Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24518 LG6 8603001 8606130 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to cold, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to freezing, positive regulation of transcription, DNA-templated, response to freezing, response to cold
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 8603639 intron_variant
G/A 8603724 intron_variant
T/G 8603747 intron_variant
A/T 8603858 intron_variant
C/T 8603892 intron_variant
A/G 8604112 intron_variant
A/T 8604141 intron_variant
C/T 8604146 intron_variant
G/A 8604258 intron_variant
T/G 8604263 intron_variant
T/A 8604264 intron_variant
T/C 8604270 intron_variant
A/T 8604312 intron_variant
T/C 8604319 intron_variant
C/T 8604326 intron_variant
C/T 8604332 intron_variant
A/T 8604343 intron_variant
G/A 8604397 intron_variant
C/T 8604435 intron_variant
T/G 8604481 intron_variant
T/C 8604504 intron_variant
T/A 8604593 intron_variant
T/A 8604693 intron_variant
T/A,C 8604727 intron_variant
T/A 8604746 intron_variant
T/G 8604801 intron_variant
C/A 8604815 intron_variant
A/G 8605277 intron_variant
C/A 8605283 intron_variant
T/C 8605330 intron_variant
A/G,* 8605365 intron_variant
A/G,* 8605367 intron_variant
A/G,* 8605369 intron_variant
A/G,* 8605371 intron_variant
A/G,* 8605373 intron_variant
A/G,* 8605375 intron_variant
A/G,* 8605377 intron_variant
C/T 8605436 intron_variant
G/A 8605499 intron_variant
C/T 8605565 intron_variant
T/C 8605573 intron_variant
T/A 8605645 intron_variant
A/T,* 8605680 intron_variant
T/C 8605773 intron_variant
T/A 8605774 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24518.1
MVRTPCCDKNGLKKGSWTQEEDKKLIAYVTRYGHWNWRLLPKYAGLARCGKSCRLRWLNYLRPDVKRGNFSDEEEETIVRLHGKLGNRWSTIAAELPGRSDNEIKNHWHTVLKKRFQQNSVGTEAVISESLETLSENYSDLNTTSDTSVAASAAAATATNDESYDGLSGLDAYTEPLSVDFWTEPYLVDNSYVPPESEPVYFSPMYEVEIWNQNELFLQECEGLFQW*


CDS Sequence:
>Vu_24518.1
ATGGTGAGAACCCCTTGTTGCGACAAAAATGGTCTCAAAAAAGGATCATGGACACAGGAGGAAGACAAGAAGTTGATCGCTTATGTTACCAGGTATGGCCACTGGAATTGGCGCCTGCTCCCCAAGTATGCAGGTCTTGCAAGGTGTGGAAAGAGTTGCAGACTGAGATGGCTGAACTACCTAAGGCCAGATGTGAAAAGAGGGAATTTTAGTGATGAGGAAGAAGAAACCATTGTGAGACTTCACGGAAAGCTTGGTAATAGGTGGTCAACAATTGCTGCTGAATTGCCAGGGAGGAGTGATAACGAGATAAAAAACCACTGGCACACCGTCCTCAAGAAGCGATTTCAACAAAATTCTGTTGGAACAGAAGCCGTTATTTCCGAGTCACTGGAGACCTTATCAGAGAACTACAGTGACCTCAACACAACAAGCGATACTTCTGTTGCTGCTTCGGCTGCAGCAGCAACCGCCACAAATGATGAAAGTTATGATGGTCTTTCTGGTTTGGATGCATACACGGAGCCTCTGTCTGTAGATTTCTGGACAGAACCTTATTTAGTTGACAACTCCTATGTCCCACCCGAGTCGGAACCCGTTTACTTCAGTCCTATGTACGAAGTTGAAATTTGGAACCAGAATGAGCTGTTCCTACAGGAATGTGAGGGTTTATTCCAATGGTGA


Promoter Sequence:
>Vu_24518::LG6:8606130-8608130(-)
TATAAAACGTCGAATGCCCTAGCGTTAGACGTCAAAATGTTAGTGAATTCAATGAAAATTGAGTGGGAGATTGATAATTCATTCACTTTATCTTAGCACGCAAGACATTTTTCTCTACTCAAACTTTTCTCGAACGAAATTTGACAGCCATCACATGTAATCTTTCTTTCATATGATAAAAATGCATGTTAATTAACTGCTTAAGGTATAATTTTCGTTTGTTTTGACAAAATATTTTCGTGTTCTTGTACTTCATAGGCACATTCTGCTTTCTTTCTCACCGATGACAACACTTTATTCCGACGAACCCACCTTTTGAAGCTTAGTTTTCGTTTTCGTTTTGAAGAACTTATTTGTTAAACTTGTTTTTTGTTGTTGTTTAATTGAACTTGTTTTTTGTTGTTGTTTGGTTGAAGTTATTTGTTGTTGTTGTTTGATTGAACTTGTTTGTTGATGTTGTTTGTTGATGTTGTTTGTTGATGTTGTTTGTTGTTGATACTACACTTTTCTAAATTCGACATCAATTTAACGTCTACTGATATGACGTCAACTTTGAATTCGACGTGAAAGATAAAAAATACCAACGTTATACAATGTTTTGTACTAGTGAATGGAAAAAAAAAAGGTAATGAGAAAAAAAAAGAGATAGCATTAAGAAAATTCTTGATCTTAATTAGAAATGGTTACTCCAGAATGTTGTAATCTAAATAATACTCTATAGATAATTGTTGTTATGTTTCAAATAATATTATCTTAACTTGGTTCAAATAATACTCCATTATAATTAAAAGTGATTAAAGTCTAAAAATTACTCACTTTGTATTTTTCCAGCGATAATCCTATGATAAAATCTGATCATGCTAATCAACCATTAAACTTAATATGTGCTCTATACAAACTAATATAAAACATCAAGGATCATTTTTCTATACTCTAATATATTTGTATTGCATCGTATTTAAGCCAAAACAACATGAACTATTAGCATAATACATGGACTACTAGTATAGCTCGCATCTCTTTATCTCTTGAAAATAAATTTTGGTCTTGCTTTTAGATTTATTATGGCTTATGTTAGTATATTTAGATTCAAATTAGGTTTTATTCCTAATAAACTAACAGAATGTGTTTTCTTTTCGCCTCCAATAAATTTTTTTACTTTATTTTTATCTTAAAAACAGTGTAAATTACTTTATTCTATTATTGAAAATGTATCTAAATATCTCACAAGGAAAAAAAATACCCGAAAGGAAAAGCTAAAATAAAATAATCAAGATCATGAATAAAATCCGATAATTGTTTAGAAATATAAATATACTTATAAAGTCAATCATATCTATAAAGATTATTTTTTTTATATTTATTTTCCAATTTTACTCTTTAAATAAAAATTTTGTTTAAATTAAAATATTTATATTTTCAATTTTATTTTTTAAGTGACCGATTTTTTAAATTTAATCAATTTTTATTTGAAATTGTTTAAGCTTAACTATTTTTAATTACAAAATAAAAATCAAATAAAAACTATTTACAATAAAATTACAAAAATGATTTTAATTTAATAATTATGATAATAATTATATTAATAATAATAATAATTTTATTATTTTTATTATTATAAAAAAAAGAGTGCGTTTATTTTCAGTATTATATAATAATTAGATTTCCTTACTCATAATTACTTTCTATCATTTCATTTTTCCTTCCATCACTTCTACTCGGTTTTATATTACTAAATTATCTTGGTACGAAAATATGTCTTTTCCCGAATTATATCATTACGTTGTGATCGTGGAACACGTTCACTTGTGAACGCTGCTATATAGGAGAGGAGAAAAGACTCCAGATTTTCTGGTGAGAAGCGAAGAAAATAGTAAACTAAGTCTTTGTCCGTTGCTTCTTCTGTTTCCCAGTCTTAGGTTTAAGTTGAAGATCACAGTCCACGAAACCATAGACAGAGTCACAAGCATATTGGAAACAAACAGCTACACCCTGCAGAC


Gene Sequence:
>Vu_24518(-)
ATGGTGAGAACCCCTTGTTGCGACAAAAATGGTCTCAAAAAAGGATCATGGACACAGGAGGAAGACAAGAAGTTGATCGCTTATGTTACCAGGTATGGCCACTGGAATTGGCGCCTGCTCCCCAAGTATGCAGGTACATGCATTCCTACTACTCTAAGCTTACATTTTATACTTTCTTCTACACAACATTACTCTTCAACCCAATATTGTTGACCTAATGGGGAAGTCATTTGCCAAATTTTCAAGAGTTTTTAAGCTCAAGCTTCTCGTTTTATTTTGAATGCCCAAAAAGCTCTATCAATTAGTCTTGAATCCACCTGTTGTTTTTTCTTCTGCAAATAAATTATATGTATGTAAATGTTTACAAAGTACATGGTTTCATCTGTAATTGTTTCTTAAGCCAAGATATATGATGTTAACATATGATGTTAACAGTATATGTATATACCTTAGCTCAATCAGTCTCCTTCAGATACACAGCTCTAACTTCTTTCGGTATCAAACCTTGTGAATCCACTGTTGTGATCTAATGGTCAATTTATTTGAATAATTTCACCAGTTTTTAGGTTCAAACTTGATTGTTGTCATTGTATATTACACACACAAAAATAACATCTAGTCCATAATCCATCATCGCGGACCTAATTAATGGTGAAGTTATTTGAATAATATTCATGAGTTTTTGGGTTCACGAGTTTCAAACTTCATTGGTTTCATATTATATATATATATATATATATATATATATATATATATATATATATATACACACATACATACATTTACAAACACACACATATATAGTACACACAAAAATAATACCTGAGAGATTTTCTACTTTGTCTCTGAGTCATGCTGGATTTATAGCTCTAACCATGTTGATTTTTAGGTCTTGCAAGGTGTGGAAAGAGTTGCAGACTGAGATGGCTGAACTACCTAAGGCCAGATGTGAAAAGAGGGAATTTTAGTGATGAGGAAGAAGAAACCATTGTGAGACTTCACGGAAAGCTTGGTAATAGGTATGTATAAATTACTGGGTCTGGTACTACTGTTTCTTCTGAGTTTGCACTACTCAAAGTTCACTTTGGTCGCGCAAAAAGCTGAACACATTCTCATGAATCCGATTACACCATTCCCAGTCGCATTGTAAGTTTAATATAGGATTCAATCTGCCGTATATCATAAATTGACCTAGATTTTAAGAGTTGAACTCTTACTCACCTCACTCACTCAATTATATTTTGTCACTCAATTATATGTATATTATCCCGTAATCTATTAATTTGTTTCTAAACTATCCCAAACTAGACTTCATGCATGTTAATTTTGAAAGTACGATTTTATTAACCCTATACGTTTTTAATCTATTATCTTTTTTTAAAAAAATCAGTAATTTTTAGAAAAATTTTCAATAGTTAAAAGTAATCTTATGTAAGAATTTAAACTAATTTTTATAAATATAAAATACAGTTTATTTATGATAACTTTATTTATATTGCTTATATACTAGATATATTTTATAACTTCTTTTATAAAAATAAGGTTATTTTATCCTACACCTCCAATCATTTCATCTGCATTTCCAAAATTTTTTAAAAATTCACAATTACCTTCTATAATTCAAAAAGCTCTACACTCATCTATAGTTTAATCAGATTTTGAATCCGATTAAGGATTTTTTCTTCGTTGAATTTTGAAATTTGATGAAGAATTTTTTTATCAGATTTTGAAATCTGATGAAGTTTTTGAAAAATCTTTCGATAAATTTTGAAATTCGATAAAAAAATTTTTTTTATCGGATTTTGAAATCCAACGAAGTAAAATATAATCCATAAGAATATTTTTTGAAATTGGAGGTCCAGAATCAACAACCTAAAAATAAATGTCCATGTTTAATATTAAAATAGTAAAAACCAGTCTCAAGTCCAAAAGACATAATTATGTGGTTATGTTGCAATTTACATGTTCAACTTTGTTACAAAAAGAAAATTTTATGTATGCTATAAGAAAATCTAAGCTGACCTCACACGTCTAACGTCACCCAGTAATATAATATAAAAAACATGGTTTATTAATCTGTAATAAGAATTTAATTAATATATATATATATATATATATATATATATATATATATATTTATAATATTAGATTTATAATACATAAAACTTTATGTTATCATATTAGTAAAAATAGTTTTGAGAACGATTTTTTATGATGGATAATGTAAAATAGTTCTGTGACGATTAAGTTTGAATAATTGCTTCAGTTCCTCTTAGTCTTATTGGAGAACTTAAAGTTATTGTCTACTTAGCCAATGAAATTATGAATTATGATATAACTAAAGCTTTTGAAACACTTCAACTATAGGGCTTGTTATATTATAATATTTTCAAAAATAGATGGGCACAAAATAGACCGATCATAAGACTTTGTGCTGAAAGACACGTCTTTATAAAATATCTGAATAATTAATAAAGCAAAATTTATTAGAGTTTGAATGATAAGCGAAACGGAGACCAAAACTGTGTGAAAAGTAGTACCAGACACAATTCTTTTCGAAATTAAGAGCGTGAGAAGGACTGATAAAACAATATTTGAATACATGTTATTGTGTGGTGTGTTTGAACTAGGGTCATTAATTTCAGTACGAAAATTATTATGTGGTGTGCTGAGCTTGGGTTTGAAATCAGTAATTTCGTGGTTGTGAAGGTGGTCAACAATTGCTGCTGAATTGCCAGGGAGGAGTGATAACGAGATAAAAAACCACTGGCACACCGTCCTCAAGAAGCGATTTCAACAAAATTCTGTTGGAACAGAAGCCGTTATTTCCGAGTCACTGGAGACCTTATCAGAGAACTACAGTGACCTCAACACAACAAGCGATACTTCTGTTGCTGCTTCGGCTGCAGCAGCAACCGCCACAAATGATGAAAGTTATGATGGTCTTTCTGGTTTGGATGCATACACGGAGCCTCTGTCTGTAGATTTCTGGACAGAACCTTATTTAGTTGACAACTCCTATGTCCCACCCGAGTCGGAACCCGTTTACTTCAGTCCTATGTACGAAGTTGAAATTTGGAACCAGAATGAGCTGTTCCTACAGGAATGTGAGGGTTTATTCCAATGGTGA