Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23910	LG5	69604068	69609287	putative cinnamyl alcohol dehydrogenase 1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	lignin biosynthetic process, lignin biosynthetic process, lignin biosynthetic process, lignin biosynthetic process, lignin biosynthetic process, lignin biosynthetic process, lignin biosynthetic process, lignin biosynthetic process
Cellular Component	located in	cytosol, chloroplast
Molecular Function	enables	sinapyl alcohol dehydrogenase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, cinnamyl-alcohol dehydrogenase activity, zinc ion binding
Pathway	B 09110 Biosynthesis of other secondary metabolites	C 00940 Phenylpropanoid biosynthesis [PATH:ko00940]

SNP	Position	Effect	Amino acid change
A/G	69604094	synonymous_variant	p.Leu9Leu
T/G	69604153	missense_variant	p.Leu29Arg
C/A	69604156	stop_gained	p.Ser30*
C/A	69604583	missense_variant	p.Phe172Leu
T/C	69604601	synonymous_variant	p.Asn178Asn
C/T	69604646	synonymous_variant	p.Tyr193Tyr
G/A	69604659	missense_variant	p.Glu198Lys
C/T	69604669	missense_variant	p.Ser201Phe
C/T	69604673	synonymous_variant	p.Thr202Thr
C/T	69604749	missense_variant	p.His228Tyr
T/C	69604860	synonymous_variant	p.Leu265Leu
C/A	69604882	missense_variant	p.Thr272Asn
C/T	69604903	missense_variant	p.Ala279Val
G/A	69604914	missense_variant	p.Val283Ile
T/C	69604959	missense_variant	p.Phe298Leu
G/T	69605204	missense_variant	p.Gln379His
G/A	69605372	intron_variant
A/G	69605669	missense_variant&splice_region_variant	p.Ile381Met
G/T	69605795	synonymous_variant	p.Ala423Ala
C/A	69606050	downstream_gene_variant
A/G	69606051	downstream_gene_variant
G/C	69606096	downstream_gene_variant
A/C	69606110	downstream_gene_variant
C/A	69606140	downstream_gene_variant
A/C	69606147	downstream_gene_variant
T/C	69606185	downstream_gene_variant
C/T	69606190	downstream_gene_variant
A/G	69606268	downstream_gene_variant
T/G	69606461	downstream_gene_variant
C/T	69606729	downstream_gene_variant
T/G	69606756	downstream_gene_variant
A/G	69606870	downstream_gene_variant
G/A	69607155	downstream_gene_variant
C/T	69607197	downstream_gene_variant
C/G	69607240	downstream_gene_variant
G/A	69607256	downstream_gene_variant
A/C	69607291	downstream_gene_variant
G/T	69607469	downstream_gene_variant
A/G	69607518	downstream_gene_variant
G/A	69607530	downstream_gene_variant
A/G	69607557	downstream_gene_variant
T/C	69607729	synonymous_variant	p.His491His
A/C	69607975	missense_variant	p.Lys543Gln
T/A	69608142	downstream_gene_variant
C/G	69608165	downstream_gene_variant
C/G	69608199	downstream_gene_variant
G/A	69608281	synonymous_variant	p.Leu595Leu
C/G	69608289	missense_variant	p.Ala598Gly
T/G	69608295	missense_variant	p.Val600Gly
G/C	69608450	missense_variant	p.Glu652Gln
T/A	69608741	missense_variant	p.Phe710Ile
A/G	69609008	synonymous_variant	p.Glu761Glu
A/T	69609143	3_prime_UTR_variant
C/A	69609174	3_prime_UTR_variant
G/A	69609198	3_prime_UTR_variant
A/G	69609202	3_prime_UTR_variant
G/A	69609257	3_prime_UTR_variant
T/A	69609272	3_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23910.1

MGNGGFSTLTLILCYAMATVSFLPSTNTLSCSYLKFWGNDAWLQLRGDAEVSASEIQVTSNREGKNNSYSAGRVTPVITMHLWDKSSGKLADFTTHFSFTVYSNEIQFGDGFAFFLADPGLPLLNNITEGGGLGLVDGDRVLNSTQHSFVAVEFDTFQNPWDPEDPHVGMNFNSMKSNVTASWLAIMSQDVVYNCSIEYNSTTFCLTASFTGLNYKKYGRIQNSLSYHVDLRKHLPERVMVGFSAAAGYYFEDHILKSWSFSSGLEIEIGDTSGDDNKAVEWVGIGIGLVVFLGLACFLMWRRIKGKEKVLEIDLKMDDEFQKGIGPKRFRYNELESATSKFSESEKLGQGGFGGVYKGFLKDLNSYVAIKRVSRESKQGIASGRKAIDLKAQDGKVSIVEWVWEMYELGEILKVADPKLCGAFDDEQMKRKNMSSKGVDEQCLGWAARDASGVLSPYKFSRRNLGNEDVHIKITHCGVCYADVIWTRNKHGDSKYPVVPGHEIAGIVTKVGPDVHRFNVGDHVGVGTYVNSCRDCEYCNEKKEVLCTKGSVFTFNGVDFDGTITKGGYSSYIVVHERYCFTIPKGYPLASAAPLLCAGVTVYSPMVRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSLSKKEEALTLLGADKFVVSSNQEEMKALAKSLDFIIDTASGDHPFDPYMSLLKPYGVFVLVGFPSEIKFSPASLNIGSKTFAGSVTGGTKDIQEMIDFCAANDIHPRIEVIPIEYVNEALERLVNRDIKYRFVIDIENSLKEN*

CDS Sequence:
>Vu_23910.1

Promoter Sequence:
>Vu_23910::LG5:69602068-69604068(+)

AAAACTGAACATTAATACATTAAAAATTTAAGTGTGAATCTAAATTTTATATTGGATAAAAATAAAAAAGTAAAGCATTGTAAAAATAAAAATCCCATTAATCTATTATTTTAAGGTTTTGAGTAGAAAATGGTGTCAATTTTTATATAATTAAACTCAGATCTTATTAGAGTTTGTATCTTTTCTGTAAGACTCTTCTTAATATATCCAACTTAGATCTCATTGAGTTTTATTTATTTTCATTAATCAAATATTTATAGTTAAAATTATTATGGAATATAGAAATGAAACCTGAATCTTTAAAGTCCACAAAAAAAATGTTGTTTAAAACTATACTGGTGTTTCGTGTTCAGATAACACAAAGAATGGTAAATGAAAAAAAAAAGTAAAAGAGAAGAATTTAATAATAATATTAATATTACTATATATATATATATATATATATATATATATAATTATTTATATACGTTTAAATCTCTTTATTTTTATCTCAAAAAATTTTAAATTAAACGATTCAAACTTTATTTTCAAATTTAATTTATAATTGAAAGTGAACAAAGCTTTAACTCTTTATATTTATAGGAAGGACTATTTTTTTAAACATGGTTAAATAATAAATATTAAGAATTCTTTTAATAGAAAGCAATACAAAACGAAGGTGATTGTCTTTGTGTTTAAGTGGTTTCTCTGTAAAAAAATGATGCCTTTCACCTGCAATTTGTTGGTAGCGAGAGCATAAGCAGCGACTTATTCAAAGATTTCCCGAACCACGATGCTACCCAGCAAAGAGTCATACTTTTTCTTATGTTGTTGGTTAAGAACAATGTCATGAGTTTATGCCCAATTCATAGCTGTCGAAGGTAAACGTTTCAACTTTGGTATCATCACACCACTTTAAACGTTTCAACTTTCACAGATAACAACAAAATGAAAATTTCACATTAAAGTGATATTCTGAACTATACTTATATGTGAAATTTTTTTAGAAACTAAAATACAAAAAAAAAAGTTATATAAAAATACAATTGCATTTATAAATATACCTTGGTTCTTAATATCTAAAAATAATGCAAGAGATTTAAAATGAGACATTAAATATTCATTAATAAGTTTTTATATATAATCACATAAAATATTAACACTACTTTTTATTTTAAAATTTTAAAGTAATAAATTAATAGATTTTCAATCTTATATAACGTTTATTTTTTTAATTCTATTTAATATTCAAAATCTTAAAATAATAATGAATTAATAAATCTTTAATTTTATATAATATTTTATTTTTTCATTTTTTTATTTTTAATTTAATGTAAAACTTAGACACACTTAAAATTCTAATAAGTCCCGTATCATATCTAAAAAAAGAAATTATTATAAGTTTGCACATCATTAAATGAGAGTTTACATCAGTATTGACCCTGCCCAGATGAGTTTCTTTACCCTGAAATCTACTTAACAAATAAAACTTAATTGGGCATCTTGATTGCTCAGGGCTATGATTAATGACAGCTTTTAACTGTTCTTATTTTAACAATTGAGAGACAATTGTAAAACTCATGTTATATTTTTGAAATTGGACAAAACAAAAACATGTTAAACTTCTTAAATTCAATGTTTCATTGAAAAAGAAAAAAAGAAACAGCAAATGCAAGGTACACCATGGTGGCATCATAGGGAATGCTCAGATACGATAAAGAAAAAAAAAATTAAGTTTAAAGATAACGGTGAAAAGGCTTCACGCGAATATAAAGGTTGCATCATGAAAGCTAAAAGACGTAGTCACATCCAAGCATGACATTGGCATTGTGCAAGTTACTAAGTATTTCGATTGTTTCCAACGTTGGTTATCAAATTTTAAACCCGAATATTGTGTCGTCTCTTCCTACGAAGCACGTATGAATATCAGACAAATCATATAAAAAAAATATAAAAGAAATTACTGCATATATAATACATGAAAAGCCTTTGATTGATACCAAAAGTGACTGACTGGCACA

Gene Sequence:

>Vu_23910(+)

ATGGGGAATGGAGGTTTTAGCACACTAACTCTTATCTTGTGCTATGCAATGGCAACCGTTTCATTCCTCCCTTCTACAAATACACTATCGTGTAGCTACCTCAAGTTCTGGGGAAATGATGCATGGCTGCAACTGCGAGGAGACGCAGAAGTTTCAGCTTCAGAAATCCAAGTCACATCTAACAGGGAAGGAAAGAACAACAGTTACAGTGCTGGACGTGTCACACCTGTTATAACGATGCATCTCTGGGATAAGAGTTCTGGGAAACTTGCAGACTTCACTACCCACTTTTCGTTCACTGTTTATTCAAATGAAATTCAGTTTGGAGATGGGTTTGCATTCTTTTTGGCGGATCCTGGGCTTCCCCTTTTGAATAACATCACGGAAGGTGGTGGTCTTGGCCTCGTGGATGGTGACAGAGTGTTGAACTCGACGCAACACTCATTTGTGGCAGTGGAGTTTGACACCTTCCAAAATCCATGGGACCCCGAAGACCCTCATGTAGGTATGAATTTCAACTCTATGAAGTCCAATGTAACTGCATCATGGTTAGCTATTATGTCACAAGATGTGGTTTACAATTGTAGCATTGAGTACAATTCCACCACTTTTTGTTTAACTGCTTCTTTCACTGGCTTGAATTACAAAAAATATGGTCGAATACAAAATAGCCTTTCGTACCATGTTGATTTGAGAAAGCACTTACCAGAGAGGGTCATGGTTGGCTTCTCCGCAGCTGCGGGATATTATTTTGAGGATCATATTCTGAAGTCATGGTCATTTAGTTCAGGCTTAGAAATAGAAATTGGTGATACTTCCGGTGATGATAATAAAGCAGTTGAGTGGGTAGGAATTGGGATAGGTTTGGTGGTTTTCTTAGGATTGGCTTGTTTTCTGATGTGGAGAAGGATAAAAGGGAAGGAAAAAGTGTTGGAAATTGATCTAAAAATGGACGATGAGTTCCAAAAGGGAATAGGACCCAAGAGGTTTCGATACAATGAACTGGAAAGTGCAACGAGTAAATTTTCAGAGTCGGAGAAGCTTGGACAAGGAGGCTTCGGTGGCGTGTATAAAGGTTTTCTGAAGGATTTAAACTCCTACGTTGCCATCAAGAGGGTATCGAGAGAATCAAAGCAGGGGGTAAAGGAATATGCTACTGAAGTCAAGATCATTAGCCAGTTGAGGCACAAGAATCTGGTGCAACTCCTTGGTTGGTGCCATAGAGAAAAAGATCTCCTTCTTGTCTATGAATTCATGCCAAACGGAAGCTTAGATTTCCATTTATATGGGAAGGGCTTCTTGACGTGGCCAGTGAGGTATAACATAGCTCTAGGCTTGGCTTCAGCGTTGCTATACCTGCAAGAAGAGTGGGAACAATGTGTTCTTCACAGGGACATAAAATCAAGCAACATAATGTTGGATTCAAGCTTCAACGCTAAGCTTGGTGATTTTGGTTTGGCTAGGTTGGTGGATCATGAAAAGGGGTCGCAAACAACGTTTATAGCTGGAACAAGGGGATACATTGCACCAGAATATGTGACTACAGGGAAAGCTTATAAGGAATCTGACATATACAGTTTTGGTGTTGTGTTATTGGAGATAGCTAGTGGAAGAAAAGCCATTGATCTAAAGGCACAGGATGGGAAGGTATCAATAGTAGAGTGGGTTTGGGAGATGTATGAATTGGGAGAGATATTGAAAGTTGCAGACCCAAAACTGTGTGGAGCGTTTGATGATGAACAGATGAAAAGGTTAGTGGGTATAGGTCTTTGGTGTGCTCATCCAAATTACAGATTCAGGCCTTCTGCCATGCAAGTCATTCAAATGCTTAAATTTGAAGCTGAATTGCCAACTCTGCCAGAGTGGCTACCTGTTCATAATTTCTATCCTTCAACAGTAAAAATAAATTTTTCATCGTCTTCAAACACTGTAACTATCCAGGAAATTTTGTAGAAGAAACTATTCATATGGAAGTTGCTCGCCATTTTACTTTGGAAAAACTTAAATGTTTTTGTCAATTTTTTTACTGAACGTTCTAACACAAATAGTATAATAGTTTTTATTTTAAAATACAAAATAATATTTTCAATTAGTTTGCTTTAAAAGCCAAAATATTTTATGTCATAACTTAGCTTTACAGGTTATGGATTCTTCCTATCTCGATCATTTCCGTCAGATGTGAGTCACCTAAATGAACCTTAGAAAGATAAAAACACTTTTCTATAATTAAATTATTCTTTTCGTTTTATGAAAAAATATTTAATATTTATATTTTTAAATTTCATTATTTTATTTAAGTTTTATTAAATATCATATGTTTGAATAAATAAAAAGACGCATATTATGAAAATGCTAAAAATAAATTACATGTTTATTTAAATATCACATAAGGCTAGCGTCGTTAATAAAATGAAAAATGTGAATATATATATATATATATATATATATATATACTTTATTAATTATAATTTTAAACATTTTAATGATTTAGTTTAGAGTTCAGTCTTGCTTAGTTTATTTCTTTTGTGTTAATATTAATTAATAAAATCTGAATGTGAAAAGAATCCTGGGTTTTGATCAAATTGTTTTTAATTAATTCGATTGCTTATAAAAGTAATCGTTTGAAAATCACTATGAGTCATTTATTTTACATCTTCATCCCCTCCGATCCTCACATTCGTGGATCCCTTACTCAACACACCACAGGTGACTCTCTTATTGACTCTTCTTCGCGAACTATTACAATTTACAAAACTATTTTGGAATTTTTTACAAAAGCTATTTCGGATATGGATTTGTTGTATAAGCAAGGTTACTACCATTGTTGAATTGAAGAAAAGGGTTAATATGTTCGTCTGTTGATGTATCGTTAAATGATTGAGTTAATTTAATTAATGAATTAGGTAATTCGTTGCCTTCTTATATCCGTTATTGTCAACTCAGCCTGTGAGTTTTGGTCTTAACACTTGCAAGCATGAAATAATTATGTCAAATACAGTTTTCGTGATTGAATATCGATGACTAGGGATTTTTCTTGCAACTACAAGCATATCAATTCATGGACATTTTTCCATTTCTATGGCATGTGGCATTCTCTATCTATCCCTGACATCTCTGATTTGTTAGAAGCTACATTTTATCGGCACATGAGGATAATAATAACCTGTAAATTCTTGCTGAACATTCCTGTGTTTTAGTTTCATGAAAAGTAAACTGATAGTTAATTGCGTTATGGTGGAGTAGAAAAAATATGAGTTCCAAAGGTGTTGATGAGCAGTGCCTGGGATGGGCGGCAAGAGATGCATCCGGAGTTCTATCACCTTACAAATTCAGTCGCAGGTATCTTCCTCTTAGATACCCCTTTATACAATGGGCTGCTGGAGTTTATGTTTTCTGTAAATGGTCATTTTTTTTTCATGGCAACCCTATTTCCAAAAGTAACTAGTTGCGATTCCATGTTGGGTGCCACATACTGATGTCAATTTGGTCATGTATGTATTTTTGTTATCATTTTTGTCTTATCTTGAGATAAAATTCGACTTTCTGACCTTTTTCTTATGATAATATGATTGTTAAGGAATCTTGGGAACGAAGATGTTCATATTAAAATTACACACTGTGGTGTTTGCTACGCTGATGTAATTTGGACAAGGAATAAACATGGTGACTCAAAGTATCCTGTTGTGCCTGGGTATGCACGCTTTTTTTTTTCGTGTGTATGGATGAGTCGTTGAGAATCCAATGTACTTTATCTAATCTGCTTATGTTTTTTTTTCGTATCAGTCATGAAATTGCTGGGATTGTGACAAAGGTTGGCCCTGATGTCCACCGTTTCAATGTTGGTGACCATGTTGGAGTGGGGACTTATGTCAACTCGTGTAGGGATTGTGAGTATTGTAACGAAAAAAAAGAAGTTCTTTGTACCAAGGGATCAGTCTTCACTTTTAATGGTGTTGATTTTGATGGTACAATAACAAAAGGAGGATACTCAAGTTATATAGTAGTCCATGAGAGGTAAACTTAACAGATGGCTAGATCCTAATTGTGAGTTTTACAATGTCTTCTGCTCTGAATTTTATCATAAGCTCTGAATGTACCCTTGATTTTATACTTACTACAGATATAGTTCTGCTTCATGTCATATTTAGTGTTGCTTCTGCAGGTACTGCTTCACGATACCAAAAGGCTATCCATTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGAGTTACTGTTTATTCTCCGATGGTGCGCCACAAGATGAATCAACCTGGAAAATCTCTTGGGGTGATTGGTCTTGGTGGCCTTGGTCATATGGCAGTGAAATTCGGAAAGGCATTTGGTTTGAGTGTAACAGTTTTTAGCACTAGTTTGTCCAAGAAAGAAGAGGCACTGACCTTGCTTGGTGCAGACAAATTCGTTGTTTCATCTAATCAAGAGGAAATGAAGGTAAGCGTAACATGAAGCATCTACTCATAACATTTTCATCAGATCATGAACAAAACACCGATATTGACAGACCCTCGTACTTCTTTGTCGTCAAAATTGGTGGTGATTCCTATATAGGCGTTGGCTAAATCGCTGGACTTTATAATCGACACAGCATCTGGTGATCACCCATTTGATCCTTACATGTCACTTTTGAAGCCATATGGTGTTTTTGTCCTAGTTGGTTTCCCTAGTGAAATCAAATTCAGCCCTGCAAGCCTTAATATAGGTATGTTTGTTTTGAGTCATAGTTTTGTAGGAATTATCAGTTATTCAATTCGGGGAATTCAATTTATTGATGCAGTGGAACTGCATATAAATATGCATCTTCTGTTTGACAGGATCAAAGACTTTCGCCGGAAGCGTTACAGGTGGTACAAAAGATATACAAGAGATGATTGACTTCTGTGCTGCAAACGATATTCACCCAAGGATAGAGGTGATTCCAATCGAATATGTCAATGAAGCTCTTGAGAGGCTCGTAAATAGAGACATCAAATACCGGTTTGTAATAGATATTGAGAACTCCCTAAAAGAAAATTAAGTTGCTTGCAAAACCAGACATGATTGGAGTTTATCATGTTAAAAAGGTAATGATGCTTAGTGGTCATATTTACTTCCATAGACATGGTTCCAATGGAGCGTTCAGTTTAAATAAAATGTTGAATTTTCTTTAACTGTTTTGTGTAACTGATATGATATGATTATTAGAAGATTTTTGGTCATGGAAATT