Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_24064	LG5	70801736	70802842	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	tissue development, protein phosphorylation, shoot system morphogenesis, protein phosphorylation, shoot system morphogenesis, phosphorylation, regulation of developmental process, protein phosphorylation, chemical homeostasis, phosphorylation
Cellular Component	is active in	plasma membrane
Molecular Function	enables	protein serine/threonine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
A/G	70801774	synonymous_variant	p.Thr13Thr
G/A	70801794	missense_variant	p.Arg20Lys
G/A	70801894	synonymous_variant	p.Gln53Gln
G/T	70801975	synonymous_variant	p.Val80Val
A/G	70802019	missense_variant	p.Lys95Arg
T/A	70802086	synonymous_variant	p.Pro117Pro
G/T	70802135	missense_variant	p.Val134Leu
A/G	70802264	missense_variant	p.Met177Val
C/G	70802461	missense_variant	p.Phe242Leu
T/A	70802537	missense_variant	p.Ser268Thr
C/G	70802613	missense_variant	p.Ala293Gly
A/G	70802624	missense_variant	p.Arg297Gly
C/G	70802629	missense_variant	p.Phe298Leu
G/A	70802741	missense_variant	p.Val336Met
C/A	70802764	synonymous_variant	p.Ala343Ala
T/C	70802787	missense_variant	p.Ile351Thr
A/G	70802813	missense_variant	p.Ile360Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_24064.1

MEEFEYEEVVKATENFNPRRVVGKGSHGMVYKGFVRFKENNSFRLVAVKKPSQGLQSLHDNSKLENEIRVLSSLPENPHVVNLLGTTSGDDHGHKLIVMDFMPNASLHDLLHANENPPTWPKRVQIAMQIARAVQFLHQGKPVVIHRDIKPSNILFDSRWNAKLADFGLAVRGVDPMSRPAGTMGYLDPCYTTPDKLSTKNDIFSFGVVLMEIISGRKAIDACKTPASVVEWAVQLMDEQVFKEICDARVALPGYMVETITRLLRYASRCVSENEDERPSAGEIVMGMESWLAKRVRFPVWRRVLNGLVWLRKKPMISIGWQTQTRIQCIAEEESVVEDAGVAGGKISITIREVLADVNIGVTQIQMS*

CDS Sequence:
>Vu_24064.1

ATGGAAGAGTTTGAGTATGAAGAGGTTGTGAAAGCAACAGAAAACTTCAACCCCAGAAGGGTCGTAGGGAAAGGAAGCCATGGGATGGTGTACAAAGGATTTGTTCGATTCAAAGAAAACAACAGCTTCAGGTTGGTCGCCGTAAAGAAGCCATCGCAGGGCCTTCAATCTCTTCACGACAACTCCAAACTCGAAAACGAAATCCGAGTTCTATCTTCTCTACCTGAAAACCCTCACGTGGTTAATCTTCTGGGAACCACGAGTGGTGATGATCACGGCCACAAACTCATTGTGATGGACTTCATGCCCAATGCCTCTCTCCATGACTTGCTTCATGCCAATGAAAACCCTCCCACGTGGCCCAAACGCGTTCAAATCGCCATGCAAATCGCTCGTGCGGTGCAGTTTCTTCACCAAGGTAAGCCTGTGGTGATTCACAGAGACATTAAACCCTCCAACATATTGTTTGATTCACGTTGGAATGCGAAGTTGGCGGATTTCGGACTCGCGGTGAGAGGGGTTGATCCGATGAGTCGACCCGCTGGGACAATGGGGTACTTGGACCCGTGTTACACTACCCCAGATAAACTCAGCACCAAAAACGATATTTTCAGTTTTGGGGTTGTGTTGATGGAGATCATAAGTGGTAGAAAGGCCATCGATGCCTGCAAAACACCGGCTTCAGTTGTGGAATGGGCGGTTCAGTTAATGGATGAACAAGTTTTCAAAGAGATATGTGACGCGAGAGTGGCACTGCCGGGTTACATGGTTGAAACGATCACTCGCCTGTTACGCTACGCTTCACGTTGTGTGTCAGAAAATGAAGATGAACGTCCTTCGGCTGGTGAAATTGTTATGGGAATGGAAAGTTGGCTGGCGAAACGAGTAAGGTTCCCCGTTTGGAGGCGCGTTTTGAATGGGTTGGTTTGGTTGAGGAAGAAGCCGATGATAAGTATTGGTTGGCAAACTCAGACACGAATTCAGTGTATAGCAGAAGAAGAGAGCGTGGTAGAGGATGCTGGTGTTGCCGGTGGGAAGATATCCATCACCATAAGGGAGGTTTTGGCTGATGTTAACATTGGAGTGACTCAAATTCAGATGAGTTGA

Promoter Sequence:
>Vu_24064::LG5:70799736-70801736(+)

GGCCCAATTACATAATACTGAAAAGCAACAGCCTGTAAGATTGAAGAAGGTCATGATTTACACGTTCTTGTATGTTTATGAGAAAGAGGATAACGGTTCTCACCAAACGTGTGACATGTTGGGAGTGAAAGACAAAAAAATCCTTAACCTTTGTTCACTTGAATGGATTTGGGGAAGAGTGATTGAGTGGATTTGAAAAGATTTGAAGATAAATTTTGTTGTTGTTTATTTGAGTGAATATGGAAGTAAGTGAGAGTGAATTTGGAAGCAACGTTTGTGAGAATTAGTGTAAGATTTGATTGATTTGAAAGATTAAAAAAATTTACTTTTAAATTCACTCTCACTTACCTCCAAATTCACTCAAATAAACAACAACAAAATTTATTTTTAAATCCTCTCAAATTCACTCAATCACTCTCCCTCAAATTCATTCAAGTGAACAAAGTCTACGTATTGAAAACATAAAGGTAATTCTCTTAAAACATATATGCTCCATGAGGAAACATTTTAGATTTTTTTTTACCAGTTACACACAATTCTCATTCTTTTAATAGTTACAAATCAACAATTGATAATTATGAACTAGGAAATAAGTCTGGAAGGCAATGAGTGTGTGGTTGAATCACTTTATTTTATGGGCTTTGCCAGCTTTATCTCGAGACACTAATGGGCCTGAAATGACAAATAAAATGGGTTGCTTCCTGCACCCTTTCATATTTCTTCATCCATCCTATCAAAAAAGCTACAGGAAATCTTTTCCCCTGACAGGGAGGGGTGATTTCTGTCCTGAAAAAATATTCCAAAATTGTTTTTGTGTTCCAGAAAATAAATTCCAAAAATGTTAGGGTGCATGAAGCAATTATGAAAGATTCACATCCTTCAAAAATCACTCCTTTATAATGCCATGCCAGATCAGATAACTAAAATCCTCTGTTCAACACCTTCCATCAGTCACTAGTTTATTTTTAAAAAACATGTATTTGATGTTTTAACCTTTCTAATTGAAAAATATTATTGTGACACATTTAAATTTTTTACATTCATTTAACATTATCTTTACTTATTTTTTCTTTATTTTAAAAAAAAAAATACAAAACTTTACATTTTTATGATCATTTTACACTTATATTATGTGTCAAATGAATGTAAAAGTGTATCATAATACAATTTCTCTTTTTACTTTGCAGAAGAAAATAATTCTTTGATACAATTAAATATTTTACATTCATTTGACACTAACCTTACTTTTTATCTTCTTTCTTGAAAAAATACAAAAGTTTACACTTTTAAGATCATTTTATCTCTATATATACTCTGTCAAATGAATGTAAAAATATGTCATAATATCGTTCATTTTTGCATAAATAGAGAGTTGGTTTTATATTTGAAGGTGACATATGACTGACAAGATAATTTGACACAATAAATGATAAATATGTCTTAAAAAAACGAGTTTTGCATAATCCCTTTTGCTTTACACGTTCCAAATCTCTCCTTGGATGGCTTACTTGCCTTAACTCTATATAAGTAAGGCTTTGGGATATATAATTAGTTAAGTATTAAACTGATTTATGTTTCATAAGCTTTTTCCTCTGATAAATAACAAGAAGTGAGCAAAGTGGGAGAGAAAAAAAGTTAAAAAAAGTTGAAATAAAGAAGGGAAAGAATCGAGAAACGGGACCCAATAAGCAGCAAATGGTGGTATCCTTCGTCAGAATCCTGTCACAAACTCTTTAGCTTTTTCTTTTACTTTTCCTTTTCTCAATAATTCTCTGATCATATTTTTTCTTAATTTTGATTCTCTCTTAGCTCTCCAAAGCACCTTTATTCCCTGGGTTCTACGAAAAGCTCATCATGCATCAAGACATTATCTTATTCTTAACACCAGTTTTAAGAACATTACTTTATAACAATCTCAACTTCCATGTTTCTTTCTCTTCTTTTCGTACCTCTTTCCATTTTGTAGTAAACATTCCATCGAAAGAAGAACAGCGAAACCA

Gene Sequence:

>Vu_24064(+)