Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_24094	LG5	71024510	71025559	PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	MAPK cascade, protein phosphorylation, protein phosphorylation, cortical microtubule organization, cortical microtubule organization, cytokinesis by cell plate formation, protein phosphorylation, cortical microtubule organization, cortical microtubule organization, cytokinesis by cell plate formation
Cellular Component	located in	cytoplasm, cytoplasm
Molecular Function	enables	MAP kinase kinase kinase activity, MAP kinase kinase kinase activity, MAP kinase kinase kinase activity, MAP kinase kinase kinase activity, MAP kinase kinase kinase activity, MAP kinase kinase kinase activity

SNP	Position	Effect	Amino acid change
C/T	71025481	synonymous_variant	p.Ser324Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_24094.1

MAVTRRRDGMRGVHQWAWPKPNKWVKGKLVGCGSFGTVHLAMNKSTGALFVVKSSHSRAGREALDEEVKILKIFNSSPYIVQCLGTEEEEQGKVNVFMEYMSGGSLADVAHKFGGSLDEEVVRVYTREILHGLNHLHLHGIVHCDLKCKNVLLDPHGNVKLADFGCARRANELGKSFGGTPLWMAPEVLRNESVDLSADIWSLGCTVIEMATGSPPWAHQVSNHVSDVLWIAHGDAIPQFPPHFSKEGLDFLSMCLQRDPRKRSTPQQLLSHPFVTSTPPSQHQQQKQHASSPASVLEVHDFRDSCDVHDFSLTNTLASYTDYSKGIAVCKAEDSALGSSGNWITVRSG*

CDS Sequence:
>Vu_24094.1

ATGGCGGTAACTAGAAGAAGAGACGGTATGCGTGGCGTCCACCAGTGGGCGTGGCCTAAACCCAATAAATGGGTGAAGGGGAAACTGGTTGGATGTGGATCTTTCGGCACTGTGCATTTGGCGATGAACAAATCAACGGGTGCCCTTTTTGTTGTAAAATCATCACATTCGAGGGCTGGACGTGAGGCTTTGGATGAAGAGGTAAAAATCCTGAAAATATTTAATTCTTCACCGTACATTGTCCAATGTTTAGGGACAGAGGAGGAGGAGCAGGGCAAGGTGAATGTTTTTATGGAGTATATGTCAGGAGGTAGTTTGGCAGACGTGGCTCACAAATTCGGTGGGTCATTGGATGAAGAGGTGGTTCGTGTGTATACCAGGGAAATTCTTCACGGCCTGAACCATCTTCACCTTCATGGTATTGTACACTGCGATCTCAAGTGCAAGAACGTGCTTTTGGACCCACATGGCAACGTGAAGCTGGCAGATTTTGGATGTGCCAGAAGGGCAAATGAGTTGGGAAAGTCATTTGGTGGGACCCCTCTGTGGATGGCTCCTGAAGTGCTGAGGAACGAGTCTGTTGATTTGTCTGCAGATATATGGTCCTTGGGATGCACAGTTATTGAGATGGCTACTGGCAGTCCTCCTTGGGCTCATCAGGTTTCAAATCACGTCAGTGATGTGCTCTGGATTGCCCATGGTGATGCTATTCCTCAGTTTCCACCCCATTTCTCCAAGGAGGGTTTGGATTTCTTGAGCATGTGCTTGCAGAGAGATCCCCGTAAGAGGTCTACGCCTCAGCAGTTACTTTCTCATCCCTTTGTTACATCAACACCACCTTCTCAACATCAACAACAAAAACAACATGCTTCCTCTCCGGCAAGCGTCTTGGAGGTTCACGATTTCAGGGACTCTTGTGATGTACATGATTTCTCTCTCACAAACACACTTGCATCTTACACTGATTACTCCAAAGGAATAGCTGTGTGTAAAGCAGAAGACAGTGCCTTGGGCTCATCGGGGAATTGGATTACAGTTAGATCAGGCTGA

Promoter Sequence:
>Vu_24094::LG5:71022510-71024510(+)

ACGGACACCGGCGGCACTGGATGGAGCGAAAACGGCAACGTCTACTGGCTTGGCGTATCTGGCGAGAGCTGTGGTGGCTGGTTCGAAGGAAAGAAGGAGAGAAGGTGCTCCATCAAATGTTCTCCGTTTTCTCTCTCTCAAAACATTTGAATCTGAAATTTTCGAAACAACCCTAAAAATTTGAATCTGCCCCAATTCTGCCATTGCCACATCATTCTTCGATTTTAAAAAAAAATTCCACGTGCACCAGTAACATTTAGACACGCGTCCTGTGTCCAAATGTTGTCAAAATTTGTTGTCTAAGTATCGTTTTCCTTTTCAAAAACGTAAATGGATCTTTGTCTGTGCCTTTTACTGTTGTAAGAAATAGAAAATCAAAATAATCCAACCATTTAATAATTTTTAGGAACAATTTTAAGAAACCTTTTACCAATAAAATTTTTTTAAACAATTTATCAAAAATTATAATTTAAACATTTTTCTCATTCCATTTTCTATCTTTTATATTTCAAATTTGACCCTTCTAATATCAATGGACAATTCTAGTATATGACAAAATATAGTATAAGATATGGGCTAAGTTAGTATTTTCTTCTAAACCTTTCTGTGGACAAGATAAAAATATAGTTTTTATAATAACTTCTTTTCGTATAAGATATATGTTTTTCTTTTTCAATATCAAGATACTTTCATAGGTTTCGTATTAGATATATGGTATATTTCGTTAAATTTCGATTCAATGCAATTATTCTAACTTTATTAAAATATTTTCTTGTATCGTTTTCAATTGTATAATATGGTACTCGATTATAAAACAACAATGGATTTATCACATTATAGGTAGCAAATACGACAATAACAGATAAATGTGATTTTTGTGTTTTTTAAATACTTTTTTTTGAAAGATTTTATCAAAAAAAATTCACTTAATTAATTAAATTGTCAACCTCCCGTGTTCATACCAAATCACCCTCCTAATCTCCCTCCACCTCAAAGCACCCCCTAGCACTATAATGTGTTTGAAAACAATATTCCAATAAAAATAAAAAGTAGCATCCTTTTTCTTATTCATCTACATTTTAATTGATTTTAATGGATTAAAAATACAGTAGATTGTAAAGTTTAAAATCTTAATGTTTGCATCTACTGTTTTTGTGATATATTTATCGTTTAATTAAAATAAAGTGATATATTGTACTTAAATGTATTTTCTGAAAGAAACAATTTCAAATAATTTTTAGAAGTAACATTATAAGACTTTAGAATGTAAGTATTTCATATAAGTTCATAATTTGGTTACAACAGCGAAATTATACAAAATCCAACACCAACTGTACATTACACGTGGAAATCTTGAACCATGTGTGGCGATAAATGAAGCGAGAAAGTCAAAGATCCTTGTTTTCTTAATTTGAGAAATTGCTAAATAGGAACATCTCCATTTGAATGGTACATTTGTAATGAATTTATGTATTATGGTGTCCTTTGCAAGAAGATAGAATGCAAGTTAATACAAAATACATTGTTATCTGTATATTACTTTTTTTTTATCATCATATGGAAACGAACAAACAGACAGAGGTGCAAAAATTAAGGAGAGCCAACCGTTAACCGGAAACGGGCGAAAACGGTGGGTTTTATAAGTTAGAGTTTATTGGTTTGGTTTCTCTGTGCGGGCGTGAGTCCCTGGTCGTATATTCAACAATCTCAACTGCAAATTCAACTTCTTCCAAAGCTTTGATTTTTTTGAGCATTCTCACTCACTGCAAACAAAGGAAGGGGTTCCCTCTAGAGGGCGGTTTTCCGATTTCTCGGAAACCGCTCTACCTTATCAACAACTTTGAAATCACTTGAAAGAAAGAAGAAGCAATGCTTCCCGGGGTGAAGAAGAACATATAATAATGCATTGCATGCTTTAACTTTTCGTCTGCCCACGGAATGTGCATGTGCATAGGTTTTTGGATTGAATTTTTGTAAATAATACTTGAAGAAGGTGGCGA

Gene Sequence:

>Vu_24094(+)