Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24416 LG6 7471339 7473556 PREDICTED: probable WRKY transcription factor 69
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   jasmonic acid mediated signaling pathway, response to water deprivation, tryptophan metabolic process, regulation of transcription, DNA-templated, response to wounding, jasmonic acid mediated signaling pathway, response to fungus, organic acid biosynthetic process, plant epidermis development, regulation of transcription, DNA-templated, root development, organic acid biosynthetic process, jasmonic acid mediated signaling pathway, response to fungus, response to water deprivation, organic acid biosynthetic process, anatomical structure maturation, tryptophan metabolic process, regulation of transcription, DNA-templated, root development, jasmonic acid mediated signaling pathway, response to water deprivation, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
A/C 7471341 splice_region_variant
G/A 7471403 3_prime_UTR_variant
G/A 7471427 3_prime_UTR_variant
T/C 7471442 3_prime_UTR_variant
G/A 7471477 3_prime_UTR_variant
C/A 7471546 3_prime_UTR_variant
C/T 7471606 synonymous_variant p.Arg239Arg
C/T 7471699 synonymous_variant p.Glu208Glu
G/T 7471855 synonymous_variant p.Ala156Ala
G/C 7471873 synonymous_variant p.Ala150Ala
G/C 7472133 intron_variant
G/T 7472140 intron_variant
A/G 7472145 intron_variant
T/C 7472158 intron_variant
C/G 7472210 intron_variant
C/A 7472216 intron_variant
T/C 7472222 intron_variant
T/C 7472224 intron_variant
A/T 7472249 intron_variant
A/G 7472277 intron_variant
A/T 7472288 intron_variant
A/T 7472316 intron_variant
C/G 7472370 intron_variant
G/A 7472776 intron_variant
T/G 7472794 intron_variant
A/G 7472809 intron_variant
C/T 7472820 intron_variant
T/A 7472837 intron_variant
A/T 7472842 intron_variant
A/T 7472855 intron_variant
A/C 7472916 intron_variant
A/T,C 7472948 intron_variant
T/C 7472998 intron_variant
T/G 7473390 missense_variant p.Asn3His
G/T 7473482 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24416.1
MYNRRFNKPIQVANPDEPEPEPEPTSEPGPASPSSCDDTKTEAPSPKKRREMKKRVVTIPIGDVDGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYANDHNHSVPLPKSNSSAISAAASPAESAARFPPEEEMAVFSTHSDFELAGDAAVLLSQYHFRWFDDVASTGVLESPICGEVDDVAMPMREEDESLFADLDELPECSVVFRRGNIPRSSAIRCGCITG*


CDS Sequence:
>Vu_24416.1
ATGTACAACCGTAGATTCAACAAACCGATACAGGTGGCTAACCCAGATGAGCCCGAGCCCGAGCCCGAACCCACCTCAGAACCTGGGCCTGCTTCTCCTTCTTCCTGTGATGACACTAAGACAGAAGCACCGTCACCTAAGAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACGTATCCACCGTCCGATTCGTGGGCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCTCCTTACCCAAGGGGATATTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTGGAGCGAAGCCGTGTGGATCCCACAAAGCTCATAGTCACCTACGCCAACGACCACAACCACTCCGTCCCCCTCCCAAAATCCAATTCTTCCGCCATTTCCGCCGCCGCCTCGCCGGCCGAGTCCGCCGCAAGGTTCCCACCGGAGGAGGAGATGGCCGTGTTCTCGACTCACTCCGATTTTGAACTCGCCGGCGACGCGGCGGTTCTGCTCAGCCAGTACCACTTTCGGTGGTTCGATGACGTGGCGTCCACCGGCGTCCTCGAGAGCCCGATCTGCGGCGAGGTGGATGATGTGGCGATGCCGATGAGGGAGGAGGACGAGTCGCTCTTCGCCGATCTCGACGAGTTGCCGGAGTGCTCGGTGGTTTTCCGGCGGGGGAATATTCCGAGGAGCAGCGCGATCCGGTGCGGTTGCATCACAGGATAA


Promoter Sequence:
>Vu_24416::LG6:7473556-7475556(-)
CAAAATAGAAAAGACTGAACAATCATTTTGATACAGTAAATAAAATTTACTGTATTTATTGACTTTTGTAAAATAATCTTAAGTGACGTATAATATAAGCAACGAATGATGAAGTAATAAAATTGAAAAAAAAAAGTATTCGTGGTAAAAGCTTTTAAAATTAATAGTTATCTGAATGGTTTGTAGTAAAAGTCAATGGAAAAAAAAATCAGTGGAGCCAATAAAATTCATAAAAAAGATTCAGGTTAAAAAAAGTGATAAACTACTCTTTGAACTTTTTCTTAAAAGCTAAAATGCTAGTTTTATTCTACTTAGAAAAAGAGAGATTAATTACACGTTTTAGTTGATATATCTAATATTTAAAAATTCTTTTGATAGAACTGAAAAAGAAAAATTAGAAGAATAAATTAAGGAACAAAATTAATAAAGCAAGGTGATTTTATTTTTAAAGAGAAAATCACAGAAAAAGTGGGTGAAGGAAAACTACTTCAATAGTTATAATTTCTTACTCCATCATAATAATTTATTGTCCAACCAACTTTTGTTCTATATTTTTTAATGAGTTATTTTATGAAGTTTTAATTTAATTTTTGAAGATTTTATTGTATACATTATTTTTAAAATCTTCTTACAATGTTTACCTCAATATAAGAGTGTTATAAGATTCACACTATCGTTAATCTTTTATTTTTAGCTTCGCAAAAATATATATTTTTAAGTGAGAAAAATAATTTTTTTAATTTTATGATTTAAGGTCTTCAAGACTTTGAATCTTATTTTTTATGTTATGTTAACATAGTTCAATAGAAAAATTGTTCCATAACTCAGTTATATAATGTTATAATATAATGTATGATCTCTCTACCGATAATGTGTAAAATTTTTACTATAGAACATTATAGAGGAAAATACCTCATAGAGTAAACTCTAGTACAAGAAGTTTTAGTGACGAATGTTTTATATGATATTCTTCTATTGTAAGAGATTAAAAAAATAACTGACCTATGAAAAAACAATTAAGAAATAATTTGTACAGGAAACTAAAGCAACTTATTATCTTTTTATCATCTTTGAACTTAGAAACAAGATTATTATATTAAGTTTTTGAGGATATTATGATCGAATAAAATTTACTAAGATAAGTTATGAGAAGTTGAAATATATAAATATTAAAAATAAAGAATGATAACAATGAAAAAAATATTTATTAGATTCAGTTAAACAATAGCTAATAAAATTTAATCTCAACCCAACAATAATAATGTATTTTCATAAAATCTAATTTATTTTAAGTTATTATTATCTAACCTCCTTTCATCTTTTATTAAGTATAATATATATAATTCTAACTATTATTTCATGATTCTACATTTAAAATTACTCTCCCTTGTAAGAAAATCAGCCGTAACTACTTCTATAGTAAATGGATTAGAAAATAAACATTTGTAATCACATAGCATCATGTGATCGTGACCTTTGATTTGATCCTAACTTTACAAAGAAATTCAAAACTATATGAGGTTATGAGAGTTCGGCTCACATCTTAAAAATATAAAAAGGCAGCAAACATTAACTAAATAAATTAAAAAAATCAGTCAAATTTTGATTTAAAAGTCTGGTTAAACAAGATTGTTTTCACACTTCACTGAAAAATCTAAGAAATTTCACTTGTTAGTTTTAATATACCACAACAACCCAGAAAACTCTAAAACCAGATGCACACGTATTGGTACGATGCCGTGTCACCAAACACAACCTACACAATTTGAAAATACGAAGCATTGCACATATTTTACTAACCCTAGCCAATAGTAATACACTATACACATTCAAACATAGACTAATAGGGTGATGACAGAACAGCCAATGAATGAATTCAAAACATTGTGTATCATGAACCTAACCTCATCAGATAAAACCCCTCCCATGTAGCAGTGTTTTATTAATTGGGTATTTGCTCGCACGTCCACAATAAACTACGCTGCTGCCAATCTGTCACC


Gene Sequence:
>Vu_24416(-)
ATGGCGGCTCATATTAAACACCAACCCCAACCCCTTCTCTCTCACCCTTCTTCTCTTCTCTTCTCAACCCAATCCTCACTCATCACTTCACTATTTCTACAACATATACCAAATTATACAAACATCCACCGCCCAGATTTAGTTTCACTCCAAACCCATCATGTACAACCGTAGATTCAACAAACCGATACAGGTGGCTAACCCAGATGAGCCCGAGCCCGAGCCCGAACCCACCTCAGAACCTGGGCCTGCTTCTCCTTCTTCCTGTGATGACACTAAGACAGAAGCACCGTCACCTAAGAAAAGGTTTTTTTTTTCTTCTTTCTATTTTTCATGGGAACTGAGAGTTGAACGTTGAAAGGTTTACGTTCATGGCACCATACGTAGGAGGGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACGTATCCACCGTCCGATTCGTGGGCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCTCCTTACCCAAGGTATGCTCTATTGTGTTCACCACCTTTACAGGCTTACATTCATTTACCTTAATTGTTTTACTTAACCATAAATTTTTTGCGAGATAAATCACATGCTAATTAGATTAAGTTTGAAGGATGGTAATAATTGGACTGAAGAATGCTAAATATCTTTCAGAACAAGAACCAATTTATTACTGAATCTTATAATTTGAAGTGTGTGGCTGCAGCCGCCGTTGCCGGCGGGGAAAAACCGGCTGTGCTAAAATGCGGATCGGGGTTGTGTTGCGGTGGTAGTTTGAGTGTTGTGACCGCACACGCGACCTACGAACCGCGTTGCCTTCACGCCACAATAATGATGGAATATAAAAATAAGTAGTCGGAAGCCGTCATTTTCTATGTTTGATCTTTTTGTTTATGAAAGTGGCATTTTTTTCTTCTTTTCGGTTTATCCCACTTCGTTTTTATGACTGCGTTTTATGATCTTCGGTTGGATAAGAGCATGCATGTTTTTTTCATGCAACATTGTGTTCATCAGTTTGAATAACTTCCAACTAAATAAAAATCAGTACATTTGCCGAAAAATAATAAACTTATTTACTATTTTTCATGATATGATGTCAACTTTGTATATAACGCAAATATAATTACAGCATTTGTACTAGATATTGTTATTGGCTTGAATTTTTATAAAATCAGTTTAATTTTAGTTTAAATGTGAACATTTTTTTGTTAAATATATAAAATTTAAGGAGATATTGATGATGAATGAGGGAAGACAAAAATAAAAGAAAAAATTGGATTAAAGAATTTGGATTTGAGAAACACGCGCTTGAGATAGGGCAAAATTGATGAAAGTGGCATTTTCGCTGGTATTTTTGGATTATCATCCCAATCCACATCACTCTTCTCTCTCTTAATTTTTCTATTATGATTTTTTCTTTTCATTCAGAATAATGTTGAATTTGAAGCAATTAATAATTAATAATAATAAATTTGAATCTGAAAACGCAGGGGATATTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTGGAGCGAAGCCGTGTGGATCCCACAAAGCTCATAGTCACCTACGCCAACGACCACAACCACTCCGTCCCCCTCCCAAAATCCAATTCTTCCGCCATTTCCGCCGCCGCCTCGCCGGCCGAGTCCGCCGCAAGGTTCCCACCGGAGGAGGAGATGGCCGTGTTCTCGACTCACTCCGATTTTGAACTCGCCGGCGACGCGGCGGTTCTGCTCAGCCAGTACCACTTTCGGTGGTTCGATGACGTGGCGTCCACCGGCGTCCTCGAGAGCCCGATCTGCGGCGAGGTGGATGATGTGGCGATGCCGATGAGGGAGGAGGACGAGTCGCTCTTCGCCGATCTCGACGAGTTGCCGGAGTGCTCGGTGGTTTTCCGGCGGGGGAATATTCCGAGGAGCAGCGCGATCCGGTGCGGTTGCATCACAGGATAACGCGGCTGGACCCTTTATCTTTCGTCCCGCGTTATTACGTAGTGACAAATTATTATATTCGCGGCCTGAAAATCGTGCGCTATTAAAAAATTGGAAACGTACAGAAATAATTAAATAAATTAATTTACGAATCATGGGTTTCTTTTTTCTTCTTTTTTTCTTGCGTTGTACATTTGAATAATAAACAATTAATTACATCATGCTATCTTCTTCTGA