Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23707 LG5 67906676 67907230 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, ethylene-activated signaling pathway, ethylene-activated signaling pathway, ethylene-activated signaling pathway, phloem or xylem histogenesis, positive regulation of transcription, DNA-templated, induced systemic resistance, jasmonic acid mediated signaling pathway, cell division, ethylene-activated signaling pathway, ethylene-activated signaling pathway, induced systemic resistance, jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, induced systemic resistance, jasmonic acid mediated signaling pathway, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, ethylene-activated signaling pathway, induced systemic resistance, jasmonic acid mediated signaling pathway, positive regulation of transcription, DNA-templated, induced systemic resistance, jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, induced systemic resistance, jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, ethylene-activated signaling pathway, induced systemic resistance, jasmonic acid mediated signaling pathway, positive regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, intracellular anatomical structure, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09159 Environmental adaptation   C 04626 Plant-pathogen interaction [PATH:ko04626]
SNP Position Effect Amino acid change
C/T 67906817 synonymous_variant p.Ser138Ser
G/T 67906820 synonymous_variant p.Ala137Ala
G/A 67906865 synonymous_variant p.Gly122Gly
G/T 67907194 missense_variant p.Leu13Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23707.1
MGTNKNYEEQSRLSFSQFQTEFLPFNENDPQDMVIYQVLNEANALSNTFHPHQRLHQPQLGLEPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAASESSFNNNNNNNNNNDAVSDCSGGSSCTTNNSTQVNGSRSESTSSTS*


CDS Sequence:
>Vu_23707.1
ATGGGAACCAACAAAAACTACGAGGAACAGAGCAGGCTCTCCTTTTCTCAATTCCAAACAGAGTTCTTACCCTTCAACGAGAACGACCCTCAGGACATGGTCATATACCAAGTTCTCAACGAGGCCAATGCTCTCTCCAACACATTCCACCCTCACCAACGACTCCACCAACCGCAATTGGGCCTCGAGCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAGTACGCCGCCGAGATTCGGGACTCCGCACGCCACGGCGCCAGAATATGGCTCGGCACCTTCCAGACCGCCGAAGAGGCCGCCATGGCTTACGACCGCGCCGCCTTCAAGATGAGAGGCGCCAAGGCTTTGCTGAATTTCCCAGCCGAAATCGTGGCTGCGGCCTCGGAGTCATCGTTCAATAATAATAATAATAATAATAATAACAACGATGCTGTTTCTGATTGTAGTGGTGGAAGCTCTTGCACCACGAACAATTCCACTCAGGTAAATGGGTCTCGGTCAGAAAGCACAAGTAGCACTAGTTAG


Promoter Sequence:
>Vu_23707::LG5:67907230-67909230(-)
AGCCTACGTCATCAAAGAGAAGATGACGGCACAGGTGACGTCATTACCAAATTGGAATGAGTTTGGAATATGTTGAGCTGTCATGGCTCCTTTTCTTTGCCATCGCTTTCCCTTTAAATTGCGAAATTACCCCTCCCGATTTTGAGGTTTTTTCATTTACGTTTTCTGCCGAGAAATTGATTGAGCTTCAATTTTGTAAAGTTGGATGACCTTTATTCTCGTAAAATAACTTTACCAACTCAGTATAACTTAACTTAAATTTAATATAACTATTATATTTAAAATTTAATAATTAAATCGTTATTTTATTAATTTATCTGTTTTGTTTCTGTTATTGTTAAGAAAAATGCTTTTATATAATCTGCTAATCTTAACTTAATCAATGACTCAAAAGATGTCTCGATCATGATTTTGATACCGTGTGCCAGATGGACATATTGGGGCTTGATCGATTTTCCAGATAAAATTGTTATGTCATTAATACAAAATTCTTATTAGTCAAATACGTTTTACACACTATAATGTATTATAATAGTCTTTTCCGATTAGTTAAACAGTGAAAAAACAATTTGGCACTCTCTCCAAAAGGATCATTATTATAGTTGAAAATTAGCTGCCCAAAGCGAAATTCCACCATCCGTTAATATTTAATTTATGGTTTTATCTCGTGTTACTTTTTTCATCAGTTATGAATATACATTATAAAAATTGTCGTGTTACTTACACATTGATACTATTTAATTATAATATTAGCATTGTTTATTACCACCATAATAAAAAAATATTCTTTTAACAACTTTTCTTTAACAGTGATTGATCAATTTCAAATAATTTAAAAAAAGATAAATTCAAACAGAACAATAAAATAATAACATGTGCTGTTATCAAAAAATTATTAAAAAAGTTATCAACATTCCAATAAAAAAAGTATACATGTAAAAGAATACATTAATTATCAACTTATTATCTAATATGTCAACACAATTTGTTAATATCTGATGAAAAATTAGAAAAGAAAATGAAATTATATATCTATAATTTTGTAAAGAATTTATTTACTCCTGTAAAATTTCAAAACCAAAATCACACTGTTACAAACAATAGAGTAAAATTTCAATGGAACCTTCACAATAATATAGCTGCTGCTTATATGAAAGACATTAAAAAAAGGAAAAGCTCCAAATAGAGCGATTAGATTGGCAGTCAAAGGTTGTAAATTTTCTGTCAAAGATCTGGTTCTCTTTACATGCCTAAACCTTAACAACCGAAAAGGTAACATCACACTAAATTGTCTATTCATTCATTTAAGAAAAGCTGGTATTAATCATCCGTACAAGACTTTGTGTTATACTGTATGGATGGGTTTCCACGAAAAATATAGCAGTTTGTAAATGTTCTATAGCGGTAAATAAACATCAAGAATGAGATCGTTTATGTGGATTCGTTGTTAAGAGAACTGCGAATCAGTTGTGGTTGTATGTGTTCAGAGAAAAAAATTATGAACTTATTTATAATTTATTTTTATTTATATAAAATTTCATCCAAGGCAAAATAGAAGTACTTAAGCTTTCAAAATAGAAACGAACAATAATGATTGTTGCGGCCAACTCCGAAAGCTATTTGTCTTCACTCTCATATTCAATTATCGAAGCAACCCACAAACACTATAAATGTGTGGAATAATTAAGTGGAAGAAATATTATTGAATAATAATTATGCAAATTAATTTTGAAGGGAAGAAGTGCAATATTGTAATTAAGAAGTAGAAGTGATGGCGATAGTAGGGCAAGGGCACGAGGGAAAGAGGAAGTAGGAAAGAAAGTGAGTCCCAAAACCCTTTCTCATCTGCCACAAAATATTCTATGCCTTCGCCTTTTCCCATTTATTCCATAGATATATGCCAAGTCCAAAACCACTTGACACACCTTTGCCAACTTCTCCTCTCTTCAAAAACCAGACAAACGCAGAGGAAACAAAAACAGAGACTCGCTCAAACAAAC


Gene Sequence:
>Vu_23707(-)
ATGGGAACCAACAAAAACTACGAGGAACAGAGCAGGCTCTCCTTTTCTCAATTCCAAACAGAGTTCTTACCCTTCAACGAGAACGACCCTCAGGACATGGTCATATACCAAGTTCTCAACGAGGCCAATGCTCTCTCCAACACATTCCACCCTCACCAACGACTCCACCAACCGCAATTGGGCCTCGAGCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAGTACGCCGCCGAGATTCGGGACTCCGCACGCCACGGCGCCAGAATATGGCTCGGCACCTTCCAGACCGCCGAAGAGGCCGCCATGGCTTACGACCGCGCCGCCTTCAAGATGAGAGGCGCCAAGGCTTTGCTGAATTTCCCAGCCGAAATCGTGGCTGCGGCCTCGGAGTCATCGTTCAATAATAATAATAATAATAATAATAACAACGATGCTGTTTCTGATTGTAGTGGTGGAAGCTCTTGCACCACGAACAATTCCACTCAGGTAAATGGGTCTCGGTCAGAAAGCACAAGTAGCACTAGTTAG