Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24193 LG6 3434512 3435099 PREDICTED: ethylene-responsive transcription factor 4-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   mucilage metabolic process involved in seed coat development, mucilage metabolic process involved in seed coat development, cellular response to hypoxia, negative regulation of ethylene-activated signaling pathway, cellular response to hypoxia, negative regulation of transcription, DNA-templated, negative regulation of ethylene-activated signaling pathway, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, induced systemic resistance, jasmonic acid mediated signaling pathway, negative regulation of ethylene-activated signaling pathway, regulation of transcription, DNA-templated, negative regulation of gene expression, induced systemic resistance, jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, mucilage metabolic process involved in seed coat development, response to abscisic acid, induced systemic resistance, jasmonic acid mediated signaling pathway, negative regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cellular response to hypoxia, induced systemic resistance, jasmonic acid mediated signaling pathway, induced systemic resistance, jasmonic acid mediated signaling pathway, response to ethylene, mucilage metabolic process involved in seed coat development, cellular response to hypoxia, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, induced systemic resistance, jasmonic acid mediated signaling pathway, response to ethylene, negative regulation of ethylene-activated signaling pathway, response to abscisic acid, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, mucilage metabolic process involved in seed coat development, negative regulation of ethylene-activated signaling pathway, induced systemic resistance, jasmonic acid mediated signaling pathway, mucilage metabolic process involved in seed coat development
Cellular Component   located in   nucleus, nuclear body, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, protein binding, cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 3434623 synonymous_variant p.Thr159Thr
T/C 3434650 synonymous_variant p.Thr150Thr
C/T 3434655 missense_variant p.Asp149Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24193.1
MAPRDRTTALAGPGPSPAQANKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPTPSELLVNNHSSSNNNSARSPSQSSTLDSSSPPPPPPLLDLTLTPLTASVLPAARPVLFFDAFARADTVIAVGRRDTCGFGRPATDFRRSDSNSERRGLLDLDLNVAPLPEVA*


CDS Sequence:
>Vu_24193.1
ATGGCTCCAAGGGATAGAACCACCGCACTCGCCGGACCCGGCCCAAGCCCAGCGCAGGCCAACAAAGAGATCCGCTACAGGGGCGTCAGGAAACGCCCATGGGGCCGTTACGCCGCCGAGATCCGCGACCCTGGCAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACAGCCGAAGAAGCCGCAAGAGCCTACGACGCCGCCGCTCGCGATTTCCGAGGCGCCAAGGCAAAGACCAATTTCCCCACACCTTCCGAACTTCTCGTAAACAACCATAGCAGTAGCAACAACAACAGCGCGCGTAGCCCTAGCCAGAGCAGCACCCTGGACTCTTCCTCCCCGCCGCCACCGCCTCCTCTGCTAGACCTTACGCTCACACCTCTCACCGCCTCGGTCCTCCCTGCCGCACGCCCAGTCCTTTTCTTCGATGCTTTCGCGCGTGCGGACACAGTTATCGCCGTCGGGCGCAGGGACACCTGTGGCTTCGGACGTCCGGCGACCGATTTCCGCCGCAGTGACTCAAATTCCGAGCGACGCGGGCTCCTGGATCTTGATCTCAACGTGGCTCCTCTCCCAGAGGTTGCGTGA


Promoter Sequence:
>Vu_24193::LG6:3435099-3437099(-)
CAACATACAGATCATGGTAGCTTAATAAAAGAAAGATATCAATAAAATTTCCCCACTTTTTTTTATTTTTACTTTTCATCAGATTTGGAGGATCACGCATTGTGGGTTCCGAGACTCATGTATTTTTTATTGACACTCTAGAAAAGATGGAAAGAATTGTGGACAGAATAAAAAACTATTTGAATATTATAATACACACAAATTGTGTTTTATAATATTAAATTAATAATAAATATAATAATAATATTTTTAATAATATCTGTGGTGGAAGAGAAAAGAAGGACGGCAGTACATACATGATGATATTTTGGGATGGTGCCGTATGCACAAGCGTGTCTCCCGCCAGGGATCCAAAGCACCACGTGTCACCGTTTCACTGTGCTCCATCTCCACCGTCTGATTCATCTGACGGATTCCAACACATTCACTCCTTCTAGTTTATTCTTCAGATCCTCATCCATCTCACGCGGCGAGGAGGCGGAGCGTGCCGACAAATTCTTCGTAATCATCTTCTCCATCCAACGCCGTTAACTCTGCCAACCGCTCCGTTAGCGCGGCACGCAGACATGCAAACGGCGTCAAGGAAAACGCCGCCTCTTCGGTAGTTGCTGGTGTCAGGTCCACGTGTCGTCCTTCAGAAGCAGCAACGTGGCCTCGTTCGACCCCCTTCGCAATTATTAATGTTGACGGTGGGCCCCGCCACCACGCTCTCTATCGCGGCTGGGGCGGCGCGGCGCTTTATAGAGCATACCATGATGATGCGCTAGTGCATGAATGAACACAGTGCAGTCAACGTACATCGTTGACCGCGCCAAATGTTTTAGAGATGCTTACCACCCACGTGTGGGGAGCGTTCGGGTACGCGCTCCTTGCTGCATCATTTTTTCCTACACGTGTAACCGCTATTTTTTTTTTCTTTATCTCCTCTCGCTGTCGCGTTTTAATGGAGGCGCTTTTATCTCTGCTCCTTTTTCTCCTTTTGAGCATACGATACGATAAGACACATGAGTTCCTTTCTTACAAATTAGCAGAAAATTGGAAATTCTGTATATTTTGTTTCCTTTTACCTAAGTTTTGTGATAACTACGTGCCTAACTTTTTATTTTTGCTTATTTAGGATTTTGTGTGTGATAACTGATTTGAAATAATGTTTATCGAAATAAATAAAACAAGTATAATTGACTAATTGAGTGTGGTTTTTTAATTTACCATAAATACTACAAGGACGTAAAATAAGTAATATTTGTTTAAGTGCAGAGTTTGCAAAAGAGGAGAAAAATAATCATTTACGTTTTGCCACATCTACCATCGGCTACCCACGAGAATTATACCTGTTGGTGCCGTTAAACTTCATTTCAAAGCTAGAGAATACGTTAAAATCATACTATCATTAATTTATTATTCACTAAAGATAGAATGGAAATGTAAAATATGAAAGGCCACCCACCACGCAATATATCGTACTTTCTTTCCATAAAATCAATAACTTTTTTATTTTATTCACTATATACTTTTAATTTCTCTCTTAAAAATATGAATTTATTAGTTTGATACCTGTTATAAATAATCTTAACCATTTATGTGCCTGAGAAATAGTCATCCAAAAAGACAAGAAGCAGTATTTGTGGCAGATTTTCTTTTCATTTCGGGAAAAAAGATGTGTATTTTGTTAAATTTAAAATGAAATAAATGAATGGGGAAATAAAAAGAGAGAAAATAAAAAGTGTACAGTGAGGTGGCAGGAAGGGAGTGGCGAGAAGCGTGAAGAGGTGTGGGGAAAGGGAAGTGGAGTGGTGAGGACGCGCGTGAGTGGAGCGTAGCATTAAAGACGCACGCACACGGTGTGCTTTCTCTCTCTCCATCTCGGGCTATAAAACCACTCCAACTCCCTTTCTTTCACTCAGACATTGTCTCAATCGCATCCTTACTCCTCTCACTTTTCTCTCTGTTTGTGTTCCCCGTTGAGGAAAAAAAACCTGGTATATTTGAATTGCAAGCAA


Gene Sequence:
>Vu_24193(-)
ATGGCTCCAAGGGATAGAACCACCGCACTCGCCGGACCCGGCCCAAGCCCAGCGCAGGCCAACAAAGAGATCCGCTACAGGGGCGTCAGGAAACGCCCATGGGGCCGTTACGCCGCCGAGATCCGCGACCCTGGCAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACAGCCGAAGAAGCCGCAAGAGCCTACGACGCCGCCGCTCGCGATTTCCGAGGCGCCAAGGCAAAGACCAATTTCCCCACACCTTCCGAACTTCTCGTAAACAACCATAGCAGTAGCAACAACAACAGCGCGCGTAGCCCTAGCCAGAGCAGCACCCTGGACTCTTCCTCCCCGCCGCCACCGCCTCCTCTGCTAGACCTTACGCTCACACCTCTCACCGCCTCGGTCCTCCCTGCCGCACGCCCAGTCCTTTTCTTCGATGCTTTCGCGCGTGCGGACACAGTTATCGCCGTCGGGCGCAGGGACACCTGTGGCTTCGGACGTCCGGCGACCGATTTCCGCCGCAGTGACTCAAATTCCGAGCGACGCGGGCTCCTGGATCTTGATCTCAACGTGGCTCCTCTCCCAGAGGTTGCGTGA