Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23859 LG5 69217002 69220087 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to abscisic acid stimulus, cellular response to abscisic acid stimulus, cellular response to water deprivation, regulation of reactive oxygen species metabolic process, regulation of proline metabolic process, regulation of transcription by RNA polymerase II, regulation of proline metabolic process, cellular response to salt stress, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, cellular response to abscisic acid stimulus, regulation of reactive oxygen species metabolic process, cellular response to water deprivation, cellular response to salt stress, regulation of transcription by RNA polymerase II, cellular response to salt stress, regulation of transcription by RNA polymerase II, cellular response to water deprivation, cellular response to water deprivation, cellular response to salt stress, positive regulation of transcription, DNA-templated, cellular response to water deprivation, cellular response to water deprivation, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, DNA-binding transcription factor activity, sequence-specific DNA binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein dimerization activity
SNP Position Effect Amino acid change
C/T 69217010 3_prime_UTR_variant
T/C 69217174 3_prime_UTR_variant
T/C 69217520 missense_variant p.Asp441Gly
A/T 69217522 synonymous_variant p.Val440Val
C/G 69217702 intron_variant
T/A 69217705 intron_variant
G/A 69217721 intron_variant
T/C 69217728 intron_variant
T/A 69218145 intron_variant
G/A 69218477 missense_variant p.Arg351Cys
G/T 69218478 missense_variant p.Asp350Glu
C/T 69218785 intron_variant
T/C 69219381 synonymous_variant p.Pro137Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23859.1
MAEEFQAAICGESWWNINSTRSVFPLISSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEDINNFISSDNSLSFLDVEKPQLRDSAGETGSILTDSTLQMIGFGMSSSASPNWNQSLLGSDFHSVLQGETGMDGDLPKNFSSAGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQGLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWSKISSLLKPSTPKQQLSGLHFSNDTSFWNGSAEALHDIRAGVFASSQAQYQTPKFEEKSNSSNTLLNKLKREESPDAISSAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYIKNGAPIQHQQDCDNLKESEGRKEDLRSRGLCLVPISSTFPVANESSVDFWTPTFGGAVIGR*


CDS Sequence:
>Vu_23859.1
ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCGACAAGAAGTGTGTTCCCTCTTATCTCATCAACATGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGTACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACGAGGTCTTGCGCAGAGGACATTAATAACTTTATATCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCTGAGGGACTCGGCTGGTGAAACTGGAAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAGCTTCACCGAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGGCATGGATGGCGATCTACCAAAGAATTTCTCATCTGCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAAAGCCTGAATTCCGTTGTTACGAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAATCTCTTCACTTCTCAAGCCCTCAACGCCAAAACAGCAGCTCAGTGGACTGCACTTTTCCAACGACACTTCTTTCTGGAATGGTTCCGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCGCAATATCAAACGCCAAAATTTGAAGAGAAATCCAACAGCTCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCGCCAGACGCAATCTCATCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTAAGAAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTGTTGAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGATCTGAGAAGCCGAGGGCTTTGTTTAGTACCGATTTCGAGCACGTTCCCGGTGGCTAACGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGCAGGTAG


Promoter Sequence:
>Vu_23859::LG5:69220087-69222087(-)
AAATACCATTTTTTGTTCACAAATATTTTCAGATAAATAAGTACATTTATTCTTTTAGGAATTTAAATATGTTTTGGACTCACTACATGTTAATATTATACTATACAATGTAATTGATGTCACCTAAAATGGAGGCTTAATGTTTTAGTAAATATATAAGTAATTAATTAATGTTTTGAGAAATGAAAACCAAAGATGTATTGAAAGAGTGAGATCGAAAATTGTTAATTTTATATGAAAAATATATTTAAGTCTTAAAAATGAAATAAAGCTTCTTTGGTCACATGATAAAATAATGATGTTACATTAAAAGAAGAGATATTGTACGATTTGTTAATTTACCTAATCGAAATAATCGTGTAAATAAAATATACACTAAGGTGTAAGTCAAGATGATGAGATTATGTATGACAATCTAATGTGAAAGACATAGAACAAAAGCTGAACGCCAAAGAGTAGGGGTTGACATTGATTTAATTACGTATGGCTTGTCCATTTTCTTCATTTAACAAGTATTTGACATCAAACACAAGTATTCTGCAGCAGTTGAAACTATCTAAACTAATATGTATTAACTACCTTAAGCCAAATATGTTTTCATTCTGCGTGAAATATTGTCTATCTCAGCTAATATTTAAGGGAACACTGCCATTGTTGACATAGAATCTGGTCCATGCTACAGTTATGTTAGGTCAAGCATTAGTTACATACTTGTGTTTTAGTTTCACCAACCCACGTGATGCACACGCGCCTTCTTACAACGTCATGCCCACCCAATGTTCATTTTAAAATTCAAATATTAGTGAATTTTCTCACCTACTAGGTATTTTTTATTCACCTTGCTATTGTGGTACTACAAAGTCTTCAATGATAAACATATGGACCAATAGATGGTCCTCAACCTTTTGAATTATTATAATCGTGTATCACATCCACAACTTCTGACACAAAAACGGAGGACTCAAAGTAGGAAATCGATAAATCCTTGTACGATTGATATATATTTACTTAATTACTGTATTATTTGATAAATTATTAGTTTTTAATTTTTTTGTAAATTTCATAGTGTTAGTTAAGAACTGAATTTTAAGCTAACTCAACTTCACAAAATTAAGATGAAATTTACACCCACTTATATATTTTAAATTAGTCTTATCTTTAGTTGATGTTGAACTTTCAACACACCTCCTCACGCCGAGGTATATACATCTCGAACGTGAGACTAGACATTAATAGATGGTTCTATAATGGACCGATAGCGGGTGAAACAATGTGTTCAACAAACAATAAATATAGCTAGGATAGACTTGAGTTTGATACATGTTAAGAATTAAACTTTAAGCCTAATTCAACCTCACAAAATCGGTTTATAAGATAAGATTTGCACCCATTTATATATTTTAAATTGGTCTTATCTCTAGTAGATGTAAGACTTCTAATATTTTTATTCTACTCAATCTTATTTTCTAAAACGTATGGAACCACTTGTTGATGAAAATTTTCCTTCTAACTGTGTTTTTATTGACAACAGTTAGATTTGATATCCTAGTTAAAAATTTAAAACTCAGTTCCATTACAACATAAAATATTAAATGACATTTTGAACCACAGTTTAGAAATCAGGGAATTTGAACCACATGATCTTATTCATCCCTTGTCACGATCATAGTCAATACCATCATACTCACGAAACTTTACACATAAGGAACACAATTGTCCACAAGTCATGTATTAATTATAATTCTTCGTGAGATACTACTGTTACACATTTTTTTAAAGAAAAAGTAAGACAGAGAGAAACAAATCCAGGACAAATAAACAAACACCAATTAATTATATTTTGAAAAAGAGAATTAGAATTGGATTCAAAATTCTCTATTTCTCTTTTTTTCATTTGTCAAATCATCCCTTGTAATGTCAACCGCGTTCCGGTAATCTCCTTAGCCGTACCCTTTCAACCGTTCCATATATAAAATGTCGCAAGCTCCCACACCTTTCAT


Gene Sequence:
>Vu_23859(-)
ATATACCAATAAGCTTCTGAGTGTGACTGTGTTAGAAGATCTCAAAGATACAGGCAAATCTGCAAATTCTTAAGGACTCAGATTCAGCAGATAAACACGTGCAGCGTAAGTCTTGCCATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCGACAAGAAGTGTGTTCCCTCTTATCTCATCAACATGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGTACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACGAGGTCTTGCGCAGAGGACATTAATAACTTTATATCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCTGAGGGACTCGGCTGGTGAAACTGGAAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAGCTTCACCGAATTGGAATCAATCTTTATTGTAAGTTTACAGAATAGGGTATCTACCAAAACAAATATATGTTGCTATTAGTACGGTCCAAAACTTCCACCAAGGAAGCAAAAGTTGTTTTTCTTTAGCTTTTTCTTGTTGTTTCTTTTGAAAAAGGAACTTCATCTTATCAAGCATATCCTTATCTTTTTGAATTTCTTTCTCTGCAGAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGGCATGGATGGCGATCTACCAAAGAATTTCTCATCTGCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAAAGCCTGAATTCCGTTGTTACGAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAATCTCTTCACTTCTCAAGCCCTCAACGCCAAAACAGCAGCTCAGTGGACTGCACTTTTCCAACGACACTTCTTTCTGGAATGGTTCCGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCGCAATATCAAACGCCAAAATTTGAAGAGAAATCCAACAGCTCCAATACTCTATTAAACAAGGTTATTAATTAATTAACGGTTTCCAAATTTGTAAATATATCCACTGCTGGCTAGCTAGCTCTAGGTTTTTTTATTTCTTTGTGGGTTAAAAGTGATAATATCGGTTAAACTGCAGCTCAAGAGAGAAGAATCGCCAGACGCAATCTCATCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTACTGTAGTGTTATATGTTTATTTTTCATTTAGTATCAAAGTTTTTGCTTTTTCTTCATTTTATTCTATATATGTGCGAGACTGCTAAACCTTCATAATAATATATAACTATTTAGAATTGATCAAGCTGATATGCATATATGGACAGGTAAGAAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGGTAAATTTATGTATGTTCTTAGTTTCACCTTTTTTCCCCTTCACAGCAGCTTTGTCAATGATATGGTAGAATTTGAACCTTTACCCTTTTAGACTCTGAAGGGTAAAAACTAACCGGATATTATACTCTCGTTGATTTTAATAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTATGTTTCCATTGTTCTTACTTTGTTTTAAAGAAAACCCTAATTATACACACACACACATATTTTCTTGGCTCATATATAATATGTAAGTTGTTCAGAAGGAAAGTTAAGCGACAAGGTTTTATAAGTGTTTAAATATAGTTTTCGTTCTTAATTTCAGGTGTTGAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGTACACGATAATTCTTTTATTTTATCTCACGTTTCAAGCAACACACACATGCACCTGGCACATCTAGATTCACTGCAGTCAAAATCGCCGTAGTGAATGATTTGTTGAAACATAAAGCATTTGATAATTCTATTCTGGTTTATCTAATGCATTATTGGATGGTTCAACACTATTATACTGTCACTAACTACATTAAATAAATATCATTAATCAATAAATTTTTGAATGTCTTAGATAGAGATGGATTAAGATAATGAATACATGAAAATAGTGAACCGTTTATGTTATGTACACAACATGAGTAAATGTAGTGAATGGGTCCATGCATGCACTGAATGTAAAGATTTTTGTTTGAAATATTTGTATATGGGTGTGTTTGAAGGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGATCTGAGAAGCCGAGGGCTTTGTTTAGTACCGATTTCGAGCACGTTCCCGGTGGCTAACGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGCAGGTAGAGAGCAGTGGAGAAGTGGTGACCATATAAAAACTATATATTTATGAGTGTAAAGTAAAGGAAAGAAGAAGAAGACACGATTGTTAAAGAGAAAATTAAAGGTGAAGATAAGAAAAGAGAAAAAGGGGAAGGAAAGAAAAGGAATGTGAGTGTTGATTCAAAGAGGACACGTAAAGCAGACTGATGTAGCTGGTAAATGATTAGAGACTACTGGAAGAGAATAATAGATTAGCTAGCAATAGTGTTTTAATTATTAAAGTCGATGAGTGGCAGGAACAAGTGCTAAATTCAGAGGCATTTGACACGTTAGATTACAGAGTTTTTGTTGCTGCTGTTCTTAGAGTCACTGTTATATGCCTGAATTTAGCAGATGGGGCTACCCAGTTAAAACGCCTTTTGTTCCTGCTGATCGATGTATATCTATCTATATCTATATTGAATCTTTAAAGGGGTGTTGCACCAACTTTGATTAGTTT