Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24580 LG6 9368815 9371178 PREDICTED: transcription factor GAMYB-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, regulation of pollen tube growth, positive regulation of transcription, DNA-templated, pollen sperm cell differentiation, regulation of pollen tube growth, gibberellic acid mediated signaling pathway, regulation of gene expression, pollen development, regulation of leaf morphogenesis, positive regulation of transcription, DNA-templated, response to gibberellin, positive regulation of abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, pollen sperm cell differentiation, positive regulation of programmed cell death, positive regulation of transcription, DNA-templated, positive regulation of abscisic acid-activated signaling pathway, response to gibberellin, pollen sperm cell differentiation, positive regulation of transcription, DNA-templated, regulation of pollen tube growth, pollen sperm cell differentiation, regulation of leaf morphogenesis, regulation of pollen tube growth, regulation of pollen tube growth, regulation of pollen tube growth, gibberellic acid mediated signaling pathway, regulation of pollen tube growth, pollen sperm cell differentiation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of pollen tube growth, regulation of pollen tube growth, regulation of pollen tube growth, positive regulation of abscisic acid-activated signaling pathway, pollen sperm cell differentiation, positive regulation of abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, pollen sperm cell differentiation, regulation of pollen tube growth, gibberellic acid mediated signaling pathway, regulation of pollen tube growth, regulation of pollen tube growth, positive regulation of programmed cell death, regulation of pollen tube growth, protein storage vacuole organization, positive regulation of abscisic acid-activated signaling pathway, regulation of pollen tube growth, regulation of pollen tube growth, positive regulation of transcription, DNA-templated, gibberellic acid mediated signaling pathway, pollen sperm cell differentiation
Cellular Component   located in   nucleus, nucleus, pollen tube, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 9369058 intron_variant
T/A 9369172 missense_variant&splice_region_variant p.Lys397Asn
T/C 9369301 synonymous_variant p.Arg354Arg
T/C 9369318 missense_variant p.Lys349Glu
C/T 9369359 missense_variant p.Ser335Asn
A/G 9369394 synonymous_variant p.Asp323Asp
G/T 9369417 missense_variant p.Pro316Thr
T/A 9369456 missense_variant p.Asn303Tyr
A/T 9369457 missense_variant p.Asn302Lys
G/A 9369499 synonymous_variant p.Val288Val
C/T 9369517 synonymous_variant p.Ser282Ser
C/T 9369807 missense_variant p.Gly186Ser
G/A 9369818 missense_variant p.Pro182Leu
G/T 9369829 stop_gained p.Tyr178*
G/A 9370203 intron_variant
A/T 9370279 intron_variant
C/A 9370339 intron_variant
T/C 9370400 intron_variant
A/T 9370423 intron_variant
G/A 9370483 intron_variant
A/C 9370519 intron_variant
G/A 9370521 intron_variant
T/A 9370551 intron_variant
C/T 9370584 intron_variant
G/A 9370632 intron_variant
A/G 9370900 synonymous_variant p.Pro93Pro
G/A 9370969 synonymous_variant p.Cys70Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24580.1
MARTVSNNDITNDETGDDSNATTKEEGEVKGRVRKGPWTPSEDAILVEYVKKHGEGNWNSVHKNSGLFRCGKSCRLRWANHLRPNLKKGAFSPEEEQIIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPIYPPELHAEATAFNLQHRYLEDIPHSSFALLLSSCYPKKPDDPGQTNGFNANPLQNHPDSANFYINPSLKHFKFSNDNGGSTNLALPLSPLSQYGSSSSTLLNHSFGDHGIISGSPYESFPLVSGSTPDISSNQTPTPASSYASGVDGLMGSSTMANNNNNNNDYYEVAPLSPPGNSGLLDALVMEAQGLSHSDKSKNEEDPTLAGKLSCKRKNMEYADEGRTEPMVSAMKKNSSNCTTTENQRDDDNSFSQLSKGKKVMREDPMEEMNSMDDDLFSLLNQFPLETPMPEWYRRGESQSLGLENQPNASPPDPADQEYAWTLGTCWNNMPSIC*


CDS Sequence:
>Vu_24580.1
ATGGCGCGGACAGTCTCTAACAACGACATCACCAACGATGAAACAGGCGATGACAGCAATGCTACAACGAAGGAAGAGGGCGAGGTCAAAGGTCGCGTGAGGAAGGGACCCTGGACCCCATCAGAAGACGCCATCCTTGTAGAGTACGTGAAGAAGCACGGTGAAGGGAATTGGAACTCCGTGCACAAGAATTCTGGGTTGTTCAGGTGCGGCAAAAGTTGCAGACTTCGCTGGGCAAACCATCTCAGGCCTAATCTCAAGAAAGGTGCATTCTCTCCTGAGGAAGAACAAATCATCATCGACCTTCATTCCAAGCTTGGAAACAAATGGGCCAGAATGGCCGCACAGTTACCTGGCAGGACCGACAATGAAATAAAAAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTACCCATTTATCCTCCTGAGCTGCATGCAGAAGCCACTGCATTCAATCTACAACACCGCTACTTGGAAGACATACCTCATTCATCATTTGCTTTACTCCTATCTTCTTGTTACCCCAAGAAGCCCGATGACCCTGGCCAAACCAACGGTTTCAATGCCAATCCGCTGCAAAACCATCCTGATTCTGCCAACTTTTACATTAATCCAAGCCTGAAGCACTTCAAGTTTTCCAATGACAATGGTGGAAGTACAAATCTTGCTTTGCCATTATCTCCTCTTTCTCAATATGGATCATCATCATCCACCCTTCTTAACCACAGTTTTGGTGATCATGGCATTATATCAGGGTCCCCATATGAATCCTTTCCTTTGGTATCAGGGTCCACCCCCGACATCTCTTCCAACCAAACACCAACCCCTGCTTCGTCCTATGCTAGTGGTGTCGATGGCCTGATGGGATCTTCAACCATGGCTAATAATAATAATAATAACAATGACTACTATGAAGTTGCACCGTTGTCTCCTCCAGGAAACAGTGGACTGCTGGATGCTCTAGTGATGGAGGCTCAAGGACTTTCTCACAGTGACAAGTCCAAGAATGAGGAGGACCCGACCCTTGCTGGAAAACTATCTTGTAAGAGAAAGAACATGGAATATGCGGATGAGGGACGCACTGAGCCTATGGTGTCAGCCATGAAGAAGAACAGTAGCAACTGTACTACTACTGAAAACCAGAGGGATGATGATAATAGCTTCTCTCAATTGTCAAAAGGGAAGAAAGTGATGAGAGAGGATCCGATGGAAGAGATGAACTCGATGGACGATGATTTGTTTAGTCTGCTGAATCAGTTTCCCTTAGAAACGCCAATGCCTGAGTGGTACCGTAGAGGGGAGAGTCAGTCATTGGGACTTGAAAATCAGCCGAATGCTTCACCACCTGACCCCGCTGATCAAGAGTATGCTTGGACTCTAGGAACTTGCTGGAACAACATGCCCAGCATATGCTAA


Promoter Sequence:
>Vu_24580::LG6:9371178-9373178(-)
ATATATTTTGGTAGTTCAATAAATCAAAGTTTAGGCTAATTGATTTTTTTCATCAATGCTATAGTCAACACTTATTAATTTTATCGTTATATATAATACATGTTAATTAAATTTAGTCAATAATCAAATTTATTATATAGTTTTGAATAACTTTTTAATCAAATAACAATTATTAATCAATATTAATGTCATTAAATGTTTTTTACACTAAATATCTATTTTTTTTATTTTGATGTATTTTCAACCTGGTATATGACTTTAGAATAATTATAGAACAATTAAAAATTTAAAGATATGGTAATTATTTATTGACTGACATTGTAAATTTTGTTTAGAAGAACGGATTAAGAGGCTTATTATTGATTGATCGCTAGAACATTTCACTATTATTTTAGTGATATTATAATTTGTGACTGAGTTTCAAAGATTTTGAGATAATTATTGATTTAGGTCTTCCCCTTTAGATAATTGTAGTTTTTTTCCCTAATATTTATTAGTTAAAAGAAAACTTAGTCAAGGGACCTCCTTTCATTTCAATTTGACTAATTACTTTGTGTTGATTCAATTTAATTTACAGTTCAGAAATATATAAACTTGAATAAATCAGCCCAACCTTATACTTTCCCGTTTCCATATAAACAAAAATACGTAACTTGAATATGTACACACATCATTATAATATATTTAAACTATTGATTATTAATTATAAAGAGATATAATTTTTTTGTTTTGATTAATTATTAACAGTCAAAATTTATATTACAGCCAAAATGTTATTATTAATAAAAGTCAAAAGTGAGACAACCAAGATAAATATGATTTATATTTTCTAATGAAAAAACAATCATTTAAAGCACTGATAATACATAGATAATTATGATTGGAATTCGAAACTTGGTATATAATGTATAAGCATAATTTGGACAGTAATTTATTAATTTTTATGACAAATGCATATATTGAAATTTCAAAATAATATGATCAGTAAAACCTCATTTCTATTAATGAACAGAAAATGGAGAAAAAATTTCCATAAATGGCTTAATAACTATCATTGCTGAAATTTTGGGACATAAAAGAAAACACTTAGAAGTCTATTACAAGAAAAACACAGACAATTCAAGAAAAATGTGAAGCCATCACCTTTTTTCTCCCAGACTTCCTATACACTCTTTTCTTTCTTTAATTTCCTCATATTTTCAACTAAATTCTCCTTTATTATTCTTACATGTAAAATAAAACTGTAATCATTACACAACACATTATTCAACCTAATAAATTTGTATACCGTAACTTGAACACTCAGGTTACATTTTTCTTTTTAATTATATAGCCTCAAATTTATCTCTTATTTATAGAAAAAATAACATAAAGAAATTATTAAAATAATTATTTATCAAAATAATTAAAAGTACTATATAATATATAGTAGTGGAGTAAAAAAAAGGTGAAAATGAGAAGCAGGAAAAAGAACGTAGCACAGAGCATGCAAATCGGAGCGAAATTATAGCTCACACCTCTAATGACATATTTCACCCTTTGTCTCTCTTTCTTAGTTTTTTCTTTGTTTCGAAACACCAAATTAACCTTAGCAAACGCTACCTTTGCATTTGGCCTGGGCCCCACACGCTCTTCTTTCTTTCTTTCTCTCTCTGCATCTCCCACCTTCTTCTTCTCCATAAAATCCAAGTTTCAACATCAAATCCAAACAAAACAGAAAACGAAGCAAAGAGAAGACAAAGGGCAGAAGGGTTTGTTCCCTTTATATCTCTCTGTCTCTTCTTCATTCTTCACCACCATTTCATCTCTCCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTTCCACCCTTTTCCATTCATTCTCCTGAGAGGAGAGAGACAACAACAGCAACATCACCATCACCATCACCATCTCTCTGTAATTAAACAAAACAAACATTCTCCTATACACCACCTTCTCCTGTAACGCCCGGACCTCGCATTCTGTGAATTGTAGCTGTT


Gene Sequence:
>Vu_24580(-)
ATGGCGCGGACAGTCTCTAACAACGACATCACCAACGATGAAACAGGCGATGACAGCAATGCTACAACGAAGGAAGAGGGCGAGGTCAAAGGTCGCGTGAGGAAGGGACCCTGGACCCCATCAGAAGACGCCATCCTTGTAGAGTACGTGAAGAAGCACGGTGAAGGGAATTGGAACTCCGTGCACAAGAATTCTGGGTTGTTCAGGTGCGGCAAAAGTTGCAGACTTCGCTGGGCAAACCATCTCAGGCCTAATCTCAAGAAAGGTGCATTCTCTCCTGAGGAAGAACAAATCATCATCGACCTTCATTCCAAGCTTGGAAACAAATGGGCCAGAATGGCCGCACAGGTATATATATATCTATATCTATATCTTCACATAAAAATGCTTACTTAAACTTTTTGGGGTTTGTTTCTTTTTTTTGGCTTATGTTCGTGTCATCATCGTTTCTCTTCTCTTATGTGTTTAATTCATTTGTTTATGGTCAGTGCAGCCTTTTTCCTTTTTCGGTTTCGGAAGTGAACACCCATTGGTTTGTAATTTGTTCCATCTGTGATTTGATGTCTGGTGGCGTGGATCTTTTCTACCACCCGCGCTGTTGACATGATTTGCATGATTTTTGCTTCTAGCCTCTTTTTTCTTTTTTACTTTCCTGATCTTTATCTGCTTGAGATCTGCTAAATTTGATTTAAAAGCTATCCATCGATGGCAAAGAACCAGAGACAGAGAAAGGGTTACCTTCCTGCTCTATGTGCTTATCTGTTTGTGTTGGGTTACAATTTTACTGGGTTTAGTTTCCAGCAATGATTATCAGTAAAACATTAAATGTTGAAGCTTTTGTCATAAAAAAAGATAATCTCGCTTTCTTACCTTTTGAACTTCAATGGAGTTTATTTTTTTGCTTGTTTTCCCTTTTCGTTTTAATTAATTACAGTTTCATGCATATTGTCAGATTTTGGATTTTGTATGAGCTGACCTCAGTCTTTTTGTCTGAATATATGGAATTGGTATCTTTGTTTATTTCTTTCAACAACGTACTTTCATCAGGACCCACTCGAGTTTTCTTTTGCCGAGGCTAAACACCAAACTTTATCAAACCTTTACGTGATTTGGTTCGCCCACAACCTGTTTCTCTCACCATCTTTATCATGTTTCTGGTTTCAGTTACCTGGCAGGACCGACAATGAAATAAAAAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTACCCATTTATCCTCCTGAGCTGCATGCAGAAGCCACTGCATTCAATCTACAACACCGCTACTTGGAAGACATACCTCATTCATCATTTGCTTTACTCCTATCTTCTTGTTACCCCAAGAAGCCCGATGACCCTGGCCAAACCAACGGTTTCAATGCCAATCCGCTGCAAAACCATCCTGATTCTGCCAACTTTTACATTAATCCAAGCCTGAAGCACTTCAAGTTTTCCAATGACAATGGTGGAAGTACAAATCTTGCTTTGCCATTATCTCCTCTTTCTCAATATGGATCATCATCATCCACCCTTCTTAACCACAGTTTTGGTGATCATGGCATTATATCAGGGTCCCCATATGAATCCTTTCCTTTGGTATCAGGGTCCACCCCCGACATCTCTTCCAACCAAACACCAACCCCTGCTTCGTCCTATGCTAGTGGTGTCGATGGCCTGATGGGATCTTCAACCATGGCTAATAATAATAATAATAACAATGACTACTATGAAGTTGCACCGTTGTCTCCTCCAGGAAACAGTGGACTGCTGGATGCTCTAGTGATGGAGGCTCAAGGACTTTCTCACAGTGACAAGTCCAAGAATGAGGAGGACCCGACCCTTGCTGGAAAACTATCTTGTAAGAGAAAGAACATGGAATATGCGGATGAGGGACGCACTGAGCCTATGGTGTCAGCCATGAAGAAGAACAGTAGCAACTGTACTACTACTGAAAACCAGAGGGATGATGATAATAGCTTCTCTCAATTGTCAAAAGGTGAAACTTTTTCACTCTTCTGGTTGTTTCATATACTTTTTCACCTCAATTGTCAGGAGATTTATTAACAAAGCTGTAATGATGTGTTAAATTTTCATGATTTGGATGTGTAATATGCAGGGAAGAAAGTGATGAGAGAGGATCCGATGGAAGAGATGAACTCGATGGACGATGATTTGTTTAGTCTGCTGAATCAGTTTCCCTTAGAAACGCCAATGCCTGAGTGGTACCGTAGAGGGGAGAGTCAGTCATTGGGACTTGAAAATCAGCCGAATGCTTCACCACCTGACCCCGCTGATCAAGAGTATGCTTGGACTCTAGGAACTTGCTGGAACAACATGCCCAGCATATGCTAA