*


CDS Sequence:
>Vu_23553.1
ATGGAACTCCAGGTTCACAGATCTGTGAGGTGTGAGAACGACAACCTCAGGCCTTGTTTTCTTTTCCCTTTCTATTCTCCAGACCTCAACACCTTCCACAAAACCCGATCCAACAATGTTCAAAGAGAAAGCTATAAACAAGCAGATACAAGGCGAAGCCAAAAGGAGTTTGGTGCAGATCCGCGACCCATTTGCAAAATTTGCTGCTTTAGCTTAAAAACAAAGCGCGAAGACTTGGATCAAAGGCTTATACCTTTTAAAGTGCTGAGTGTTAAGCAACATGGTCAGACTCAGATCCTATCTGCTGAGGCGAGGCTGTGGCTCTGCGACCTACTCAGTCTTTTGCTTTTGAAAGGCTTTCTTTTCCTTCTGCGATTGGGAAAAGCTTTATCAAGGGCTTCTGACTTGGACCGCGATTTATCGTACTTTCCGTGGGATAAGAGAACAAGAAGAAGACCAAGTGGGGTGCGTAGCTTGGAAAAAAGCCGTGTCTGTGATATGGAAGAGGATGAGATTCAAGCACAGGCAGTGTGTAAGTTCCCTAGAGTTGGAAATGGACGGAGCGACCAATACCAAGAGGAGGAAGAAGAGGTAGACATAAGAAGAAGAGGTATTGGTGGTGGCGGCGGCGGCGGTGGAGGAGGAGGAGGAAGTGATGCCAGCACAAACCATTTCCAAAGCAGCTGGCACCACTCTTCGAGAATCATTAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACTTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTCTCGGTGACCACTGCCATTCAGTTCTACGACCTTCAAGATCGCTTGGGTTATGACCAGCCCAGTAAGGCTGTGGAGTGGTTAATCAATGCTGCTTCAGATGCTATCTCAGAGCTTCCTTCTCTCAACAACCCCTTCCCTGATACCCCTAAGCAGCCAAGTGACGAGAAAAGGCCAACCAGTGGTCAACGTGGGGTTCAACCACAGGCCTTTGATGATGCAGATGGAGACACCAATTTCCTCCACCAGAGCCAAAACCAAAGCCAGAACCTCTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGTTCGGGCTTGTCCCTCTCTAGGTCTGAGATCCGTGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGTAAGAGCTGCAAAAGATAAGGGAAAAGATAGGGACAAGGAGAAGGAGAAAGAGAAAGAAAACGAGTCTGGCATTGCACACCACCACCACCAACACCACAATGTAAACAACCCCAACCATATGTCTCACACTGCTTCCTTCACCGAGCTTCTCACCGGTGGGATTGGGAGCACAGTAACGGTTAATCCCACGACCACAGCAAGTCCTAATGGATCATCTGTTCATCAGATCCATGAAGGTCATGACGAGGCCAATATATTCAACAAGGGAAGACAACAACAACAACAACATTGGTCTTCGACAGTGACACCTATGGACTACTTCAGCCAAGGAGGCCTCTTGGTGGGACCTTCATCATCATCTGCAAGAACTCAACACCAACACCAACACCAACATCAATCTTCTTCAGGACAGTTCCAATTGGGACACGCCCTTCCCATCTCACCATTCAGTGGAGAAAACCACTCGGATCAGATGCAGCATTTTTCGTTCATGCCAGACCACCTTAACATGCCGGCCGTGGTGACTTCTTCTTCTTCTGCTTCTCAACCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTCATCGGAGCTCCCGCTCCTTCTTCTGCTCCTCCAACCATTGACAGCAACAACAATAACAACCACCACCACCTTCAGTTCTCTCCCGTCTTCGATGGCCGCTTGCAACTTTGCTATGGCGACGGAACAAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAA


Promoter Sequence:
>Vu_23553::LG5:66511086-66513086(+)
AGTTATGATAATGATAGTAGTTTAATTTAATGATGGACGAGAGATTTCAAAAAGACAGTGGGACAAAACAATTGCCTCTTTGTTAGGGGGTTAATAATTCAATTTGGAATCTATGAAATGCAATTGGTTATTCAATTTCTTGGAGACAACTAATCAGGCTACATTATTAGACTAGGAGTGTTTATTTTCTTTCCATGTTTTAAAGTCATGACTTTTTTTTCTTTAAAAAAAATTTATATTTAAAAGAGTGAAATCTCAAGTAAGTATAAACTCTTAAAAAAAGTAAAAATTTATCCATATTATAATTTAGTTTTATCTCTAATCGATACAAAACCAAACTTTTAATATGATTCTGATATCATATTAGAAAAAAATTTAAAATATACTCAATCTAAAAAAACACGAGATTTATATTTTATTTATATATTATAAATTGATTTTGATTTTATCTCGAATGACGTGAAATTTCTACCAAAATACACGAAAGTAGTAAAATTTGTGTGAGATATCCCAACATCATAAAGTTTAGAAGGCGTGGTTGGTACTGTGAGAAGAGAGAAGATAGAAAAAAAATAAAAATAAAATTTTTTGATAATACAGCGCAGCCTTTTAAATTCCTTCCTATCTTTACCATGGTTGATTGTTTGAATTTGAAATTGATTGACCTTGGATGGAAGGAAAGGGAAGTTGTACGAAACATAAATGAGTTAGTTTATTTTACTTTCATTTCATTCATAAAAATCAGTTCTGGGGTCCCCTCTTTGGGTGACTTGGCTCGCTAGCTTTTAAATTTAATCACATCTTATATAATTCTAACTAAGCATTTGACAAAGAAAAACCTTTTTAAAATTCTTCTAACTTGTTTTTTAAAATTAAATTATATATCTATAAGGAAAGAAATAAATAATTGAAAGGCTTCCACGACAACAGAGAAAGGTCACCCACTTTAAAAGAAACCCAATGCCACATGACAAAGGGACCTAAAGAGAAAAACCTAAACAAGTAAGAGAAACAATAATGAATAAAGTGATAAACAATTCCATATGAGCCCAAACACAAATCTGGTGAGAAGAAAAAATCAAACAGAATTCTCTGAATAAGAACAAAATGATTCAAATGAAACTGGTTTTAATATTGACTTTAATTATTATTATATCGTGTTAATAAATATAATATTGATTGTATAATTAATGAGAATAATGAATGAGCAGAGTGGTAAACGAGTAAAATGAGGAAAAAGCAGGGACAAAGATGGAAGAAGCAGAGTTATACATACATAAAAGTGTGAAACGGCACAGTGTCTGCCGTTTCCCGATAAGCCCGGTGATTTTTGGAACAATCTCTTCTTCTATGTTCTTCTTCGCCTTCCTCTTTTCACTTCATGTTTCAGGTTTCGGCTTAACCCACTTTCAGTAGAGGTTCAACTTCGACCCTGTACTCGTACCTTCACCATAACCACAATTTTCTTTCACCATCCAAACACTCCTTTAGAACATTCTTCTGTCGCTCTTCTCTCACTCATTCTATAACGCCGGTTTTATGTTTCCATGTGCAGAGAGAGAAGCATGTGTGAGAGTAAACCGAGCTCAAAATTCAGCACCAAAACATGCTTATGAGCTCTGGTCTTGGATTTAAGGTTTTGTCTTGGACACAAACTTCTTTGTTTCGAATAGAGGAAAAGAAAACAACGACAAAAAAAGCTCAACTTTTTTCTTCTTCTTTCTTTACATTTCAAGGTGCACTTGACAAGAAAGCATGACCATTTGGAAAATTCAACAATTCCTGAAATAACACAACAAAGGTCTATTACTCTCCTAACCTTTTTTTTTCTTCGTATTTATACTGTTTTAATGAGTCTGAATTTCTTGCAAATAATGAAAGACTGTTTTTTTCTGTTGACAAAACGGTGGAACTGATCTGAAAATGCAATAATGTGTTTTAATGAGTTGATATTTGCAGGTTCTTAATTTCATTTTCCCTTTTGGTTTTTGTTTCATTGA


Gene Sequence:
>Vu_23553(+)
ATGGAACTCCAGGTTCACAGATCTGTGAGGTGTGAGAACGACAACCTCAGGCCTTGTTTTCTTTTCCCTTTCTATTCTCCAGACCTCAACACCTTCCACAAAACCCGATCCAACAATGTTCAAAGTAACAAGCCTCGACCTCTTTAATTTATGCTCAAGAGTAATTGCAGTTTCCAAACTACACGCCTCAATGAAAAAGGTTATTGTGGCTTCTAATGAGATTTCGTAATGTCTGCTAATTTTAAGGACAGGAGAAAGCTATAAACAAGCAGATACAAGGCGAAGCCAAAAGGAGTTTGGTGCAGATCCGCGACCCATTTGCAAAATTTGCTGCTTTAGCTTAAAAACAAAGCGCGAAGACTTGGATCAAAGGTAGGTACATATATACAAATATGTAGGAGTTTCCAAGCATAATTTGTGTTATACCTTTTCTTAAAGTTTCATGGTTTTTAATAAAACGTTTAGGCTTATACCTTTTAAAGTGCTGAGTGTTAAGCAACATGGTCAGACTCAGATCCTATCTGCTGTGTAATAAGTGAACCTGAGAATGTTCTGATGGCTTTATTTTATTTTATTTTTATAAACAAGTACAAAATAAATAAACTTCTCTTGTTTTGGGGATGATGGTAATAATTTTAATTTAATTTTTTTTTGTTGTTGTTGTGGGTGTGGTGTTGCTTTTGGTTTGCAGGAGGCGAGGCTGTGGCTCTGCGACCTACTCAGTCTTTTGCTTTTGAAAGGCTTTCTTTTCCTTCTGCGATTGGGAAAAGCTTTATCAAGGGCTTCTGACTTGGACCGCGATTTATCGGTGCGTAAATAAAAGGCCTTTTTATCACTACGCGGCCAAAGTACTCTCTGATTCTGAATCGTAGTCATCAATGCAAAGCACATAGCAACAACAAAAACCCCACCCTCTGTGCACTCTCTCATCCATTGGCACTTTGACTCTATTTTTCTTTTCTTCTCTCTCCAGTACTTTCCGTGGGATAAGAGAACAAGAAGAAGACCAAGTGGGGTGCGTAGCTTGGAAAAAAGCCGTGTCTGTGATATGGAAGAGGATGAGATTCAAGCACAGGCAGTGTGTAAGTTCCCTAGAGTTGGAAATGGACGGAGCGACCAATACCAAGAGGAGGAAGAAGAGGTAGACATAAGAAGAAGAGGTATTGGTGGTGGCGGCGGCGGCGGTGGAGGAGGAGGAGGAAGTGATGCCAGCACAAACCATTTCCAAAGCAGCTGGCACCACTCTTCGAGAATCATTAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACTTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTCTCGGTGACCACTGCCATTCAGTTCTACGACCTTCAAGATCGCTTGGGTTATGACCAGCCCAGTAAGGCTGTGGAGTGGTTAATCAATGCTGCTTCAGATGCTATCTCAGAGCTTCCTTCTCTCAACAACCCCTTCCCTGATACCCCTAAGCAGCCAAGTGACGAGAAAAGGCCAACCAGTGGTCAACGTGGGGTTCAACCACAGGCCTTTGATGATGCAGATGGAGACACCAATTTCCTCCACCAGAGCCAAAACCAAAGCCAGAACCTCTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGTTCGGGCTTGTCCCTCTCTAGGTCTGAGATCCGTGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGTAAGAGCTGCAAAAGATAAGGGAAAAGATAGGGACAAGGAGAAGGAGAAAGAGAAAGAAAACGAGTCTGGCATTGCACACCACCACCACCAACACCACAATGTAAACAACCCCAACCATATGTCTCACACTGCTTCCTTCACCGAGCTTCTCACCGGTGGGATTGGGAGCACAGTAACGGTTAATCCCACGACCACAGCAAGTCCTAATGGATCATCTGTTCATCAGATCCATGAAGGTCATGACGAGGCCAATATATTCAACAAGGGAAGACAACAACAACAACAACATTGGTCTTCGACAGTGACACCTATGGACTACTTCAGCCAAGGAGGCCTCTTGGTGGGACCTTCATCATCATCTGCAAGAACTCAACACCAACACCAACACCAACATCAATCTTCTTCAGGACAGTTCCAATTGGGACACGCCCTTCCCATCTCACCATTCAGTGGAGAAAACCACTCGGATCAGATGCAGCATTTTTCGTTCATGCCAGACCACCTTAACATGCCGGCCGTGGTGACTTCTTCTTCTTCTGCTTCTCAACCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTCATCGGAGCTCCCGCTCCTTCTTCTGCTCCTCCAACCATTGACAGCAACAACAATAACAACCACCACCACCTTCAGTTCTCTCCCGTCTTCGATGGCCGCTTGCAACTTTGCTATGGCGACGGAACAAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAA