Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24650 LG6 10156066 10158492 PREDICTED: NAC domain-containing protein 40
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, seed germination, photoperiodism, flowering, positive regulation of transcription, DNA-templated, photoperiodism, flowering, photoperiodism, flowering, regulation of trichome morphogenesis, membrane protein proteolysis, cellular response to salt stress, negative regulation of gibberellic acid mediated signaling pathway, regulation of trichome morphogenesis, response to gibberellin, regulation of trichome morphogenesis, regulation of trichome morphogenesis, regulation of trichome morphogenesis, regulation of trichome morphogenesis, cellular response to salt stress, response to gibberellin, photoperiodism, flowering, membrane protein proteolysis, photoperiodism, flowering, cellular response to salt stress, negative regulation of gibberellic acid mediated signaling pathway, seed germination, positive regulation of transcription, DNA-templated, seed germination, membrane protein proteolysis, photoperiodism, flowering, photoperiodism, flowering, response to salt stress, cellular response to salt stress, cellular response to salt stress, cellular response to salt stress, response to salt stress, photoperiodism, flowering, photoperiodism, flowering, photoperiodism, flowering, cellular response to salt stress, cellular response to salt stress, regulation of trichome morphogenesis, negative regulation of gibberellic acid mediated signaling pathway, regulation of trichome morphogenesis, negative regulation of gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway
Cellular Component   located in   plasma membrane, nucleus, nucleus, nucleus, nucleus, plasma membrane, plasma membrane
Molecular Function   enables   transcription cis-regulatory region binding, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/A 10156171 synonymous_variant p.Ile264Ile
C/T 10156478 upstream_gene_variant
C/T 10156481 upstream_gene_variant
T/A 10156483 upstream_gene_variant
T/A 10156484 upstream_gene_variant
T/C 10156500 missense_variant&splice_region_variant p.Lys182Arg
C/A 10156620 missense_variant p.Ser142Ile
C/T 10156654 missense_variant p.Asp131Asn
G/A 10156700 synonymous_variant p.His115His
T/A 10156964 upstream_gene_variant
T/C 10156973 upstream_gene_variant
T/C 10157133 upstream_gene_variant
G/A 10157256 upstream_gene_variant
C/G 10157272 upstream_gene_variant
C/T 10157275 upstream_gene_variant
T/A 10157371 upstream_gene_variant
C/T 10157382 upstream_gene_variant
C/T 10157391 upstream_gene_variant
C/T 10157393 upstream_gene_variant
C/T 10157555 upstream_gene_variant
C/A 10158109 splice_region_variant&intron_variant
C/A 10158171 splice_region_variant&intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24650.1
MEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKFEPWDLPGHVTSRKLKNLNNLVIVMDDSLVICRLKRNTEFRLSDHSNRASSSQRHPVNSHESGCAISEGGGIDQRDVCEQDKEVGCSSKRSSSSYGSPSNEQIDSVSESNHRPANEATLTESSEQAKEVYEEDCYAEILKDDIIKLDESSISAEGHTGAQEPAQMHPAQGTAQRRIRLRVGNSKRSSSAVVGFRSTIMHSSKSTFFAGISNSLVALVFLVFTLIFLVFVGWSQTSEVLSGCNL*


CDS Sequence:
>Vu_24650.1
ATGGAAGGGGTTTCCAGGGAAGCCCAGATGTCGATCGCTGCTTCTTCCATGTTTCCTGGCTTCAGATTCTGCCCCACCGATGAGGAGTTGATTTCTTACTACCTTAGGAAGAAGTTGGATGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTCTGTAAATTCGAGCCTTGGGATTTACCAGGACATGTAACCAGTCGGAAGTTGAAAAACTTGAATAATTTGGTGATAGTTATGGACGATTCTTTGGTTATTTGTCGGCTGAAGAGGAACACAGAGTTCCGTTTGAGTGATCATTCGAATAGAGCTTCTTCAAGTCAAAGGCATCCCGTGAATTCACACGAAAGTGGTTGTGCCATATCAGAAGGTGGTGGTATAGATCAAAGGGATGTTTGTGAGCAGGACAAAGAGGTGGGATGTAGCTCCAAGAGGAGCAGTAGCAGTTACGGTTCTCCTTCCAATGAGCAGATTGATTCTGTCTCGGAATCCAATCATCGACCAGCTAATGAAGCTACACTGACAGAATCTTCAGAACAAGCAAAGGAGGTGTATGAAGAGGATTGCTATGCAGAGATACTAAAGGATGATATCATAAAACTGGACGAATCATCAATCTCAGCAGAGGGTCACACAGGAGCACAGGAACCTGCACAGATGCATCCTGCGCAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCGTTCTTCTTCTGCAGTGGTTGGTTTCCGAAGCACAATAATGCACTCTTCAAAGAGTACCTTCTTCGCCGGAATAAGCAACAGTTTGGTGGCACTTGTTTTCTTGGTTTTCACTCTGATATTTTTGGTGTTTGTTGGGTGGAGTCAGACAAGTGAAGTGTTAAGCGGTTGTAACCTATGA


Promoter Sequence:
>Vu_24650::LG6:10158492-10160492(-)
TCTTGAATCAAATTTCAAAATTCGATGAGTTTTGAAATTTGATAAGTATCCTTGAAATCTGATGCTTTTCCCAAAAGATCTCACCTAAGTTGGATTTCAAAATCTAGTACGCTCCTAAATCGAATTTCAAAATCTAAATCAAATTTCAAAATCTAGTAGACTCTAAAATCGGTTTTCAAAATCTAGTGCTTTTCGAAACCAAATTTCAAAATCCAATGCATTCCTTCCTCGATATAAATTTTTAAATTTATTTCACTTATGAACCAAAATTAACCATCTAAATTTTAAGATTTTAAATTTCGTTCACTTCCAATTTATTCCCAAATTAATAAGCAAAGGAAAGTAAAAAGTATATATACATGAAACTTACCTTTAGGGAGTGCTACACAAAGAAGGTGTGTGGAGGAGACAGAAAGAAAATGTTGTGCTTGTGGGATGTATAAATTCAAAGGAAGAAGGATGTAAATAGGAATGACAACACGTCATCGTGCACGAATAGTGTCTACCTATTATCCGATCCGTAACAAAAAAATCTTCTTGCCACCTATATGCTACCCACGAGAATACTAGTTAAAAAAATACCTGCAGGTATTTTAAAACCCGCATATACTCACAAATATTTAAAAAAATATTTTATAAATTTTTAAAATAAAATTATTGAAAAATATATAAAATATAATATAAATCAAATTAAGTATAAAGTAAAATTTAATTTAATTGAATTTAATATAATAAAATATAAATTAAAATAAATTTTAATAAAAATTAATTTAATAAAATATAAATTAAAATTTTATTTTTATTTTTTTGTAGATAATGATAGTATAATACTCGCTATCTATTATTCACATATGTAATAAATATTTGTATGTACTGGAGTTTACGTGTAAATATCTAAATATACGTGTATTTTTGTTATATCTAATTGTAAAGTATGGAAAGAGGGGTAAGATGTGAATGAATGACGCAAGGTAAATGTGAAGATGATGATTTTTGAGGAAATAAATAAGGAAAGATAAAGGATAATTATTAATTATGTTTTTAGGTGATCAAAGTCAAAAGAAATCATTTAATGGTATTTAGAAAATTTTTGGAGCTACAGAAAAAAAATGTGGGTGCAAGAAGAAGTCCCCTTCTTTATATATGTTCTGGACCGTCCAACTAAAAAACAGAGCTTTAGTTAGTTTGGGCTAGCTATTCACACTCCGTGTTGTTGTTATCACCCCCAAATATTTTTTTAATCTCTTAAAAAAAATGTCCCTTTTCTACAACATAAAACTGTACCAAACATATCTAGGTTACGATTTATCTATTGTACGGTCAATTCACTGCATGAGTTCAGAAGCTGATAAGTTTCGGCTTCACGAGTTACGTTACGTGTATTCAGTATTTTCTTAAGACAGACACTGAGACAGACATATTTACCAAGTTAAAAAATTGTTCATTTTAAACCTGGTACGCAAGCAAAGAGTAAACCTTTGTTTTTTTTAACAACTTTTTTGCATGAAAAGTAAGTTTTGGAATGCCAAGGTTTGAATACATAGACATGAATGGTAAAGAAAAGGAAGGAGAGAAGAAAGAATAAAATATGAAAAGAAGTGTCTGAAAGAGGAGTGCTAGAAGCAACAAGAAGTGAGTGTGTTGATTGCAAGAAACGGTGGGAGAGTTTGAAGAGAGAAAGAAGGAGATGATGTGAGGCCACGTGACAAGAAGGAAATGGAAGCGAACCTTGGTTACCTCACCTCTCCATTTCACACATTCTTGGCCGACTCTCTCAAAAGCTCTACCACCACGCCAGAACCCGTGCCAGTTTGCGTGCCACACACAACCAAGCAAAGCATTCAACCTCCCCAACAGAGCCACTCCTCCCCCCAAGGAATAACTCCTCCACCACCAACCCTGTTCCTTTATAACCATGCACAACCTTCACCTTAAACCCTAGCTTCCTTTTCTTTATTCTTTTCTCGCCGACTGCTTCTCCTAAAACAGAGCACCGGATC


Gene Sequence:
>Vu_24650(-)
ATGGAAGGGGTTTCCAGGGAAGCCCAGATGTCGATCGCTGCTTCTTCCATGTTTCCTGGCTTCAGATTCTGCCCCACCGATGAGGAGTTGATTTCTTACTACCTTAGGAAGAAGTTGGATGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTCTGTAAATTCGAGCCTTGGGATTTACCAGGTTAATCCAAGCTTTTTGTCAAATGTTTGGGTCTGATTTCATGTGTGTTAGATCATTGTCTAGTTTTTCAATACTTCTTCTTAGGAGAACTTGTTTGGTAATTTTAGTCTTAACTAATGTCTATATCCTTAGGACATGTAACCAGTCGGAAGTTGAAAAACTTGAATAATTTGGTGATAGTTATGGACGTATGGGGTCCAAGACAAGGCAACCTTGTTAGGTTTAGTTGGTAGATGATTTGATACTATTTTAGATTTTAAACATGTCTCGTTTTCAAAAACTGAGTTATAAGGTTGGAGATTTCAGTGCGAGTAAATTAGTTTTGATATAACTGAAACCTGAGGTTTTCAATTGTTGAGTAGTCACAGTTGATGTTGAAAAATAGAAAATCAAAATGATCCATGTGGGGTGGGTTGGAACTTCTAGTTTCTGTTGTGTGTTAGTGGGACGGTGGAAACTAAATCGAAATTTGTCAACTTTACATACTAATACAAATATTTATTTTGCGGAGAACATCTTTCTCATGCAACTCAAGGTGAACAGGGGCATTCCACCTAATTTGTGCATTGGGTGAATTTGAATTGAAGTGCTGATCACTGTGTTGAACCCCTATGTAAAACCCACACATATTTGACATGAATTAATTGCAGTGTTGAAATTGTTAAAAACCCCGTAAAAGTTATTCAGCAAAGCCTCTTTTTTTGTTTAAATAGTTAAAACAACAATGATTTTCTGTTGTAAAGCCCTGGTTATTCTACCAACTGATAATTTTCTGCACTTTTGCCTCAATGTAGAATTTGATTTGGTTTTGAAAGAGACCCTGAGTTATAGTGTTTGATGCATAGTGTGGTGTGTTTGGTTGAACAATGAAAAAACATGTCTCCTCCGTTATTGACTACTCTCATGCTAGAGTGAAAACAGAACAACCAGAAAGAAACCAAGATATGTAATGTAGATTGAGTTTGTCTGTTTACAACCGATATTCATGTTCTAAGTAATTCGAAAAAACAGCATGTAAAAATTTAAAGCTGTTAAGCATGTTTAATCTGCCACCAATGGATTTGACTTACTGATAGTACTGGTTTGAAACCAGCCAAATCGTTCATTCAATCAAATAACGAATGGTTCTTCTTCTCTCCTCGTGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGGGCAACTGAATGTGGATATTGGAAGGCCACCGGCAAAGAGCGTAATGTAAAGTCAGGTTCCAACGTTATAGGAACAAAGAGGACTTTGGTGTTTCACTTGGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATTATGCACGAGTACTGCATCAATGACAAATCTCAGGTGAATTGTAGTTACAATATTCCAAGAGAAATGTTAGTAACATATTCCTTAAAAGATTGAAATTTATAGAAAACTAGCTGCGAAGACAGCATAAGTCACATGACTCAGATTGGTGGATTCTTAGTTGTATGTTTGTTGTACTATGTATTTACAGGATTCTTTGGTTATTTGTCGGCTGAAGAGGAACACAGAGTTCCGTTTGAGTGATCATTCGAATAGAGCTTCTTCAAGTCAAAGGCATCCCGTGAATTCACACGAAAGTGGTTGTGCCATATCAGAAGGTGGTGGTATAGATCAAAGGGATGTTTGTGAGCAGGACAAAGAGGTGGGATGTAGCTCCAAGAGGAGCAGTAGCAGTTACGGTTCTCCTTCCAATGAGCAGATTGATTCTGTCTCGGAATCCAATCATCGACCAGCTAATGAAGCTACACTGACAGAATCTTCAGAACAAGCAAAGGTACATACATACTAAAAGAAGAGTTAATTGGTTTTACATTCATGGAGAAATTTATCCATTTGTTTGAGTTTTTATATTGCAGGAGGTGTATGAAGAGGATTGCTATGCAGAGATACTAAAGGATGATATCATAAAACTGGACGAATCATCAATCTCAGCAGAGGGTCACACAGGAGCACAGGAACCTGCACAGATGCATCCTGCGCAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCGTTCTTCTTCTGCAGTGGTTGGTTTCCGAAGCACAATAATGCACTCTTCAAAGAGTACCTTCTTCGCCGGAATAAGCAACAGTTTGGTGGCACTTGTTTTCTTGGTTTTCACTCTGATATTTTTGGTGTTTGTTGGGTGGAGTCAGACAAGTGAAGTGTTAAGCGGTTGTAACCTATGA