Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24320 LG6 5914931 5916247 PREDICTED: protein SPOROCYTELESS
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   anther development, anther development, anther development, anther development, sporocyte differentiation
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
C/T 5915025 missense_variant p.Pro32Leu
G/A 5915326 synonymous_variant p.Leu132Leu
G/A 5915484 intron_variant
G/T 5915485 intron_variant
A/G 5915541 intron_variant
A/T 5915717 missense_variant p.Asn186Tyr
T/A 5915839 synonymous_variant p.Thr226Thr
T/G 5916067 synonymous_variant p.Val248Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24320.1
MASEHNMFHEEDGKDEAGRSRSRSRRTNGKGPKKPPQRGLGVAQLERLRIQESWKKMSEGSSGVLPPVTTLHDHHHHHPQQLFQRHPSPNLGFQFQCPQQHVISGNSTIGGSWIVPNRVVGNGSYGSGPPLLVGTPLETSKELSSIPNLHSQPECFDFCLKKTRFNEDNEKGSNARRERTLEIWPNGHDFLGFMPQSSVSSLVGETGDFYDKLARHDSASAYACATPNDENVEVVAVHRRGNSASGRVFMEYEFFPGKDGRGTTPKELELPTIGSVGVGGGEASSITAAAYGDSASNYIDLSLKLSR*


CDS Sequence:
>Vu_24320.1
ATGGCTTCTGAGCACAACATGTTCCATGAAGAAGATGGAAAGGATGAAGCTGGAAGAAGCAGAAGCAGGAGTAGGAGGACAAATGGGAAGGGTCCAAAGAAGCCACCCCAGAGAGGTTTGGGTGTGGCTCAGTTAGAAAGGTTGAGGATTCAAGAGTCTTGGAAGAAGATGAGTGAAGGCTCTTCTGGAGTACTACCACCAGTAACTACCCTCCATGATCATCATCATCATCATCCACAACAACTTTTTCAGCGCCACCCATCACCAAACCTTGGCTTTCAGTTTCAGTGCCCTCAACAACATGTGATCAGTGGAAACAGCACTATTGGTGGGAGCTGGATAGTTCCTAACAGGGTTGTTGGTAATGGTTCCTATGGATCTGGTCCTCCACTTTTGGTTGGAACCCCTCTCGAGACCTCGAAAGAGCTCTCTTCAATTCCAAATCTCCATTCTCAACCTGAATGTTTTGATTTTTGCCTAAAGAAAACACGATTCAATGAAGACAATGAAAAGGGATCAAATGCAAGGAGGGAGAGGACTTTAGAGATATGGCCCAATGGCCATGATTTTCTAGGATTTATGCCCCAATCTTCTGTCTCAAGCCTTGTTGGGGAAACCGGTGATTTCTATGACAAACTGGCCAGGCATGATTCTGCTAGTGCTTATGCTTGTGCAACTCCCAATGATGAGAATGTAGAGGTTGTTGCGGTTCACAGGAGGGGAAACTCAGCGAGTGGCAGGGTTTTCATGGAATATGAGTTTTTCCCAGGAAAAGATGGCAGAGGCACTACTCCCAAGGAGCTGGAATTGCCCACAATAGGTTCAGTTGGTGTAGGTGGTGGTGAAGCTTCTTCTATCACTGCTGCAGCCTATGGAGATTCTGCTTCTAATTATATTGATTTGTCTCTGAAGCTCTCACGCTAG


Promoter Sequence:
>Vu_24320::LG6:5912931-5914931(+)
AATGTATGTACATCAGATAAAAAAATCTTGGGTTGGTCACGCGGTTTGGGTTTTATGTCCCAAACACACACACACACTCCTCCAAACCAATTCTTAGTTAAGATTTGCAATACTGGTTTGGTCTCATAGGATTTGCGTGTTGGTGTTTCACTTTTGCGAATATCTTGTAGAATACCCCACAACATTGTTGGCGTGCATGTCAAATTTAATTGCCATACACTGTAGATACTACTTAGTTAGTTAGCTATAGTACTGTACTCCAATTCAATTTCCTTTAAGTAACAATTGTTGCAGAGTCTCCTTGCATAATCATAAGGAATAAATTAGAACTAATTAATAATGTGCACTCTATTTTGGAGATATTAAAGAAAATAAAAGAGGAGAGTATATAAACCTTCCTATTATTTGAGAAATGATGAAAGATTTAGATTTTTTTAATTTGATATTCATATTTGATTTGAATTCAGTAACTTCATTAATTTGCTTAAGTTTGGGTTGCAAAATATACTCCAATTTGTTGCAATGCATTAATTGATGAGGAACATTAGATATTGACTGGTTTAGGATTAGGCGGTGATGAAATGATGGTGAAAGATTTTATCCTCAAAGAATGACAGTGAATAATGAAACATTTTAATTGCGACCCACTATTTCAATCAACATATCACGTGATTTGGCTTTCATAACTAAGTTGTGGGTGGTGGAAAATACCCATATTGATCGAATAGTAAAATTCCAACAAAAGAAAATACCAACACAAAAAATTCTGAGGTAGTTAAGTATATGGATATAAGTGGAAGTTGCAACATAGGATAAGTTATATAAATTTCATGGCAGTGATACTTATAATGCTCTTAAACAACTAAACTAGCACTGATCAGTCATTGATTGTTTTACATGATAAAGATTGCAACAGAGGCTACGAAAATACCAGATTGCATGGAACAAATAATCACAGAATCATACTTAAAATATCGGTAAAACTAAGAGGTAAAACTTACTTTTATTGGTCTGAATCACATGAACAATGCTGGGACTGACTAATTAAATAATCAAAAGAAAGAAACAAACTAATCAAATAACTAAAAGGGGATAATAATTTAATCTACAAATATGTCTTCATAGTCATATTGTAGTCTGGCTTTAATCTTAAAGATACAGTTAATAAGAAGTTTAGTATTGCTTTATTAGGGTTTTAAACAAAGTAAGAAGTACATGAGATCCTTGATCATTTAAGAAGTATTATAGATTGAAGTGTATATTGAAATAACTAACGACATGGATATTTTGAATAGAACGATTACTTGGATGAATAGAACATTCTTTTGGGTAGGAGTATTTCTCCATGTAAGTAATCAACAATAGAAGATCACATTAACTATATCTTGGAATCACAGGGAATTGCATAGGCTTTGCGTGGAAACTGTGTAGGAAGAGAAATTTTCCCACATTAGAAGGCACCACATGGGTTCAACTTTTTCTCGTTTCCAAATATGAGAATAGAAAGACCATCATTACAAGCCTATTCCATAGGCAGATTCTCATAATTCATGATCAAATCTTACTCCATATGATTGCCAAAAGACCGTTTTCTAAATGCATTACCGCTTAGACCCGTAGAAACTCATAATAACATGAGCATCGTGATGATGTGCCCAAAATCCTTACTTAATTAAGACAAAAGCAGAAAAAAGAAAAGCAAAAGGAGATTGTTATCTGGAAGAAGCAGAAACATTTGGGAGTGTGGAACTAGCAAAAACACAAAGCAAAAACAAAACCAAATACAAGACCCAAAAGCAAAACACACACACGCGCATAACCATTGTCCTTTCACCATTTCACACAGGCAGTTTCTGCTTTGTTTTCACTGAACTCTCTCTCTCTCTTTGTTTTTCTCTCTCTCTCTATATATATCGCACCTCCTTAAAGCCTATAGCATTTATCAAACACATTCTCTCTTCTGTTGCATTGAGTTTTCTTTTTTCTTCAAACAGTTACCA


Gene Sequence:
>Vu_24320(+)
ATGGCTTCTGAGCACAACATGTTCCATGAAGAAGATGGAAAGGATGAAGCTGGAAGAAGCAGAAGCAGGAGTAGGAGGACAAATGGGAAGGGTCCAAAGAAGCCACCCCAGAGAGGTTTGGGTGTGGCTCAGTTAGAAAGGTTGAGGATTCAAGAGTCTTGGAAGAAGATGAGTGAAGGCTCTTCTGGAGTACTACCACCAGTAACTACCCTCCATGATCATCATCATCATCATCCACAACAACTTTTTCAGCGCCACCCATCACCAAACCTTGGCTTTCAGTTTCAGTGCCCTCAACAACATGTGATCAGTGGAAACAGCACTATTGGTGGGAGCTGGATAGTTCCTAACAGGGTTGTTGGTAATGGTTCCTATGGATCTGGTCCTCCACTTTTGGTTGGAACCCCTCTCGAGACCTCGAAAGAGCTCTCTTCAATTCCAAATCTCCATTCTCAACCTGAATGTTTTGATTTTTGCCTAAAGGTATACATCACTCCCTTCAACACCATGGCATGTGTATGAATAAATAAATTATATGTTAGGTCATTAATTTGGATGTCAAGCAATCATGCTTCTCATTAACGGCTTGTGATTAAGAATGTTTTTGTTTAATTTCTGTTGAATGTTGATGATAATCCTAGTGTTGAATATTTTTATGTTCATTGTTTGTTGAGCATTTTTGTGTGTGTATGTGTATTGCTGTATTTGTCTCAGAAAACACGATTCAATGAAGACAATGAAAAGGGATCAAATGCAAGGAGGGAGAGGACTTTAGAGATATGGCCCAATGGCCATGATTTTCTAGGATTTATGCCCCAATCTTCTGTCTCAAGCCTTGTTGGGGAAACCGGTGATTTCTATGACAAACTGGCCAGGCATGATTCTGCTAGTGCTTATGCTTGTGCAACTCCCAATGATGAGGTAGATTCACATCTATTGATTTATTTTATGATGGATGTTGCTACATGTTTAATGTAACATTATTCTTTAGTGTAGCTAATTTTTTAGAAAACTGTGTACATTTTGAAATTAAGATTGTTTAATAAATGGGCTTATAAATTGGTTGGTTTTTTGTTATGTTAGAATGTAGAGGTTGTTGCGGTTCACAGGAGGGGAAACTCAGCGAGTGGCAGGGTTTTCATGGAATATGAGTTTTTCCCAGGAAAAGATGGCAGAGGCACTACTCCCAAGGAGCTGGAATTGCCCACAATAGGTTCAGTTGGTGTAGGTGGTGGTGAAGCTTCTTCTATCACTGCTGCAGCCTATGGAGATTCTGCTTCTAATTATATTGATTTGTCTCTGAAGCTCTCACGCTAG