Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24068 LG5 70824846 70828878 PREDICTED: dnaJ homolog subfamily C member 2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   embryo development ending in seed dormancy, leaf development, leaf development, regulation of flower development, regulation of flower development, shoot apical meristem development, 'de novo' cotranslational protein folding, regulation of flower development, embryo development ending in seed dormancy, embryo development ending in seed dormancy, regulation of translational fidelity, embryo development ending in seed dormancy, embryo development ending in seed dormancy, regulation of flower development, regulation of flower development
Cellular Component   is active in   cytosol
Cellular Component   located in   cytosol, nucleus
Molecular Function   enables   ribosome binding, Hsp70 protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03110 Chaperones and folding catalysts [BR:ko03110]
SNP Position Effect Amino acid change
T/A 70824960 5_prime_UTR_variant
T/C 70825235 upstream_gene_variant
G/T 70825236 upstream_gene_variant
G/T 70825318 upstream_gene_variant
T/G 70825344 upstream_gene_variant
G/A 70825643 upstream_gene_variant
G/A 70825644 upstream_gene_variant
G/A 70825713 upstream_gene_variant
G/T 70825751 upstream_gene_variant
A/G 70825771 upstream_gene_variant
C/T 70825775 upstream_gene_variant
T/G 70825840 upstream_gene_variant
C/A 70825857 upstream_gene_variant
T/A 70825928 upstream_gene_variant
T/G 70826220 intron_variant
T/C 70826223 intron_variant
G/A 70826514 intron_variant
T/C 70826780 synonymous_variant p.Ala2Ala
A/G 70826986 missense_variant p.Gln71Arg
C/T 70828202 synonymous_variant p.Pro476Pro
A/G 70828554 missense_variant p.Lys594Glu
A/G 70828556 synonymous_variant p.Lys594Lys
T/A 70828560 missense_variant p.Phe596Ile
A/T 70828639 missense_variant p.Lys622Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24068.1
MAVHTKFRLITYSQEIVDGQPIFVSSNCLPTKALKYEPAGHSFHSAALKLRGVQEDKNEADDKKVPEDKEQTYLPSDSYSSKSKKKSGTGDKQQDHYALLGLGHLRYLATEDQIRKSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDSVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPTLGDDNTTLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEDYARIRTLVDNAYKRDPRILRRKEEEKAEKQRKKEAKYLVKKLQEEEAARIAEEEKQRKEEEERQAAEAALQQKKVKEKEKKLLRKERARLRTLSGPIISQRLLDISDDDVEGLCMSLDIEQMRSLCENMEGKQVLLEQASVLRDAMSSKKEVADEKTNKKDANGSIKANGSASRSNVEKKEKPWSKEEIDLLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDTFLEKRKPGAQSIESPLSTREELEGVSTLASTNSTEESHSKSTDNQNSASANGVSSSSEQDVWSAVQERALVQALKAFPKETSQRWERVATAVPGKTVNQCKKKFAMMKENFRNKKSAV*


CDS Sequence:
>Vu_24068.1
ATGGCTGTACATACAAAATTCCGGCTCATTACTTACTCACAGGAGATTGTTGATGGACAGCCTATTTTTGTCTCTTCAAACTGCCTTCCTACCAAGGCTTTGAAATATGAACCTGCAGGTCATTCTTTCCATTCTGCTGCACTTAAACTTCGTGGTGTTCAGGAAGATAAGAATGAGGCTGATGACAAAAAAGTGCCTGAGGACAAGGAACAAACGTACCTTCCATCTGATTCTTATAGCAGTAAGAGCAAAAAGAAATCTGGTACTGGGGACAAGCAACAAGATCACTATGCATTATTGGGTCTGGGTCATCTAAGGTATCTGGCTACTGAGGATCAAATCCGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGACAAACAGGCTGCTCTTCTTCTCGCTGAAGAAACTGAAGCAGCCAAACAAGCAAAGAAGGATGAAATAGAAAGTCACTTCAAGGCAATTCAGGAAGCATATGAAGTACTGATTGATTCTGTGAAGAGAAGGATTTATGATTCCACAGATGAGTTTGATGATGAGATTCCCACTGATTGTGCTCCACAGGATTTCTTTAAGGTGTTTGGTCCTGCTTTTATGAGGAACGGACGGTGGTCAGTTAATCAACCAATTCCAACACTAGGTGATGATAATACTACATTAAAAGAAGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAAAGTTGGAGGGAGTTTCCTCATGCTGATGAGTTTGATCTCGAGCAAGCTGAATCTCGAGACCACAAGAGGTGGATGGAAAGGCAAAATGCAAAATTGACAGAAAAAGCTAGGAAGGAAGACTATGCCCGGATTCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCCAGAATATTGAGAAGAAAGGAAGAAGAAAAAGCTGAGAAACAAAGGAAAAAGGAGGCTAAGTACCTGGTGAAGAAATTGCAGGAAGAAGAAGCAGCCAGAATTGCAGAGGAAGAGAAGCAACGAAAAGAGGAGGAAGAGAGACAAGCTGCAGAAGCTGCTTTACAACAAAAGAAGGTGAAAGAGAAAGAGAAAAAGCTTTTGCGGAAGGAGCGAGCTCGCCTTAGAACACTTTCAGGACCTATTATATCCCAGCGTTTACTTGATATTTCTGATGATGATGTAGAAGGGCTTTGCATGTCTCTTGATATTGAGCAGATGAGGAGTCTCTGTGAAAACATGGAAGGCAAACAGGTGTTATTAGAGCAAGCAAGTGTTTTGAGAGATGCAATGAGCTCCAAGAAAGAGGTGGCTGATGAAAAAACCAATAAAAAAGATGCCAATGGTTCAATCAAGGCTAATGGCAGTGCTTCTCGAAGCAACGTTGAGAAGAAGGAGAAACCTTGGAGTAAAGAAGAGATTGATCTACTGAGGAAAGGAATGCAGAAATACCCCAAAGGAACTTCACGGAGGTGGGAGGTTATTTCAGAATACATTGGCACTGGAAGATCTGTTGAAGAAATAATGAAGGCAACTAAAACTGTACTCCTCCAGAAACCTGATTCATCAAAAGCTTTTGACACATTTCTTGAGAAAAGGAAACCTGGTGCACAATCAATTGAGTCTCCACTTTCAACCAGAGAAGAATTAGAAGGTGTATCAACTCTTGCCTCAACCAATAGCACAGAAGAGTCTCATAGCAAAAGTACAGATAATCAGAACTCTGCATCTGCTAATGGAGTTTCTTCAAGTTCAGAACAGGATGTGTGGTCTGCAGTGCAGGAACGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACAAGCCAGAGGTGGGAGCGAGTTGCAACAGCAGTACCTGGGAAGACTGTGAATCAGTGTAAGAAAAAATTTGCAATGATGAAGGAGAATTTCAGGAACAAGAAAAGTGCAGTCTAA


Promoter Sequence:
>Vu_24068::LG5:70822846-70824846(+)
AAATATATATAATACAATAATTCTAAATATTTATATAAGTGACGCAATATTCTTAAATTTCAAAACAATTAATCTCCGTATTGAAAAAAAATATATTTATGTCTCATACCTCCTAGCACTCATCCAATAGCTGTAAGTTATCTATTTCATCTTATAGTCTTAAAACTTGTAAACTACATTATTGTGTTTTTCAACTCAAAATAAAAATTTTCTTTTATTAAAATTATCATGACCATAAGCATAATACATAATATTATTATTGTATCTTATTTTTTAAGAAATATGCTTAAAAGGTTTCCCATCAATTTCAAAAGTTTATCACTTTTTCAACCAATATATTAATTTATCTCTTAATTTATTTGACAAATGAACATGTATTAAAATATTTCACATATAAAAATAAGATGAAATAAGATTACGGGCATGTTAATAAATAAATAAATTGAAATAAAATATATAAATAAATAAAAATGAAGTTTAGAAACACTTACTAAATAAAAAAGAAAGACGAAGTTAAAAACACCTCGTTAAATAAAATAAAATAAAAAATAAAATTATAAACATTTCATCGAATAAAATAAATAAAAATAATAAAATAAAGTAAAAAATAAAATTAGAAGCAATAAAAAAAATACAACAAATGAATAAAAATAAAATTATGAAAACTTCACTTAATAAAATAATAATAAATAAATAAAAAATAGACGATAAACACCTCATTAATAAAATAAAAATAATAACAATAAATATAAATTATAAACACTTTACTATTAAAATAATAATAAATAAACAAGTAAATAAAAACAAACTTATAAATATCTTACTGATAAAATAAAAGTAAAAATAAAATTATTAACATCTCACTAATAAATATCAATACTATCAACAAATAATGTTTATCCACGAAGTTTGGTTATTATTGAGAAATCATCAATATTCTATATTTTCTTATAGCGAGAATACAAAATAATTCAAATATATTTTATTTATTTATATTTTTAAAGTATCTTTTAAAAGGAAAGCAGTATTAAAACTGCAATTTGTTTAGTTTTATATTTTGTATATTTGACAAGATTAATAAACTAACTACTAATTTATTTAATTGAATTATAAACTAGTTTCACTAATATAATTAAAAATGTTTGGCAAGTAATTCAAAATTATCTAAGTGATTTCAGTTCTATAAAACTTTGCTAACATCTAAGTAATTTGATTAAATTATAAACTAGTTTAACTAATGTTTATTACTGTTATTTTTTTTTTTTTACTTTTACTAGTTATTTTAATCTTATCAAGATGATTAGAGTATAGTACCATTTTTAGTATTCATTTGGTTACTTTTTAATATTTTATTAATTTAAATAGAAATTACTTAATCTTATAAATTGAAGTAACTAATCTTTCATCACATGAAATTATATAAAAACTGCACATAGTGAAAATAAAAAACAAATTCAATGTTACAATTATTTATATTGGGAAGTCAAAAGATTTTAATTCGGGAAAACAAAAATTAAAATTAAATAATATTCACCACTTACTATGAAACGAGTTATTAAAAAAACTCATATCATTTAAAAAAAATAAATAAAAACAATAATAGATTTAATAACAATTTAATTATATAAAAATAACTAAAATTATAATTTACAGTAAGATATAATTTCATTCTTTTTCTTAGCATTTTTATAATTTAAATTGGAGTCAGCAGATAATATGAATATTATCTAATTAGAGGTTCACACATGTGATAAATTGGTTATAATTTATAAGGAATTGTATTTACAATGATATGATATAAATTAAATTCGGTTTCAAATTCATTTTAAATCAAACTGTGCATTCTTTTATAATTTTTAAAAAATAAACATTCAAGTAAAATAAATTTCTATAATTTCATTCACATTTATGAAAAAATATTTTTTTTGAGTTTATTTATATTGAATATATAGAATGAGGTTAATGAAATAAATATGATGTTTTTGCAATTATATTTTGGA


Gene Sequence:
>Vu_24068(+)
AAAGAAAGAAAGAAAGAGGAAGAAGAAAGATAGGGCAGTGGGTGTCGCCACATATAAAATGCCCAAACCAAAACCAAAACCTTCCTTCTCCTGTGCTCTTCACAGTCGGCTTCTTCCCTTCTTTGCGTGATTCCTCCTTCCTTTTCTCTTGGTAAAGCTTTCATCTTTCTTCTTCCTCTCTGTTTTTCCATCCCATCACTTCCTGCATCACACCTCACATGCCATGCTTTTCTGTTCCTCATGCCAATCACGATCTGTTTTCGTTCCACTTCTCATGGTGCAAAACCTACACTTTTCTGGGCTTGTGGGTAAAAGTGTAATCTTTGTTTCATACATCTGAAACCCTTTTGAGTTTACCTGCCCTTTGGTTTTTTAGCTGTTTTTTTTTTTGTTGATGTGATCAATTCGTGTACTTTTCACCCTTGTTTCGTTTTTCGGTCATGATTGTTCTTTCATCTTTTGTGGTTTCTTAGTTGAAGTTTTTTTTTTTTTTAGTTTTGGTGTTGCATACTACGCAGAATGAAATCCACAATCTTGTTACTGTGTATGTGGGAGCAGTTGCCTTTGCATTGTCTTCAACCTGTTTCTACCCTAATTATCTACCCTAATCGATCTCGGATGTCAAATCTGACATGCACTTAGTTAATTGCAATATTCAGTGAAATAAATTTATTTTGCTCTTTCAATGTTTTTTGTCCGTAAAAAAAATGATTTTCATCCTCATGCTTTGAGAAGAAGGCCCTTCTTCATGACCACTGTTACAATATGAATTTTATGTTCACTGAATGGTAGCTTTCGGCAGATTTTTACTTAACTGTAGATTAATTGGATGTGTTATTTCCTTTACTTTTTCTTTTCATTGGATGGGCTGAATTTGTTTTTTATTAGTTTCATGAAGTTAGGGAGGGGACGGGAAATAATTGGCAGTGCTATGTATTGGTCAGTATATCAAGCAGTGTCTGAACTATTTTTGCCTTTATTTTGAGAGTTTAATTAATTTTGGTAAGATTACAATGATATTTTACTATGCATGTGAAACTGAATCGTGTGGATCATACCCAGCACTTTCCCTCTGATTACCGTACTTCTTTGATATTCAGTTAATTGTATTTCAATGCGGGTATTCTATGCCCTGGTGAAGTAACTGAAAAACTATTTTCTGTAACTGTTATCCTTTTTCGTCTTAGTTTGGGAAACTTTGTTTTTTTAGAATATGCCTGAGAGGCCAGTCCTTGCCTATTCAATCTTTGTACATTGCAAACTTGCCAATAAGCTACTTCTGTTCATTGTTATATGCCTTGCTTCTCTCTCCTCACCTTCATGAAAGCATAGCTAAGACACAGACAGTATGTCTTGTATTTGTTCTTTTTTCACTGTTAGATTGCTACTTTTCCATTATAAAATATTTTCATGTCTGTGTTGGCAGTGCTTTTAACCGGTAGTGCCATGTGCACCACGGCAGATATTTTTCCAATTGGCATAGGCAATCTGTGAAGTTGCTGTCATAGGATGCAATGGAATGTTTATATGGCTGAATTTTGGCCTTCTGCCATAATGAATACTGCTAAGAGGAGCAATAGTTGTTTAGGCCTTCTCTGAAACAGTTTTTATCTTCTTTTAAATTCTGTGGTATATTGGCTAAAATTTTTGACAGTGTGCTCATCTTTGGTGTTTCTATTAATCCACTGATTTCTATCAAGAAAATTACTGTATCCAATACGCGTTGAGATTGGACATCCTTGTTGCATTATTGGCCTTTTTTTCCCTTCGCATCTTTAAGAAAATATTTCATTCTTTCAAATAATATTTAGATGTTGATTTAACTAAGTCAAGGGGAATGAGAACTGTCTAACTGAATTTTTATTTGAATGCAGGTTACACAGTTAAATTTGAGGGGAGACATATTTGGTTGTTCTGAAAGCCACCATTATGGCTGTACATACAAAATTCCGGCTCATTACTTACTCACAGGAGATTGTTGATGGACAGCCTATTTTTGTCTCTTCAAACTGCCTTCCTACCAAGGCTTTGAAATATGAACCTGCAGGTCATTCTTTCCATTCTGCTGCACTTAAACTTCGTGGTGTTCAGGAAGATAAGAATGAGGCTGATGACAAAAAAGTGCCTGAGGACAAGGAACAAACGTACCTTCCATCTGATTCTTATAGCAGTAAGAGCAAAAAGAAATCTGGTACTGGGGACAAGCAACAAGATCACTATGCATTATTGGGTCTGGGTCATCTAAGGTATCTGGCTACTGAGGATCAAATCCGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGACAAACAGGCTGCTCTTCTTCTCGCTGAAGAAACTGAAGCAGCCAAACAAGCAAAGAAGGATGAAATAGAAAGTCACTTCAAGGCAATTCAGGAAGCATATGAAGTACTGATTGATTCTGTGAAGAGAAGGATTTATGATTCCACAGATGAGTTTGATGATGAGATTCCCACTGATTGTGCTCCACAGGATTTCTTTAAGGTGTTTGGTCCTGCTTTTATGAGGAACGGACGGTGGTCAGTTAATCAACCAATTCCAACACTAGGTGATGATAATACTACATTAAAAGAAGTTGATAATTTCTACAATTTTTGGTACTCCTTTAAAAGTTGGAGGGAGTTTCCTCATGCTGATGAGTTTGATCTCGAGCAAGCTGAATCTCGAGACCACAAGAGGTGGATGGAAAGGCAAAATGCAAAATTGACAGAAAAAGCTAGGAAGGAAGACTATGCCCGGATTCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCCAGAATATTGAGAAGAAAGGAAGAAGAAAAAGCTGAGAAACAAAGGAAAAAGGAGGCTAAGTACCTGGTGAAGAAATTGCAGGAAGAAGAAGCAGCCAGAATTGCAGAGGAAGAGAAGCAACGAAAAGAGGAGGAAGAGAGACAAGCTGCAGAAGCTGCTTTACAACAAAAGAAGGTGAAAGAGAAAGAGAAAAAGCTTTTGCGGAAGGAGCGAGCTCGCCTTAGAACACTTTCAGGACCTATTATATCCCAGCGTTTACTTGATATTTCTGATGATGATGTAGAAGGGCTTTGCATGTCTCTTGATATTGAGCAGATGAGGAGTCTCTGTGAAAACATGGAAGGCAAACAGGTGTTATTAGAGCAAGCAAGTGTTTTGAGAGATGCAATGAGCTCCAAGAAAGAGGTGGCTGATGAAAAAACCAATAAAAAAGATGCCAATGGTTCAATCAAGGCTAATGGCAGTGCTTCTCGAAGCAACGTTGAGAAGAAGGAGAAACCTTGGAGTAAAGAAGAGATTGATCTACTGAGGAAAGGAATGCAGAAATACCCCAAAGGAACTTCACGGAGGTGGGAGGTTATTTCAGAATACATTGGCACTGGAAGATCTGTTGAAGAAATAATGAAGGCAACTAAAACTGTACTCCTCCAGAAACCTGATTCATCAAAAGCTTTTGACACATTTCTTGAGAAAAGGAAACCTGGTGCACAATCAATTGAGTCTCCACTTTCAACCAGAGAAGAATTAGAAGGTGTATCAACTCTTGCCTCAACCAATAGCACAGAAGAGTCTCATAGCAAAAGTACAGATAATCAGAACTCTGCATCTGCTAATGGAGTTTCTTCAAGTTCAGAACAGGATGTGTGGTCTGCAGTGCAGGAACGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACAAGCCAGAGGTGGGAGCGAGTTGCAACAGCAGTACCTGGGAAGACTGTGAATCAGTGTAAGAAAAAATTTGCAATGATGAAGGAGAATTTCAGGAACAAGAAAAGTGCAGTCTAATGTCATGTGACATCTTTTAGATTTTACTGCTAAATTTTTTTCGAGAGTATAGGCTAGTTTCAAATTCCTTCAAATATCCATATACTAGTTTGAGTCCTACATTTTAAGTTTTCTTATCTTATTATTCATCTCATCTCTTTTGATACCGTACTTTGAACTTGGAATTAATACATTTACTTGTTATTCATCA