Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24005 LG5 70378492 70380606 PREDICTED: G-box-binding factor 4-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of metabolic process, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
G/T 70378580 3_prime_UTR_variant
A/C 70378784 3_prime_UTR_variant
C/A 70378800 3_prime_UTR_variant
T/C 70378828 3_prime_UTR_variant
T/A 70379192 downstream_gene_variant
A/C 70379665 upstream_gene_variant
G/T 70379826 upstream_gene_variant
A/G 70379953 upstream_gene_variant
A/G 70379954 upstream_gene_variant
A/T 70380179 upstream_gene_variant
G/A 70380510 missense_variant p.Ser4Leu
A/T 70380533 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24005.1
MASSKVVVTTNPDVAPPQSSISSQVWDEVVGGAESQDMAISLHDLLLTSVAGNDAVPPSHGGRGKRKAVEEAVVDRATLQKQRRMIKNRESAARSRERKQAYTVELESLVTLLEEENARLLKEEAERRRQRFNQLMECLIPVEEKSKPRRMLRRVNSAQW*


CDS Sequence:
>Vu_24005.1
ATGGCATCGTCGAAGGTGGTGGTCACGACGAATCCCGATGTGGCGCCGCCGCAGAGTTCGATTTCGAGCCAGGTATGGGACGAGGTGGTCGGGGGCGCTGAGTCTCAGGACATGGCAATCAGCCTCCACGATTTGTTGTTGACCTCCGTTGCCGGAAACGACGCCGTTCCGCCCTCTCACGGGGGAAGGGGAAAGAGAAAGGCCGTGGAGGAAGCCGTCGTGGATAGGGCTACTCTTCAGAAACAGAGAAGGATGATAAAAAACAGAGAATCTGCCGCTAGGTCCAGGGAACGCAAGCAGGCTTATACAGTTGAGTTAGAGTCTTTGGTTACACTTCTCGAGGAAGAGAATGCTCGATTGTTAAAGGAAGAGGCTGAAAGGAGAAGGCAGAGGTTCAATCAGCTCATGGAGTGTCTTATTCCAGTTGAGGAGAAGAGTAAACCAAGACGAATGCTTCGGCGAGTGAATTCAGCCCAGTGGTGA


Promoter Sequence:
>Vu_24005::LG5:70380606-70382606(-)
TTTTTATTTTGGGTTAATCTATTTTTTTTATGTGATCATATAAAAAAAATTATTAAAATTTTGAGAGTTTTTTCTTAGATTTTTTCTCTTCGTGTTATAGATCTCGCTTAATCTTATAAAATTGAAATCTATACATAATATTTCATGTAAATATCTTAAATGTAAATTTATGTTTAATATGAAAGAAATCTCATGTGACTAAAACATTTATCACTTTTTGTGTCATTTTCCTTTTTTTTACTAATAGAGAAGATATTTTTCTTCTTCTTGGATATTTTAGGCTTAGATTTAAAAAAAAAAAAACTTATAGGAAAATTTTATCTCTTTTGATTGACATACTTAATTCATAAGAGGAACAAAAGATGTAAGCCTTCATATTAAAGTAACTTATAAAATTATTATTATTATTATTTACACTCACTTTTTTAACAAAAATTCATACAGTTCCACGCAGCTTTATCAGAAACTTTTAAATGATAATATTCTTACCAAAATTATCATTCATTAATAAGCTAATGATCAATGGAATTTAAAATATGAAAAATCAGGATAAAATTATTTGTTTCACCAAATCATTATGAAGAAAACTATTCTTATTTTATATAATTTTTATTAATTATATAGAAATAATTTAAATATTATTTATTATATATTATATCAAATTACATAAAATTAAATATTTTAAATATTTAGAGATTAATTTTGTACAAAAGGTGGGTACTGATTATTATTTTTAATTCATTTTACTATTCATTAGTTTTTTCAATCATGTTTCAATTGTTTGTTAGCTTTGCATTATAATGTTAAAATATTATTAAAAGTAAAATAGAAAAGTAATTTATGTAAAAGAAAAATCTTTATGACTAAAGATGTTTAGTGAAATAATTAAAATCTTAATATTTATTTCTCAAACAAAAACTATGATGTCGTAAAGTTTAATCATCTCACTATAGTTATTCAGCTTTTGGCAGTTACTGTTAATGAAAACGCGTTTAGATTTTCATGCACCTTTAATTCACTTTTCATCAATCATGTTTTATTTTTTCCTTTTGTTGAATGTGACATGCTGCTACTAATTTATTAGCTGATATTAATTTATTGCATTATTGTAAAAAAAGAATAGTACAATATTAATTGGTTTCTGTTTTGAACTATTCTTTTTTTACAATTAATAGTACAATATTTGAGTAAAGAAAAAGAAAAAATATATTATACAAAACTTGAAAACTGTTAAAAAAATATTTTAAAACAAATAAAAAGAATAACTAAAAATATATATTAAAATTGAATTAATTTAATATAAACCAGATGCTCAAATAATAGTTTTACCCACTTCTTCTGTAACAAGTGATAAAAATATTAAAAAATGTCAACTATACATTACAAAAACATATTTAAAACGACGTTAAATACTGTACAGAACAATCATACCGATCACTATAAAAAAAATAAAAAAAATAAAAAAATAAAAAAAATGAATGTTTGAATATGAATGAGACACGAATTATCATTTATTTACTTTTTAAATGTCGTAATATTTCATTTAATCAATGAATAACTTAATTCCACACAAATCTTTTGTGCTGTCCATCTTTTTTTCAAAACTGTTTTCTTAACACAAACTTCATTCTTCTACCAATCGTACCAAATCTACCAAACATTGTCTTTCGACTAATAACACTTCCACCAACCACCACATTTTTTCTCCATTCACCAAGTATACTTCCAATATTAAATATCCATTATTATCATCATAAACATAAATAAATAAATTTCCTTTTTTTCTTTAGTTGCATATATGAATTACAAAATATATTGTAATTAAAAACATAAAAGTATGTTAAATATTAGAAAGGTTAATGTATTTTGAAATCTTGCCGAGGCAAAAATGGAAATTAGAAAGTAATATTAATGGTTAGTTTGTGATAGAATTTATTAATAGTTTTTGTTACACAAGAATAAGGTTTAGCGTAAAACGATATAGTTGTGATGTGTTGGGG


Gene Sequence:
>Vu_24005(-)
GAAGTGAAGAGAGTTTGGTGATTATTTATTCTCTATTCTCTATTCTCTATAATAACTATCACCAAACACAGAATTCAGAAGAGGACATGGCATCGTCGAAGGTGGTGGTCACGACGAATCCCGATGTGGCGCCGCCGCAGAGTTCGATTTCGAGCCAGGTATGGGACGAGGTGGTCGGGGGCGCTGAGTCTCAGGACATGGCAATCAGCCTCCACGATTTGTTGTTGACCTCCGTTGCCGGAAACGACGCCGTTCCGCCCTCTCACGGGGGAAGGGGAAAGAGAAAGGCCGTGGAGGAAGCCGTCGTGGATAGGGCTACTCTTCAGAAACAGAGAAGGATGATAAAAAACAGAGAATCTGCCGCTAGGTCCAGGGAACGCAAGCAGGTAGTTTTTTTCTATTCCCTTTTCTCTTTTTTCTTTTCAATTTTATTTTATTTTTTTATTTGAAACTTGTTCGGCGAGTGACAGTTTGTGATGATGATGATGTTTGTTGTTTCCAGGCTTATACAGTTGAGTTAGAGTCTTTGGTTACACTTCTCGAGGAAGAGAATGCTCGATTGTTAAAGGAAGAGGTTCGTTTCCTCACACCTCATCTTCTTTTTTATTAATTTATTATTATCAGCTGTGAAAATCTGGTTTTTCTTGGTTGATTCTTGCTGGAGATTTTTGTGCTTTTTTTTTTTGGTTAACATATGATTCGTGAGTTTATGAAATATTGGGTGTTGTTATATGCAGGCTGAAAGGAGAAGGCAGAGGTTCAATCAGGTATGCACAGTATCCACTTCCTTTCTGTTTCAACCTGGGTGATGTTACTGTATTGGTGTAATTCTTGAATGCCTCAAGAAAACAAGTCAACTTTCATTTATTTGCTTTTATAACTATGAATTGAATGCTGAATTCGAACAACTACAGTTCATGGGGTGAGTCAGCCTAGCAATTTTAATAATGTTCACTGAGAAGTCAATTAATGTTCACGTTTTAACTGCCTTTCAATAGGTTAGGTTTGATCAGCTGCAGCATACAATTGCAGTAGCAATGTGAAGGGTACAATCCACCTATCCATATAATTGCAGTGGTTAGATTAGGTTAGGTTTAATCTCAATTTCTGCTTTCTTTTGGGATCACTTGCCTTCTTACTGATCTTTAAGTCACCCGGATGAACTACCACTTCTTTTTTGGCTCATTCTCTCGGATCATATAGTCTTGTGCCCACTAAATTGTCTTGCCTACCATTCTTGATGGATTATTCAATCTCATTGGCACAGCACTTTTGATATACTCTTGAATTAATTCACATGTGCCATGTGTCAGTTGTCCACTTATCCTTGGAAAGGTATTCTTGGAACTCTTAGACCTGCTACATACAGTGCATCACTTCAATACCTACATTTACATCTCTTGGTTGAATATGAATCGGGGATCAGGAGTAATATTATTGTTTCTAGAGTTTAGAGAGTGAAGTGAACTCCCTCTTTTCTTACAATTGTACTAAGAATGGCTTCGACAAGTAATGGTTGGGCAACAAACCCACAAGGCTTTAACTTATATAAGGGTATAATTACCTTTTAAGTGGTTGCTGCATGTCTGTTAATGTGATCAGTCTCCTTTTACTCTTTGTGTGCAGCTCATGGAGTGTCTTATTCCAGTTGAGGAGAAGAGTAAACCAAGACGAATGCTTCGGCGAGTGAATTCAGCCCAGTGGTGATGTAATATGCTGCTAGTCCTGACGGACTTGTTTTGAAGTCCTAGTGTAGATACCAAACGTTATGCATGATAATGTTAAAGGGTAAATATGAAACAGAGAGAAAAAGATTTGAAAGTTTAATTTATACACACATAGCTTTGCTGATTATTTTGCAGGATCATTCCAAGTTACATTGCTGCATAGAGAAAATGGCTGCAGCCAAGAAATATTTGACTAATTTGATTGAAGCTGAAGCTAAAGCCAAGTAATGTTTTAATATATCTGGGGGATGGGAGTTGAAATTAGAATGTATGAGTAATGTTAGATGCTCTGGTTTTTCCTGTTTTAGGGAGGAAACACTGATAAACATGGACTGTGTATTGTAAGTTTCATATATAATTTTTACTGCAAAATGCCTATCTATTCTGC