Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_24585	LG6	9429648	9430835	PREDICTED: mitogen-activated protein kinase kinase kinase A-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	cellular response to oxygen-containing compound, protein phosphorylation, protein phosphorylation, defense response to bacterium, defense response to bacterium, protein phosphorylation, defense response to bacterium, cellular response to oxygen-containing compound, response to wounding
Cellular Component	located in	nucleus
Molecular Function	enables	protein kinase activity, protein kinase activity, protein kinase activity
Pathway	B 09132 Signal transduction	C 04016 MAPK signaling pathway - plant [PATH:ko04016]

SNP	Position	Effect	Amino acid change
A/T	9429727	missense_variant	p.Val370Asp
C/T	9429736	missense_variant	p.Cys367Tyr
T/A	9429738	missense_variant	p.Lys366Asn
T/A	9429807	missense_variant	p.Arg343Ser
A/G	9429814	missense_variant	p.Val341Ala
C/T	9429903	synonymous_variant	p.Arg311Arg
G/A	9429943	missense_variant	p.Ala298Val
C/T	9430251	synonymous_variant	p.Gly195Gly
C/T	9430542	synonymous_variant	p.Arg98Arg
C/A	9430629	missense_variant	p.Glu69Asp
T/C	9430794	synonymous_variant	p.Ser14Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_24585.1

MEWTRGFIIGRGSSATVYTATSAHSSTVAAVKTAELSPSNSEKLQREQRILSSLFSPQVVAYKGCNTTEENNTLWFNLFMEYMPFGTLSQEIRRHGGRLSEPTIVNYVRQVLQGLEYLHNKGVVHCDIKGSNILIGEDGAKIGDFGCAKLWNESPVAAIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNLEDPVTVLYRVAYSNEVPEIPSFLSEEAKDFLGKCFRRNPKERWNCSELLKHPFVGELSSNDKDIEQSNSCSPTSILEQSFWNSVEEAECVSDPGNAIQIKSSDESPKGRIRRLALCSGDPIWELDDENWITTRGSEAGVSRCEGLDLDVVNIRISDYFCDDYYKCSDVSVEVGSFNFEGGVDEMVIPSTFEFL*

CDS Sequence:
>Vu_24585.1

ATGGAGTGGACTAGAGGCTTCATCATAGGACGTGGCTCGTCAGCCACCGTCTACACCGCCACCTCCGCCCACTCCTCCACCGTTGCCGCTGTCAAGACTGCAGAGTTATCCCCGTCAAACTCAGAAAAGTTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCAAGTAGTTGCCTACAAAGGTTGTAACACTACAGAGGAAAACAACACCCTGTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAACTCTCTCTCAGGAAATTCGCCGGCACGGTGGTCGGCTCAGCGAGCCGACCATCGTGAACTACGTTCGACAAGTCCTGCAGGGGCTGGAGTACTTGCACAATAAGGGTGTTGTGCATTGTGATATTAAAGGTAGCAACATTTTGATTGGGGAAGATGGGGCCAAGATTGGGGATTTTGGGTGTGCTAAGTTGTGGAATGAGTCTCCGGTGGCGGCGATCGGGGGCACGCCAATGTTCATGGCCCCAGAGGTGGCGCGTGGGGAGGAGCAAGGGTACCCTGCTGATGTATGGGCGCTTGGATGCACTGTGGTTGAAATGGCCACTGGGTTTGCTCCGTGGCCTAATTTAGAAGACCCTGTAACTGTGTTGTACCGCGTTGCATATTCCAATGAAGTTCCTGAGATTCCAAGTTTTCTGTCTGAAGAAGCAAAGGATTTCTTGGGGAAGTGTTTCAGGAGGAATCCTAAAGAGAGGTGGAATTGTAGTGAGCTTCTGAAGCATCCGTTTGTTGGGGAATTGAGTTCCAACGACAAGGATATTGAACAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGAGCTTTTGGAATTCTGTGGAAGAGGCAGAGTGTGTCTCTGACCCTGGCAATGCGATTCAAATTAAAAGCTCTGATGAGTCTCCGAAGGGTAGGATCAGAAGGCTAGCTTTGTGTTCGGGGGATCCAATTTGGGAATTGGATGATGAAAATTGGATCACAACGAGGGGCAGTGAAGCAGGGGTTTCAAGATGTGAAGGGTTGGATTTGGATGTTGTTAATATTAGAATTAGTGATTATTTTTGTGATGATTATTATAAATGTAGTGATGTTAGCGTTGAAGTTGGTAGTTTCAATTTTGAGGGAGGCGTTGATGAGATGGTTATCCCTTCAACATTTGAGTTTTTATAA

Promoter Sequence:
>Vu_24585::LG6:9430835-9432835(-)

CATTCAACTCACTTTTTTACTATAATTCATTAGTAAAGCCAAATCAGATACATCCATCCAATTGTTTCATGCCATTCAAAAGGGAAAAAATGAACGTACTTCATTTTGCAATGTGTCACTATGAAATTATGATGATTGCTTTGGTAATAAGTAGAAACCTCCCATTAGAAGGGTTGTTTCTGCATTAACCAATCCATCTTCTAGAAGTAAGCGTGGAGTAAAGTAGCAGTTGGTACTTTCTGATTTAATTTTCAGAAAGTTTTTCAACAACTTATTAAAGTACGTTGCACTTTTTCATGAAAATATTATGATGCCAAATGATTGAAAAGTAAATATTAGAAAAAAAAAAATCAGAAATGGTGTTAGTATCACAGTATGTTGGCCAATCCAAACTCTTCCAGTACTACTCAGCTTTCAATGAGTTTCAACCCTTTGGTTTTTCAAAACTGCAAAATATCATCCTCAATCCAACATCAATTGAAATGCACTTTTTCAGGGCAATGTTTTTGAAGCTTCTTAATTATAGATTTCCAATCAGGAATGTAAAAACAAAACATTTATATATAGTCAGAGATCAGGTTATTCCTACACTCAAAAAATCACCTACTGCTGCTAACTCATCTATAATTAATTCATTTCAGCTAATGCCAAATCAACCAAGAGAATTTGACTAACTGGGTTTGTGAAAATGAAAATATAAAACATAGGATAAGGTTAACAAACCAGCTACTTCTTTGACCCATAACAGTGCATAAAGGAAAAATATTCTTTCAACCACTAAATATTTTACATTCATTTAATACTATTTTTCTTACTTTTTCCTCTCTTCTTTCTTTTTAAAAAATATAAAACTTTATATTTATATGACCATTTTATTCTTATATCTTATGTTAAATAAATGTAAAAGTATGTCATGATACAATTTTTTGTGCAGAAAGATGAATCTTTCTATCTGCAATTTGACTTGTAACAAAACTTATACGCGTTGTGTAGTATTTTACTCAGAAAAAATGATTCTTTGACACACCTAAATTTTTTACATTTATTTAATACTATCCTTATTTATTTTTTACTCTCTTCTTTCTTGAAAACATTCAAAAATTTATACTTTTATGATATTTTTTACTCTTATACTCAAATGAATATGAATTAGTGTTATAATATCATCGGTCTTTTATTTATTTTGAAGCCATTGTAATGTGTCAATCCTGTATGCTGACATTCAGAATACAAACCAAAAAGAAAACCTTGGATGAGAAAAAAAGATAGTAAAGTTGAACCAGATTGGTGGTTGAACCCACCCCTTAAACCTCCCATGTTCACTTTTTGAAAGTGTAGCCAAGTATTATACAAAAAACAATGAATCCCCTGTTATCTACCTAACCCAAAACTCTTACTTCCCTTACACCAAAATTCAGACCAACACACTCAAAAACACTTTCATTCTTTCTTGTCCTCACCACTAAAATACCACACCCACCCAAAGTAGGCCACGTCTATGCACTCCCGTTGAAGGGATACTCACCTTTACAAGGGACAAAGATAAAAGCATTCAACCGCAACCAATCAAATCATAACATATGCTTGTATAGATAAAATTAAATAAAAAATTAAACTTTTATCTTATCTCAATTTTATAATTTAATAATGTCTGTTTTACATATAAAGCATAATAAATAGCTTTTAATGAATTGACCTTGTAAAAAAATGTAGCAAAGTTTTTATTAGGTAAAAATATGCAGTACATTTTTTTGCTGTCAACTGTGTCTTAACTTATTAGGTAAAAGATTAGCAGAAGGCAACTGTTATTTATTCGCAGAATTTCCTTACAAGATATAGATGAAGTATAGGTTTTGTTTTCAACGTTTATACCAACACTAAATAAAGTAGTAAAATAAAGCCTTTAACTCAAACCAAAAGTGTGTCCTTGTTTATTATATAAATGCCGCAATTGCAAACCCAAGACTCTGCACTCTCTAAGACAGAGCCTGACAAACAGC

Gene Sequence:

>Vu_24585(-)