Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_24691 LG6 10549980 10550690 PREDICTED: dehydration-responsive element-binding protein 1F-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, response to cold, response to cold, cold acclimation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cold acclimation, response to cold, response to cold, response to cold, response to cold, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/A 10550127 synonymous_variant p.Ser188Ser
G/T 10550153 missense_variant p.Pro180Thr
T/A 10550157 synonymous_variant p.Thr178Thr
A/C 10550177 missense_variant p.Phe172Val
G/A 10550230 missense_variant p.Ser154Phe
A/G 10550283 synonymous_variant p.Asp136Asp
A/C 10550301 missense_variant p.Asn130Lys
A/T 10550322 synonymous_variant p.Val123Val
T/G 10550367 synonymous_variant p.Leu108Leu
G/C 10550439 synonymous_variant p.Thr84Thr
G/T 10550583 synonymous_variant p.Ser36Ser
A/G 10550601 synonymous_variant p.Ser30Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_24691.1
MDVTMNNDDYSFSSSPSSTSSQSQLCNPNSPSDNSSFPSQKPELSSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEVREPNTKSRIWLGTYSAPEMAARAHDVAALALKGTSASFNFPDSVSLLPVANSSSAADIRAAAAQVSEVFLPANPSSSFTRVEIETNPCSVEGFVDFAKTVPNVEESNESVFFDEEAVYNMPGLLDSMAEGLLITPPSMKRFDWDEVDCETDLTLWTY*


CDS Sequence:
>Vu_24691.1
ATGGATGTAACCATGAACAATGATGACTACTCTTTCTCTTCATCACCATCATCCACTTCTTCTCAAAGCCAACTTTGCAACCCGAATTCTCCATCGGATAATTCATCCTTCCCCTCACAAAAACCAGAGTTGAGTTCTCACAAGAGGAAAGCTGGGAGAAAGAAGTTTCGAGAAACACGGCATCCGGTGTATAGAGGAGTTCGTCAGAGAAACGGTAACAGATGGGTGTGTGAAGTTCGTGAACCCAACACCAAATCAAGGATATGGCTCGGAACATACTCTGCACCAGAAATGGCAGCTAGGGCACATGACGTGGCTGCCCTAGCACTTAAGGGCACCTCTGCATCATTCAATTTCCCTGATTCGGTTTCTCTTCTTCCAGTTGCAAATTCATCTTCAGCTGCAGATATTAGAGCGGCTGCAGCACAAGTTTCCGAGGTTTTTTTACCGGCCAACCCTTCTTCGTCCTTTACAAGGGTTGAAATAGAAACTAACCCTTGTTCGGTGGAGGGTTTTGTTGATTTTGCCAAGACAGTGCCTAATGTTGAGGAGTCCAACGAATCAGTGTTTTTCGACGAAGAGGCAGTTTATAACATGCCAGGTTTGTTAGATAGCATGGCTGAGGGTCTTCTCATTACTCCACCTTCTATGAAGAGATTTGATTGGGACGAGGTTGATTGTGAAACAGACCTCACTCTCTGGACATATTAA


Promoter Sequence:
>Vu_24691::LG6:10550690-10552690(-)
ATACTTTAACTTAACCTGCTTAAATTTAATTTTATTTATATTAATTTTTTTAATATGTAATTTTGTTGGAATTATATTTTAAAATTAATTTTTTTACAGAAATAAAAAAAACTATTTGTGTAACAAAATTTATAAATAAAAGAAGGAAATGTTTTAAAACATGACCAGTAACAACTAGGTTGTATTGTTACCGTCCATCCCGATATCTAACATATCCTCTCCAATTTAAAAAAGAAATGTTAATTATTCTAATTGGGAATTTTTTTTGATAAAATAAATAAAATTTAAATTTTCTTTTATAACAAAAGTGTATCTTCCAGTTTGTGGACGCAGGGTAATGGTTCCTAAATTGTGCACATGAAAGTGTTATTTATGCATAATTCATTAATATAAATAAAAATTCTCTTAAAGAAAACAAATGTAATGATAAAATCATTATTTAAAAAAAATATCACCGATTTTTAGTGATAATAACTGACGAGAAAACAGTTGACTTAGTCAACGTTGACGTTAATAAAATGTCAAAGACGTACACATTCAAATTTCAATGACTAAAAAGGTCAGGTCAACGGCACACGTGAAGTTATATTATTAACAACTAAAACGGACACGTGGAGTTATATTATTAACAACTAAAACGGGACCACCAACGTGAAATTGGTTTTTGATTTGGAAGTGTTTGAATTATTTATTTATACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTAAGAAAATTGTGTCTTTTTTCTTTTAAAACTATTTTTATTTATGAAAAAAAAAACACACTTTTCATGTAATATTTTCTGTCGTTGACTTTAAGGTTCCATTCTTGAAATATCATTCATTATTTTTTCATCAAATTGGGATTTTATTCCATGAATAATCTCCATGCAAAAAACATGTTTAACTGCCATTGCTATTATAATCATTATGTGTTTCATATTTCTCCATAATCACATACTCATTTATATTATTATATGATAAAAATTAATTTAATTATATTATTAAGTTTTATTGAGTTGACACCATGGTTAAATAACAAGTCAAACTCATTTGTCGAAATTTCTCAACATTGACAATCATCAGCGGCGTTGACATTCATCATAGTATTTCGTAAGAAAAAAAAAAGTGTTTCGAACACCAATTTAATGTGAAAGTTTTCCTATTTCCATGTTCCACTTCTTTTTTTTCCTTTGAAGTCAGAACCATTCCCACCATTTCATGAGTCAGATTTCCATAATGCTTCTTTACACAACTTTAATGATTTCGAATTCTGCTTTAATTGTCTTCAAGCATAAACTTTTTTTCCAAAAGAAAAAAAAAAGTATCCAGTTGTATGCATATATATATAAAGTAAAATAAAAATAACAGAAATCTGTTAAGACATTTAAGAGAAATCTCATATAATATAGAAGATAAATTTTGAAACTTCTACATTCTTAAATTTTAACAAGTGAAAAATAAATTTTAAACTATTCTACTAAACTATACTTAATTTTATGTCTCAAAACAAATTATTTTAAAGAATAAAAAGTTGCAACGTGTGTCATACTCCCCTATCATTGTCGGATACGAGACTATAACTAATGTTCTGTCATATAAATGTCAATTAACATTTAAATTCTTTCCAAAATAAACCAAATTTTAGACTTAAATAAAATTCAAGGTCAATATATTCTACAAATTAATAATTATGTCTTTTTTCTGTTAACTTCCAATCTTTGCCATTAACCAAGTGACGGAATTTGATTCGTTAAATGTGTAGCACGTGTTCCTTGCGACCTAGTTCTGTAGCTTATCTTTCTCGATTTCTATACATGTTTGGTTCAAAAGACATGAAATTGTACTACTCTTCTTGGTCTATATATAACAACATTATTCCTTTTCACCTCGTACTCATCGTTCATCAACAGTTGCCATATTAAACACACGTCAACTGTTTCATTCTTCATCACC


Gene Sequence:
>Vu_24691(-)
ATGGATGTAACCATGAACAATGATGACTACTCTTTCTCTTCATCACCATCATCCACTTCTTCTCAAAGCCAACTTTGCAACCCGAATTCTCCATCGGATAATTCATCCTTCCCCTCACAAAAACCAGAGTTGAGTTCTCACAAGAGGAAAGCTGGGAGAAAGAAGTTTCGAGAAACACGGCATCCGGTGTATAGAGGAGTTCGTCAGAGAAACGGTAACAGATGGGTGTGTGAAGTTCGTGAACCCAACACCAAATCAAGGATATGGCTCGGAACATACTCTGCACCAGAAATGGCAGCTAGGGCACATGACGTGGCTGCCCTAGCACTTAAGGGCACCTCTGCATCATTCAATTTCCCTGATTCGGTTTCTCTTCTTCCAGTTGCAAATTCATCTTCAGCTGCAGATATTAGAGCGGCTGCAGCACAAGTTTCCGAGGTTTTTTTACCGGCCAACCCTTCTTCGTCCTTTACAAGGGTTGAAATAGAAACTAACCCTTGTTCGGTGGAGGGTTTTGTTGATTTTGCCAAGACAGTGCCTAATGTTGAGGAGTCCAACGAATCAGTGTTTTTCGACGAAGAGGCAGTTTATAACATGCCAGGTTTGTTAGATAGCATGGCTGAGGGTCTTCTCATTACTCCACCTTCTATGAAGAGATTTGATTGGGACGAGGTTGATTGTGAAACAGACCTCACTCTCTGGACATATTAA